Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48492 * 109.47331 * 270.00447 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00706 * 3 2 1 6 6 H 1.48502 * 109.46751 * 150.00424 * 3 2 1 7 7 C 1.37880 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99857 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99973 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00592 * 359.73053 * 12 11 10 14 14 C 1.49456 * 119.99966 * 180.02562 * 12 11 10 15 15 O 1.21355 * 119.99792 * 359.72883 * 14 12 11 16 16 N 1.34777 * 119.99994 * 179.73002 * 14 12 11 17 17 C 1.46496 * 119.99614 * 180.02562 * 16 14 12 18 18 H 1.09002 * 109.63685 * 34.99780 * 17 16 14 19 19 C 1.50293 * 109.63390 * 155.39662 * 17 16 14 20 20 C 1.54357 * 113.09609 * 211.60654 * 19 17 16 21 21 C 1.54349 * 111.52759 * 319.30520 * 20 19 17 22 22 O 1.39957 * 112.56905 * 319.15414 * 21 20 19 23 23 C 1.44224 * 112.36742 * 97.12528 * 22 21 20 24 24 C 1.45987 * 112.10483 * 277.40562 * 23 22 21 25 25 H 0.97004 * 119.99485 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47543 * 60.00149 * 9 7 2 27 27 H 1.08993 * 109.47202 * 299.99623 * 9 7 2 28 28 H 1.09007 * 109.46761 * 59.99814 * 10 9 7 29 29 H 1.08997 * 109.46989 * 300.00628 * 10 9 7 30 30 H 0.97004 * 120.00009 * 0.02562 * 11 10 9 31 31 H 0.96996 * 119.99887 * 359.97438 * 16 14 12 32 32 H 1.09003 * 108.78221 * 332.67708 * 19 17 16 33 33 H 1.08998 * 108.78577 * 90.88298 * 19 17 16 34 34 H 1.09000 * 109.17141 * 198.69052 * 20 19 17 35 35 H 1.08998 * 108.86671 * 79.71542 * 20 19 17 36 36 H 1.09000 * 108.86474 * 198.35767 * 21 20 19 37 37 H 1.09005 * 108.86735 * 79.95361 * 21 20 19 38 38 H 1.09004 * 108.95755 * 156.72899 * 23 22 21 39 39 H 1.09002 * 108.88546 * 38.04046 * 23 22 21 40 40 H 1.08999 * 109.02987 * 299.48699 * 24 23 22 41 41 H 1.09003 * 109.02804 * 180.64273 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6367 -0.0022 12 6 6.1602 -3.8039 -0.0018 13 8 5.5536 -4.8549 0.0045 14 6 7.6548 -3.8040 -0.0024 15 8 8.2616 -2.7530 -0.0083 16 7 8.3286 -4.9712 0.0035 17 6 9.7936 -4.9712 0.0035 18 1 10.1599 -4.1272 0.5880 19 6 10.2986 -6.2552 0.5993 20 6 11.6410 -6.0907 1.3433 21 6 12.6018 -5.1558 0.5782 22 8 12.5754 -5.3732 -0.8042 23 6 11.7101 -4.4448 -1.4894 24 6 10.3119 -4.8622 -1.4455 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8744 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6584 -3.1503 0.8892 30 1 5.9715 -1.7967 -0.0025 31 1 7.8436 -5.8112 0.0086 32 1 9.5531 -6.6351 1.2979 33 1 10.4315 -6.9846 -0.1997 34 1 12.1098 -7.0682 1.4564 35 1 11.4477 -5.6720 2.3309 36 1 13.6164 -5.3194 0.9413 37 1 12.3207 -4.1217 0.7777 38 1 12.0247 -4.3698 -2.5303 39 1 11.8021 -3.4650 -1.0206 40 1 10.2154 -5.8331 -1.9315 41 1 9.7066 -4.1341 -1.9856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323101114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -151.347202 kcal Electronic energy + Delta-G solvation = -22263.696483 eV Core-core repulsion = 18756.321793 eV Total energy + Delta-G solvation = -3507.374690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90626 -40.63597 -39.46224 -37.18822 -36.60456 -34.84098 -33.84672 -33.16257 -32.13512 -28.39780 -27.46737 -26.20695 -24.55814 -22.72176 -22.49428 -21.63381 -21.26931 -19.43346 -19.03132 -18.16488 -17.55850 -17.23179 -17.14911 -16.37915 -16.28955 -16.20424 -16.01562 -15.73245 -15.39575 -14.92716 -14.60592 -14.55011 -14.21511 -13.89749 -13.40497 -13.39207 -13.07827 -12.97915 -12.65908 -12.24403 -12.21461 -12.17351 -12.10309 -11.78885 -11.67575 -11.51988 -11.34121 -10.79819 -10.74062 -10.60300 -10.33835 -10.24228 -8.30983 -6.37905 0.29027 1.26954 1.39297 1.40859 1.52049 2.08859 2.35795 2.60501 2.91698 3.04305 3.38575 3.55306 3.73743 4.00627 4.03057 4.19228 4.25114 4.26268 4.37696 4.46316 4.54277 4.60714 4.65273 4.71249 4.85176 4.95492 4.97533 5.06917 5.11368 5.18856 5.21563 5.24621 5.29361 5.36092 5.57939 5.89647 6.19643 6.28807 6.34131 6.66689 6.72545 6.90506 7.26807 8.85335 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036401 B = 0.002792 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.022960 B =10024.620650 C =10416.637843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.142 3.858 11 N -0.687 5.687 12 C 0.499 3.501 13 O -0.549 6.549 14 C 0.518 3.482 15 O -0.537 6.537 16 N -0.684 5.684 17 C 0.144 3.856 18 H 0.085 0.915 19 C -0.126 4.126 20 C -0.139 4.139 21 C 0.047 3.953 22 O -0.383 6.383 23 C 0.061 3.939 24 C -0.159 4.159 25 H 0.268 0.732 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.418 0.582 31 H 0.419 0.581 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.557 -10.410 0.494 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.339 5.339 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.298 3.702 15 O -0.414 6.414 16 N -0.336 5.336 17 C 0.040 3.960 18 H 0.103 0.897 19 C -0.164 4.164 20 C -0.177 4.177 21 C -0.030 4.030 22 O -0.302 6.302 23 C -0.015 4.015 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.257 0.743 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 28.506 -10.454 0.403 30.365 hybrid contribution -0.831 0.837 0.076 1.182 sum 27.675 -9.617 0.479 29.302 Atomic orbital electron populations 1.70060 1.08419 1.28399 1.51901 1.26003 0.95637 1.03619 0.93763 0.85615 0.79634 0.77827 0.79309 1.19069 1.21179 1.16374 1.21205 0.91216 0.93569 1.51509 0.94604 1.19689 0.94740 0.92875 0.98155 1.21282 0.76575 0.98963 1.01306 1.45978 1.08218 1.08933 1.70793 1.20379 0.88889 0.84485 0.78247 1.90742 1.70470 1.31680 1.49901 1.19926 0.87609 0.85029 0.77664 1.90746 1.69799 1.31692 1.49147 1.45908 1.07728 1.08350 1.71660 1.20892 0.77419 1.00599 0.97089 0.89733 1.21566 0.97976 0.95692 1.01205 1.22501 0.94234 1.01874 0.99095 1.22533 1.00380 0.98604 0.81526 1.87772 1.65373 1.57694 1.19329 1.21538 0.88949 0.91821 0.99183 1.21553 0.97775 1.03859 0.96552 0.92299 0.94605 0.94731 0.92259 0.92249 0.74543 0.74310 0.90379 0.90437 0.89973 0.90258 0.88916 0.92889 0.87867 0.92366 0.89933 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 42.49 27.47 68.60 1.88 44.37 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 7 C -0.54 -30.07 9.66 25.60 0.25 -29.83 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 9 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 10 C 0.14 5.55 5.61 86.38 0.48 6.04 16 11 N -0.69 -22.32 5.55 -464.41 -2.58 -24.90 16 12 C 0.50 15.56 7.89 87.27 0.69 16.25 16 13 O -0.55 -19.48 16.48 -3.25 -0.05 -19.53 16 14 C 0.52 13.48 7.80 87.27 0.68 14.16 16 15 O -0.54 -15.58 16.15 -3.26 -0.05 -15.64 16 16 N -0.68 -13.38 4.99 -445.97 -2.22 -15.61 16 17 C 0.14 2.29 2.12 44.55 0.09 2.39 16 18 H 0.08 1.54 6.54 -2.39 -0.02 1.52 16 19 C -0.13 -1.52 5.05 30.18 0.15 -1.37 16 20 C -0.14 -1.40 6.26 31.51 0.20 -1.20 16 21 C 0.05 0.54 6.09 72.44 0.44 0.98 16 22 O -0.38 -5.82 10.35 -140.33 -1.45 -7.27 16 23 C 0.06 0.84 6.12 69.83 0.43 1.26 16 24 C -0.16 -2.39 5.14 28.87 0.15 -2.25 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 27 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 28 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.42 12.20 7.94 -92.71 -0.74 11.46 16 31 H 0.42 7.36 8.00 -92.71 -0.74 6.62 16 32 H 0.08 0.88 7.89 -2.39 -0.02 0.86 16 33 H 0.08 0.92 7.35 -2.39 -0.02 0.90 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.60 6.54 -2.38 -0.02 0.58 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 0.78 7.34 -2.39 -0.02 0.76 16 40 H 0.08 1.15 7.55 -2.39 -0.02 1.13 16 41 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 Total: -1.00 -68.27 334.18 -0.51 -68.78 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.48 Total: 21.31 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.15 Total: 6.70 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.50 Total: -98.71 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.56 Total: -42.44 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Total: -68.27 -0.51 -68.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323101114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.572 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds