Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99499 * 2 1 4 4 H 1.48504 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47396 * 299.99872 * 3 2 1 6 6 H 1.48496 * 109.46991 * 60.00608 * 3 2 1 7 7 C 1.37876 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99706 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46859 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99907 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99977 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99833 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99508 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.55884 * 35.21547 * 14 13 11 16 16 C 1.53173 * 109.56010 * 275.00002 * 14 13 11 17 17 C 1.53089 * 109.27562 * 182.70300 * 16 14 13 18 18 O 1.43017 * 109.37466 * 58.08256 * 17 16 14 19 19 C 1.42225 * 114.19139 * 299.95718 * 18 17 16 20 20 C 1.54305 * 110.17803 * 181.54944 * 19 18 17 21 21 C 1.55104 * 101.98480 * 98.24603 * 20 19 18 22 22 O 1.44430 * 103.55032 * 36.62202 * 21 20 19 23 23 C 1.43881 * 106.99197 * 320.24487 * 22 21 20 24 24 C 1.52499 * 110.93768 * 59.49048 * 19 18 17 25 25 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47450 * 60.00118 * 9 7 2 27 27 H 1.09000 * 109.46723 * 299.99673 * 9 7 2 28 28 H 0.97002 * 119.99918 * 359.97438 * 10 9 7 29 29 H 0.96991 * 119.99843 * 0.02562 * 13 11 10 30 30 H 1.09005 * 109.49923 * 62.76256 * 16 14 13 31 31 H 1.09003 * 109.53774 * 302.66759 * 16 14 13 32 32 H 1.08999 * 109.48869 * 298.10395 * 17 16 14 33 33 H 1.08998 * 109.48341 * 178.04824 * 17 16 14 34 34 H 1.08998 * 110.93236 * 216.42322 * 20 19 18 35 35 H 1.09005 * 110.92479 * 340.07819 * 20 19 18 36 36 H 1.08995 * 110.60928 * 278.10425 * 21 20 19 37 37 H 1.08997 * 110.74082 * 155.19986 * 21 20 19 38 38 H 1.09003 * 109.90460 * 267.03193 * 23 22 21 39 39 H 1.08994 * 110.06326 * 145.86415 * 23 22 21 40 40 H 1.09004 * 109.51438 * 63.81566 * 24 19 18 41 41 H 1.08991 * 109.52226 * 183.99090 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2033 -3.6126 -0.0015 11 6 1.7541 -4.8833 -0.0019 12 8 0.5587 -5.1056 -0.0019 13 7 2.6300 -5.9077 -0.0022 14 6 2.1416 -7.2889 -0.0020 15 1 1.2287 -7.3532 -0.5940 16 6 1.8526 -7.7305 1.4359 17 6 1.4074 -9.1952 1.4349 18 8 2.4294 -10.0013 0.8424 19 6 2.7365 -9.6571 -0.5029 20 6 3.8180 -10.6055 -1.0614 21 6 2.9676 -11.6338 -1.8520 22 8 1.9062 -10.8328 -2.4159 23 6 1.5163 -9.8821 -1.4088 24 6 3.2100 -8.2108 -0.6009 25 1 -0.4851 0.8400 0.0004 26 1 0.6249 -2.5563 -0.8919 27 1 0.6242 -2.5574 0.8880 28 1 3.1569 -3.4353 -0.0010 29 1 3.5835 -5.7303 -0.0017 30 1 1.0606 -7.1096 1.8550 31 1 2.7550 -7.6247 2.0381 32 1 0.4865 -9.2950 0.8603 33 1 1.2341 -9.5232 2.4599 34 1 4.4992 -10.0720 -1.7242 35 1 4.3645 -11.0917 -0.2531 36 1 2.5616 -12.3918 -1.1821 37 1 3.5587 -12.0980 -2.6414 38 1 0.6878 -10.2806 -0.8232 39 1 1.2222 -8.9422 -1.8757 40 1 4.1424 -8.0947 -0.0483 41 1 3.3708 -7.9502 -1.6469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321357266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = -153.695959 kcal Electronic energy + Delta-G solvation = -22943.450762 eV Core-core repulsion = 19435.974222 eV Total energy + Delta-G solvation = -3507.476540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92874 -40.74291 -38.72209 -36.59350 -35.91638 -34.40925 -33.47672 -32.50547 -30.59881 -29.23516 -27.92935 -25.27714 -24.59463 -24.11650 -22.56369 -21.73050 -20.62839 -19.74972 -18.19877 -17.94588 -17.84724 -17.06951 -16.75943 -16.56391 -16.32732 -16.13957 -15.73198 -15.30353 -15.17066 -14.90227 -14.63641 -14.43029 -14.03628 -13.95381 -13.69199 -13.05482 -12.87177 -12.80047 -12.75645 -12.48219 -12.38556 -12.21715 -12.15032 -11.96220 -11.46275 -11.44699 -11.19563 -10.82565 -10.81650 -10.52925 -10.27015 -9.61577 -8.28781 -6.45163 1.43466 1.44975 1.58053 1.82539 2.22608 2.39028 2.54543 2.99423 3.06390 3.31614 3.45316 3.67515 3.72463 3.74528 3.91856 4.03212 4.16144 4.20836 4.32105 4.38182 4.55001 4.65992 4.70353 4.76124 4.84557 4.86911 4.93327 4.99868 5.05658 5.08661 5.16650 5.26773 5.48881 5.53513 5.67270 5.77627 5.85017 6.16124 6.25659 6.67059 7.24274 7.30977 7.71685 8.83808 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038279 B = 0.002984 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.292273 B = 9381.023770 C = 9500.949955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.647 6.647 13 N -0.727 5.727 14 C 0.159 3.841 15 H 0.063 0.937 16 C -0.163 4.163 17 C 0.063 3.937 18 O -0.368 6.368 19 C 0.091 3.909 20 C -0.134 4.134 21 C 0.039 3.961 22 O -0.396 6.396 23 C 0.019 3.981 24 C -0.133 4.133 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.405 0.595 29 H 0.411 0.589 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 -22.344 -0.057 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.530 6.530 13 N -0.383 5.383 14 C 0.054 3.946 15 H 0.081 0.919 16 C -0.202 4.202 17 C -0.013 4.013 18 O -0.287 6.287 19 C 0.050 3.950 20 C -0.171 4.171 21 C -0.036 4.036 22 O -0.315 6.315 23 C -0.059 4.059 24 C -0.171 4.171 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.240 0.760 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.123 -22.578 -0.178 25.170 hybrid contribution 0.164 1.524 0.175 1.543 sum 11.287 -21.054 -0.002 23.889 Atomic orbital electron populations 1.70147 1.08285 1.28509 1.50047 1.26071 0.95783 1.03898 0.93902 0.85092 0.79075 0.77255 0.77655 1.17598 1.20491 1.20462 1.21629 0.94315 0.90451 1.52740 0.89804 1.18400 0.88097 0.83378 0.93893 1.45309 1.10901 1.03832 1.77628 1.16327 0.85177 0.81597 0.77770 1.90837 1.16695 1.84895 1.60543 1.44951 1.09037 1.04089 1.80242 1.20878 0.97746 0.79570 0.96437 0.91910 1.22574 1.02874 0.97440 0.97321 1.22675 0.90064 0.88641 0.99955 1.87881 1.57569 1.57552 1.25651 1.22389 0.94869 0.94725 0.83026 1.23140 0.96739 0.96440 1.00818 1.23837 0.87774 0.93653 0.98380 1.88910 1.55662 1.48854 1.38102 1.23886 0.97513 0.93660 0.90792 1.22337 0.99039 0.92493 1.03268 0.92245 0.99736 0.99709 0.75996 0.75235 0.92558 0.89711 0.92916 0.86352 0.87433 0.87482 0.91563 0.86634 0.91734 0.89890 0.87954 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.20 9.28 25.60 0.24 -29.96 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.29 15.91 5.43 85.63 0.46 16.38 16 10 N -0.72 -31.09 5.55 -482.29 -2.68 -33.77 16 11 C 0.69 28.62 8.53 179.05 1.53 30.15 16 12 O -0.65 -33.30 16.01 -3.99 -0.06 -33.36 16 13 N -0.73 -20.45 5.09 -457.06 -2.33 -22.78 16 14 C 0.16 3.96 2.32 45.15 0.10 4.06 16 15 H 0.06 1.92 6.40 -2.39 -0.02 1.91 16 16 C -0.16 -3.81 5.70 30.68 0.17 -3.64 16 17 C 0.06 1.22 6.55 72.01 0.47 1.69 16 18 O -0.37 -6.98 10.17 -148.98 -1.52 -8.50 16 19 C 0.09 1.57 0.96 -10.31 -0.01 1.56 16 20 C -0.13 -1.65 6.43 31.76 0.20 -1.45 16 21 C 0.04 0.55 7.73 72.70 0.56 1.12 16 22 O -0.40 -8.62 11.53 -148.98 -1.72 -10.33 16 23 C 0.02 0.39 6.18 72.19 0.45 0.84 16 24 C -0.13 -2.28 4.06 30.53 0.12 -2.16 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.40 14.21 8.34 -92.71 -0.77 13.44 16 29 H 0.41 8.51 8.62 -92.71 -0.80 7.71 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.06 6.65 -2.39 -0.02 1.04 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 1.02 7.84 -2.39 -0.02 1.00 16 35 H 0.11 1.09 8.07 -2.38 -0.02 1.07 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.37 6.73 -2.39 -0.02 1.35 16 39 H 0.08 1.89 6.66 -2.39 -0.02 1.88 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.06 329.61 -1.74 -76.80 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.52 Total: 24.57 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 4.77 Total: 19.22 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -4.72 Total: -112.72 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -3.30 Total: -52.20 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -75.06 -1.74 -76.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321357266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.892 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds