Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48492 * 109.47331 * 270.00447 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00706 * 3 2 1 6 6 H 1.48502 * 109.46751 * 150.00424 * 3 2 1 7 7 C 1.37880 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99857 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99973 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00592 * 359.73053 * 12 11 10 14 14 C 1.49456 * 119.99966 * 180.02562 * 12 11 10 15 15 O 1.21355 * 119.99792 * 359.72883 * 14 12 11 16 16 N 1.34777 * 119.99994 * 179.73002 * 14 12 11 17 17 C 1.46496 * 119.99614 * 180.02562 * 16 14 12 18 18 H 1.09002 * 109.63685 * 34.99780 * 17 16 14 19 19 C 1.50293 * 109.63390 * 155.39662 * 17 16 14 20 20 C 1.54357 * 113.09609 * 211.60654 * 19 17 16 21 21 C 1.54349 * 111.52759 * 319.30520 * 20 19 17 22 22 O 1.39957 * 112.56905 * 319.15414 * 21 20 19 23 23 C 1.44224 * 112.36742 * 97.12528 * 22 21 20 24 24 C 1.45987 * 112.10483 * 277.40562 * 23 22 21 25 25 H 0.97004 * 119.99485 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47543 * 60.00149 * 9 7 2 27 27 H 1.08993 * 109.47202 * 299.99623 * 9 7 2 28 28 H 1.09007 * 109.46761 * 59.99814 * 10 9 7 29 29 H 1.08997 * 109.46989 * 300.00628 * 10 9 7 30 30 H 0.97004 * 120.00009 * 0.02562 * 11 10 9 31 31 H 0.96996 * 119.99887 * 359.97438 * 16 14 12 32 32 H 1.09003 * 108.78221 * 332.67708 * 19 17 16 33 33 H 1.08998 * 108.78577 * 90.88298 * 19 17 16 34 34 H 1.09000 * 109.17141 * 198.69052 * 20 19 17 35 35 H 1.08998 * 108.86671 * 79.71542 * 20 19 17 36 36 H 1.09000 * 108.86474 * 198.35767 * 21 20 19 37 37 H 1.09005 * 108.86735 * 79.95361 * 21 20 19 38 38 H 1.09004 * 108.95755 * 156.72899 * 23 22 21 39 39 H 1.09002 * 108.88546 * 38.04046 * 23 22 21 40 40 H 1.08999 * 109.02987 * 299.48699 * 24 23 22 41 41 H 1.09003 * 109.02804 * 180.64273 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6367 -0.0022 12 6 6.1602 -3.8039 -0.0018 13 8 5.5536 -4.8549 0.0045 14 6 7.6548 -3.8040 -0.0024 15 8 8.2616 -2.7530 -0.0083 16 7 8.3286 -4.9712 0.0035 17 6 9.7936 -4.9712 0.0035 18 1 10.1599 -4.1272 0.5880 19 6 10.2986 -6.2552 0.5993 20 6 11.6410 -6.0907 1.3433 21 6 12.6018 -5.1558 0.5782 22 8 12.5754 -5.3732 -0.8042 23 6 11.7101 -4.4448 -1.4894 24 6 10.3119 -4.8622 -1.4455 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8744 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6584 -3.1503 0.8892 30 1 5.9715 -1.7967 -0.0025 31 1 7.8436 -5.8112 0.0086 32 1 9.5531 -6.6351 1.2979 33 1 10.4315 -6.9846 -0.1997 34 1 12.1098 -7.0682 1.4564 35 1 11.4477 -5.6720 2.3309 36 1 13.6164 -5.3194 0.9413 37 1 12.3207 -4.1217 0.7777 38 1 12.0247 -4.3698 -2.5303 39 1 11.8021 -3.4650 -1.0206 40 1 10.2154 -5.8331 -1.9315 41 1 9.7066 -4.1341 -1.9856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323101114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -126.876410 kcal Electronic energy + Delta-G solvation = -22262.635350 eV Core-core repulsion = 18756.321793 eV Total energy + Delta-G solvation = -3506.313557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86249 -39.77119 -38.32635 -36.19853 -35.18624 -33.27021 -32.85526 -32.34929 -30.31090 -27.59627 -26.19718 -25.17440 -23.29401 -21.89278 -20.92206 -20.84069 -20.16522 -18.27389 -17.33199 -16.94000 -16.83734 -16.22999 -16.03006 -15.54914 -15.31072 -14.98524 -14.69226 -14.24437 -14.19573 -13.67613 -13.61982 -13.32103 -13.10297 -12.74916 -12.63508 -12.15632 -11.73058 -11.57419 -11.51480 -11.41540 -11.27011 -11.05625 -10.81770 -10.46691 -10.32859 -10.04438 -9.97881 -9.49275 -9.43914 -9.33014 -8.80559 -8.63293 -6.14211 -4.15043 1.49230 2.40207 3.24952 3.30476 3.33031 3.34651 3.46758 3.73864 4.19165 4.33890 4.35955 4.51908 4.59022 4.65220 4.73402 4.87382 5.04062 5.11680 5.18867 5.20702 5.26124 5.37028 5.58015 5.62805 5.68511 5.69655 5.82296 5.94081 6.07706 6.09062 6.44346 6.48078 6.83844 6.91250 7.07097 7.16024 7.52702 7.60480 7.81055 8.17409 8.39822 8.89027 9.45679 10.98547 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036401 B = 0.002792 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.022960 B =10024.620650 C =10416.637843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.498 3.502 13 O -0.529 6.529 14 C 0.510 3.490 15 O -0.521 6.521 16 N -0.700 5.700 17 C 0.145 3.855 18 H 0.092 0.908 19 C -0.129 4.129 20 C -0.141 4.141 21 C 0.054 3.946 22 O -0.370 6.370 23 C 0.062 3.938 24 C -0.164 4.164 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.409 0.591 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.791 -10.782 0.335 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.277 3.723 13 O -0.406 6.406 14 C 0.291 3.709 15 O -0.397 6.397 16 N -0.353 5.353 17 C 0.041 3.959 18 H 0.110 0.890 19 C -0.167 4.167 20 C -0.180 4.180 21 C -0.024 4.024 22 O -0.289 6.289 23 C -0.015 4.015 24 C -0.203 4.203 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.244 0.756 31 H 0.250 0.750 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.693 -10.786 0.243 27.866 hybrid contribution 0.048 1.088 0.123 1.096 sum 25.741 -9.698 0.367 27.509 Atomic orbital electron populations 1.69901 1.06293 1.27136 1.50192 1.24989 0.94774 0.99181 0.94248 0.86761 0.80326 0.83474 0.78618 1.20148 1.21219 1.18965 1.20875 0.88428 0.94962 1.52027 0.90534 1.19822 0.98118 0.90955 0.97225 1.21722 0.74697 1.00862 1.02188 1.46210 1.09534 1.08010 1.70393 1.19967 0.87686 0.85262 0.79371 1.90750 1.69656 1.31005 1.49192 1.20467 0.89028 0.84340 0.77108 1.90744 1.70065 1.31054 1.47808 1.45894 1.06850 1.09107 1.73491 1.20719 0.78931 0.99789 0.96495 0.89007 1.21584 0.97336 0.96834 1.00967 1.22502 0.94971 1.01435 0.99056 1.22386 0.99447 0.98400 0.82187 1.87787 1.65249 1.57397 1.18422 1.21518 0.89513 0.91964 0.98503 1.21596 0.97488 1.03901 0.97266 0.92485 0.95729 0.96157 0.91254 0.91219 0.75580 0.75031 0.90890 0.90690 0.90826 0.90982 0.90115 0.92916 0.88937 0.92415 0.90493 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.51 5.61 -4.04 -0.02 2.49 16 11 N -0.69 -11.66 5.55 -60.73 -0.34 -12.00 16 12 C 0.50 8.03 7.89 -11.58 -0.09 7.94 16 13 O -0.53 -9.56 16.48 5.50 0.09 -9.47 16 14 C 0.51 7.02 7.80 -11.58 -0.09 6.93 16 15 O -0.52 -8.01 16.15 5.49 0.09 -7.92 16 16 N -0.70 -7.43 4.99 -54.90 -0.27 -7.71 16 17 C 0.15 1.29 2.12 -68.62 -0.15 1.14 16 18 H 0.09 0.91 6.54 -51.93 -0.34 0.57 16 19 C -0.13 -0.92 5.05 -27.37 -0.14 -1.05 16 20 C -0.14 -0.88 6.26 -25.31 -0.16 -1.03 16 21 C 0.05 0.36 6.09 37.86 0.23 0.59 16 22 O -0.37 -3.16 10.35 -32.81 -0.34 -3.50 16 23 C 0.06 0.47 6.12 33.83 0.21 0.68 16 24 C -0.16 -1.37 5.14 -29.39 -0.15 -1.52 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 27 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.41 6.38 7.94 -40.82 -0.32 6.06 16 31 H 0.41 3.98 8.00 -40.82 -0.33 3.65 16 32 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 33 H 0.07 0.53 7.35 -51.93 -0.38 0.15 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.34 6.54 -51.93 -0.34 0.00 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.43 7.34 -51.93 -0.38 0.05 16 40 H 0.08 0.61 7.55 -51.93 -0.39 0.21 16 41 H 0.08 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -31.74 334.18 -6.74 -38.48 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.20 Total: 4.42 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.91 Total: 2.61 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.16 Total: -46.00 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.16 Total: -20.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.74 -6.74 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323101114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.396 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds