Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99499 * 2 1 4 4 H 1.48504 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47396 * 299.99872 * 3 2 1 6 6 H 1.48496 * 109.46991 * 60.00608 * 3 2 1 7 7 C 1.37876 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99706 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46859 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99907 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99977 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99833 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99508 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.55884 * 35.21547 * 14 13 11 16 16 C 1.53173 * 109.56010 * 275.00002 * 14 13 11 17 17 C 1.53089 * 109.27562 * 182.70300 * 16 14 13 18 18 O 1.43017 * 109.37466 * 58.08256 * 17 16 14 19 19 C 1.42225 * 114.19139 * 299.95718 * 18 17 16 20 20 C 1.54305 * 110.17803 * 181.54944 * 19 18 17 21 21 C 1.55104 * 101.98480 * 98.24603 * 20 19 18 22 22 O 1.44430 * 103.55032 * 36.62202 * 21 20 19 23 23 C 1.43881 * 106.99197 * 320.24487 * 22 21 20 24 24 C 1.52499 * 110.93768 * 59.49048 * 19 18 17 25 25 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47450 * 60.00118 * 9 7 2 27 27 H 1.09000 * 109.46723 * 299.99673 * 9 7 2 28 28 H 0.97002 * 119.99918 * 359.97438 * 10 9 7 29 29 H 0.96991 * 119.99843 * 0.02562 * 13 11 10 30 30 H 1.09005 * 109.49923 * 62.76256 * 16 14 13 31 31 H 1.09003 * 109.53774 * 302.66759 * 16 14 13 32 32 H 1.08999 * 109.48869 * 298.10395 * 17 16 14 33 33 H 1.08998 * 109.48341 * 178.04824 * 17 16 14 34 34 H 1.08998 * 110.93236 * 216.42322 * 20 19 18 35 35 H 1.09005 * 110.92479 * 340.07819 * 20 19 18 36 36 H 1.08995 * 110.60928 * 278.10425 * 21 20 19 37 37 H 1.08997 * 110.74082 * 155.19986 * 21 20 19 38 38 H 1.09003 * 109.90460 * 267.03193 * 23 22 21 39 39 H 1.08994 * 110.06326 * 145.86415 * 23 22 21 40 40 H 1.09004 * 109.51438 * 63.81566 * 24 19 18 41 41 H 1.08991 * 109.52226 * 183.99090 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2033 -3.6126 -0.0015 11 6 1.7541 -4.8833 -0.0019 12 8 0.5587 -5.1056 -0.0019 13 7 2.6300 -5.9077 -0.0022 14 6 2.1416 -7.2889 -0.0020 15 1 1.2287 -7.3532 -0.5940 16 6 1.8526 -7.7305 1.4359 17 6 1.4074 -9.1952 1.4349 18 8 2.4294 -10.0013 0.8424 19 6 2.7365 -9.6571 -0.5029 20 6 3.8180 -10.6055 -1.0614 21 6 2.9676 -11.6338 -1.8520 22 8 1.9062 -10.8328 -2.4159 23 6 1.5163 -9.8821 -1.4088 24 6 3.2100 -8.2108 -0.6009 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5563 -0.8919 27 1 0.6242 -2.5574 0.8880 28 1 3.1569 -3.4353 -0.0010 29 1 3.5835 -5.7303 -0.0017 30 1 1.0606 -7.1096 1.8550 31 1 2.7550 -7.6247 2.0381 32 1 0.4865 -9.2950 0.8603 33 1 1.2341 -9.5232 2.4599 34 1 4.4992 -10.0720 -1.7242 35 1 4.3645 -11.0917 -0.2531 36 1 2.5616 -12.3918 -1.1821 37 1 3.5587 -12.0980 -2.6414 38 1 0.6878 -10.2806 -0.8232 39 1 1.2222 -8.9422 -1.8757 40 1 4.1424 -8.0947 -0.0483 41 1 3.3708 -7.9502 -1.6469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321357266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = -127.012875 kcal Electronic energy + Delta-G solvation = -22942.293696 eV Core-core repulsion = 19435.974222 eV Total energy + Delta-G solvation = -3506.319474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04170 -39.22925 -37.81717 -35.26546 -34.04740 -32.68798 -32.43617 -31.21362 -29.88196 -27.54091 -26.71589 -24.11771 -23.55669 -22.65052 -21.51353 -20.18226 -19.63164 -18.13652 -17.29897 -16.89103 -16.15701 -15.80436 -15.66833 -15.44713 -14.90194 -14.75978 -14.63997 -14.15212 -13.82771 -13.80801 -13.49393 -13.05508 -12.90973 -12.26194 -12.00661 -11.97533 -11.93370 -11.72632 -11.50680 -11.36569 -11.07528 -10.94069 -10.90137 -10.44877 -10.31210 -10.08643 -9.78041 -9.38308 -9.35380 -8.82247 -8.70774 -7.78737 -6.16277 -4.22846 3.21474 3.23395 3.30639 3.32621 3.35858 3.70797 3.88777 4.10314 4.31444 4.43592 4.47690 4.67555 4.71803 4.85448 4.90908 4.99544 5.11015 5.12926 5.19950 5.23657 5.37733 5.39667 5.42086 5.55603 5.56702 5.59955 5.66494 5.81320 5.98290 6.15074 6.50834 6.82001 6.96932 7.09849 7.49688 7.54108 7.55931 7.89207 8.03072 8.75535 8.92384 9.31270 9.46748 10.94012 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.002984 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.292273 B = 9381.023770 C = 9500.949955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.752 5.752 14 C 0.165 3.835 15 H 0.088 0.912 16 C -0.168 4.168 17 C 0.060 3.940 18 O -0.367 6.367 19 C 0.093 3.907 20 C -0.142 4.142 21 C 0.046 3.954 22 O -0.373 6.373 23 C 0.021 3.979 24 C -0.145 4.145 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.391 0.609 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.115 -21.766 -0.170 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.480 6.480 13 N -0.408 5.408 14 C 0.058 3.942 15 H 0.106 0.894 16 C -0.208 4.208 17 C -0.017 4.017 18 O -0.286 6.286 19 C 0.052 3.948 20 C -0.179 4.179 21 C -0.031 4.031 22 O -0.292 6.292 23 C -0.056 4.056 24 C -0.183 4.183 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.224 0.776 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.798 -21.938 -0.292 23.285 hybrid contribution 1.217 1.464 0.224 1.917 sum 9.015 -20.474 -0.068 22.371 Atomic orbital electron populations 1.69986 1.06088 1.27171 1.49033 1.24949 0.94916 0.99421 0.94772 0.86359 0.79795 0.82981 0.77743 1.19672 1.20801 1.20806 1.21260 0.93291 0.90434 1.52999 0.91917 1.18985 0.87775 0.81085 0.97595 1.45734 1.10804 1.04428 1.77112 1.16168 0.85234 0.81075 0.78253 1.90866 1.14197 1.84202 1.58699 1.45194 1.08800 1.04637 1.82218 1.20691 0.97358 0.80309 0.95811 0.89365 1.22654 1.03356 0.96612 0.98130 1.22673 0.90249 0.89925 0.98847 1.87871 1.57721 1.57648 1.25324 1.22291 0.94637 0.94344 0.83545 1.23106 0.97338 0.97062 1.00405 1.23604 0.88240 0.93729 0.97499 1.88932 1.54498 1.48363 1.37427 1.23912 0.96881 0.94136 0.90700 1.22391 0.99621 0.93458 1.02857 0.92506 0.95741 0.95759 0.78168 0.77552 0.89650 0.90907 0.92541 0.88228 0.88969 0.88781 0.91804 0.88707 0.91276 0.88672 0.90088 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.14 5.43 -5.19 -0.03 7.11 16 10 N -0.73 -15.50 5.55 -66.41 -0.37 -15.87 16 11 C 0.69 14.07 8.53 -86.92 -0.74 13.33 16 12 O -0.60 -14.72 16.01 5.29 0.08 -14.63 16 13 N -0.75 -10.91 5.09 -58.44 -0.30 -11.20 16 14 C 0.16 2.09 2.32 -67.69 -0.16 1.93 16 15 H 0.09 1.30 6.40 -51.93 -0.33 0.97 16 16 C -0.17 -2.01 5.70 -26.60 -0.15 -2.17 16 17 C 0.06 0.61 6.55 37.20 0.24 0.85 16 18 O -0.37 -3.87 10.17 -35.23 -0.36 -4.23 16 19 C 0.09 0.89 0.96 -89.87 -0.09 0.81 16 20 C -0.14 -1.09 6.43 -24.94 -0.16 -1.25 16 21 C 0.05 0.37 7.73 38.27 0.30 0.67 16 22 O -0.37 -4.24 11.53 -35.23 -0.41 -4.65 16 23 C 0.02 0.22 6.18 37.48 0.23 0.45 16 24 C -0.14 -1.41 4.06 -26.83 -0.11 -1.52 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 29 H 0.39 4.52 8.62 -40.82 -0.35 4.17 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.56 6.65 -51.93 -0.35 0.22 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.61 7.84 -51.93 -0.41 0.21 16 35 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.72 6.73 -51.93 -0.35 0.37 16 39 H 0.10 1.05 6.66 -51.93 -0.35 0.71 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -33.36 329.61 -7.97 -41.33 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.23 Total: 7.06 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.08 Total: 6.81 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.07 Total: -52.50 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.68 Total: -23.51 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.36 -7.97 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321357266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.682 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds