Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47019 * 269.99948 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00246 * 3 2 1 6 6 H 1.48499 * 109.46573 * 150.00273 * 3 2 1 7 7 C 1.37882 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99560 * 179.97438 * 7 2 1 10 10 N 1.46510 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99729 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00176 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00143 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.55880 * 35.00097 * 14 13 11 16 16 C 1.53188 * 109.55990 * 274.77940 * 14 13 11 17 17 C 1.53089 * 109.28624 * 182.43396 * 16 14 13 18 18 O 1.43055 * 109.35922 * 58.23270 * 17 16 14 19 19 C 1.41974 * 114.26467 * 300.33997 * 18 17 16 20 20 C 1.54640 * 110.35250 * 296.17529 * 19 18 17 21 21 C 1.55066 * 100.87982 * 275.00226 * 20 19 18 22 22 O 1.43706 * 105.20089 * 324.19190 * 21 20 19 23 23 C 1.43418 * 109.93549 * 24.31558 * 22 21 20 24 24 C 1.52512 * 111.48254 * 58.87281 * 19 18 17 25 25 H 0.97004 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47361 * 60.00475 * 9 7 2 27 27 H 1.08992 * 109.47541 * 299.99736 * 9 7 2 28 28 H 0.96999 * 120.00045 * 0.02562 * 10 9 7 29 29 H 0.96999 * 119.99929 * 0.02562 * 13 11 10 30 30 H 1.08994 * 109.50724 * 302.37864 * 16 14 13 31 31 H 1.09002 * 109.49926 * 62.45882 * 16 14 13 32 32 H 1.09006 * 109.48956 * 178.19414 * 17 16 14 33 33 H 1.09001 * 109.49380 * 298.26399 * 17 16 14 34 34 H 1.09005 * 111.13724 * 32.90470 * 20 19 18 35 35 H 1.08997 * 111.14012 * 157.09889 * 20 19 18 36 36 H 1.08999 * 110.29839 * 205.26087 * 21 20 19 37 37 H 1.09001 * 110.29608 * 83.12740 * 21 20 19 38 38 H 1.08996 * 109.85367 * 238.37844 * 23 22 21 39 39 H 1.08996 * 109.86192 * 117.30234 * 23 22 21 40 40 H 1.09001 * 109.65280 * 184.58573 * 24 19 18 41 41 H 1.08999 * 109.48791 * 64.37158 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8975 -0.0005 13 7 5.7741 -4.0923 -0.0003 14 6 7.2144 -4.3601 0.0003 15 1 7.7267 -3.5994 0.5894 16 6 7.7412 -4.3361 -1.4379 17 6 9.2338 -4.6763 -1.4355 18 8 9.4260 -5.9623 -0.8390 19 6 8.9677 -6.0582 0.5013 20 6 9.7778 -5.1101 1.4158 21 6 11.0037 -6.0000 1.7473 22 8 10.4838 -7.3361 1.8456 23 6 9.2714 -7.4461 1.0874 24 6 7.4791 -5.7433 0.6064 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8889 27 1 3.8745 -0.6801 -0.8911 28 1 3.3694 -3.3127 -0.0010 29 1 5.1438 -4.8296 -0.0003 30 1 7.2015 -5.0707 -2.0355 31 1 7.5945 -3.3430 -1.8626 32 1 9.6049 -4.6917 -2.4603 33 1 9.7772 -3.9248 -0.8628 34 1 10.0790 -4.2098 0.8803 35 1 9.2182 -4.8604 2.3172 36 1 11.4463 -5.6958 2.6958 37 1 11.7421 -5.9393 0.9478 38 1 8.4552 -7.7599 1.7380 39 1 9.4030 -8.1678 0.2813 40 1 7.1770 -5.7457 1.6537 41 1 6.9090 -6.4950 0.0606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321357262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -149.216756 kcal Electronic energy + Delta-G solvation = -22994.417755 eV Core-core repulsion = 19487.135448 eV Total energy + Delta-G solvation = -3507.282307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92312 -40.78040 -38.72659 -36.60461 -35.91037 -34.45170 -33.37667 -32.50766 -31.04944 -29.71305 -27.90063 -25.20731 -24.25626 -23.65639 -22.83489 -21.76526 -20.63583 -19.87165 -18.46492 -18.16978 -17.51401 -17.11386 -16.89092 -16.50106 -16.31456 -16.00138 -15.67592 -15.48078 -15.39580 -14.96532 -14.56838 -14.48016 -14.21506 -14.08707 -13.88686 -13.02938 -12.99427 -12.92327 -12.72876 -12.66834 -12.30162 -12.09685 -11.92919 -11.88509 -11.66176 -11.46923 -11.20216 -10.91763 -10.60874 -10.55345 -10.30349 -9.68629 -8.39850 -6.46715 1.33630 1.35594 1.48647 1.80050 2.19433 2.28807 2.54152 2.87625 2.95927 3.28586 3.42534 3.66492 3.69358 3.79737 4.00511 4.06867 4.11847 4.22096 4.29541 4.45852 4.55389 4.63129 4.70514 4.74345 4.79176 4.82730 4.88884 4.94026 5.00251 5.03108 5.05552 5.17131 5.25362 5.52568 5.55830 5.91501 5.97391 6.19164 6.28067 6.55713 7.14155 7.26072 7.66017 8.74934 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037614 B = 0.003132 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.230935 B = 8938.711082 C = 9027.952359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.252 3.748 10 N -0.722 5.722 11 C 0.696 3.304 12 O -0.642 6.642 13 N -0.728 5.728 14 C 0.164 3.836 15 H 0.071 0.929 16 C -0.164 4.164 17 C 0.066 3.934 18 O -0.372 6.372 19 C 0.091 3.909 20 C -0.187 4.187 21 C 0.055 3.945 22 O -0.402 6.402 23 C 0.066 3.934 24 C -0.135 4.135 25 H 0.272 0.728 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.405 0.595 29 H 0.410 0.590 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.253 -14.927 0.873 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.524 6.524 13 N -0.385 5.385 14 C 0.059 3.941 15 H 0.089 0.911 16 C -0.203 4.203 17 C -0.011 4.011 18 O -0.291 6.291 19 C 0.050 3.950 20 C -0.225 4.225 21 C -0.021 4.021 22 O -0.322 6.322 23 C -0.010 4.010 24 C -0.173 4.173 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.240 0.760 29 H 0.247 0.753 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.952 -14.286 0.900 25.375 hybrid contribution -0.988 0.845 -0.184 1.313 sum 19.964 -13.441 0.716 24.078 Atomic orbital electron populations 1.69980 1.07702 1.28631 1.50749 1.25589 0.95532 1.02676 0.93591 0.85849 0.79259 0.79279 0.79457 1.19000 1.19816 1.18425 1.21283 0.89940 0.94565 1.52579 0.92293 1.18932 0.92969 0.79851 0.95465 1.45129 1.04709 1.09899 1.77846 1.16214 0.82633 0.83910 0.77698 1.90828 1.56109 1.44951 1.60550 1.44994 1.08218 1.05191 1.80052 1.20831 0.79674 0.97329 0.96296 0.91126 1.22588 0.97812 1.02500 0.97442 1.22700 0.93987 0.84717 0.99697 1.87820 1.82219 1.33128 1.25908 1.22389 0.92989 0.96219 0.83402 1.23887 0.97794 0.99670 1.01133 1.23449 0.95623 0.80578 1.02485 1.88422 1.40593 1.31091 1.72101 1.23147 0.87861 0.94684 0.95316 1.22271 0.95713 0.95781 1.03539 0.91832 0.97187 0.97341 0.76001 0.75329 0.90166 0.92170 0.86731 0.92247 0.89040 0.88716 0.88293 0.91849 0.87839 0.90025 0.88473 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.96 21.45 0.30 -55.17 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 7 C -0.55 -30.01 9.83 25.60 0.25 -29.76 16 8 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 9 C 0.25 12.38 4.50 85.63 0.38 12.77 16 10 N -0.72 -28.75 5.55 -482.29 -2.68 -31.42 16 11 C 0.70 25.91 8.53 179.06 1.53 27.44 16 12 O -0.64 -29.15 16.01 -3.98 -0.06 -29.22 16 13 N -0.73 -18.53 5.09 -457.01 -2.33 -20.86 16 14 C 0.16 3.58 2.34 45.16 0.11 3.69 16 15 H 0.07 1.86 7.05 -2.39 -0.02 1.84 16 16 C -0.16 -3.45 5.70 30.69 0.17 -3.28 16 17 C 0.07 1.13 6.62 72.01 0.48 1.61 16 18 O -0.37 -6.83 10.24 -148.97 -1.53 -8.36 16 19 C 0.09 1.44 0.84 -10.16 -0.01 1.44 16 20 C -0.19 -2.89 5.32 31.86 0.17 -2.72 16 21 C 0.05 0.85 7.78 72.69 0.57 1.42 16 22 O -0.40 -7.78 11.37 -148.98 -1.69 -9.47 16 23 C 0.07 1.02 7.18 72.22 0.52 1.54 16 24 C -0.13 -2.04 4.22 30.54 0.13 -1.91 16 25 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 27 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 28 H 0.40 13.96 8.34 -92.71 -0.77 13.19 16 29 H 0.41 7.86 8.62 -92.71 -0.80 7.06 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 1.00 6.26 -2.39 -0.01 0.98 16 34 H 0.09 1.43 6.10 -2.38 -0.01 1.41 16 35 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.21 7.78 -2.39 -0.02 1.19 16 39 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 40 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.59 326.72 -1.92 -72.51 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.57 Total: 22.01 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.76 Total: 14.18 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.71 Total: -107.45 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -3.28 Total: -47.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -70.59 -1.92 -72.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321357262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.710 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds