Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.34786 * 119.99733 * 180.02562 * 11 10 9 13 13 O 1.21343 * 119.99744 * 359.97438 * 12 11 10 14 14 C 1.49452 * 119.99830 * 179.97438 * 12 11 10 15 15 O 1.21353 * 119.99962 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99992 * 179.97438 * 14 12 11 17 17 C 1.46492 * 120.00231 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.53979 * 325.16381 * 17 16 14 19 19 C 1.54207 * 109.54070 * 205.00042 * 17 16 14 20 20 C 1.46290 * 111.98905 * 162.60350 * 19 17 16 21 21 C 1.54112 * 112.19889 * 61.41393 * 20 19 17 22 22 O 1.40317 * 108.70945 * 280.43665 * 21 20 19 23 23 C 1.43995 * 116.57591 * 95.04316 * 22 21 20 24 24 C 1.50627 * 109.53837 * 85.41485 * 17 16 14 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 0.97000 * 120.00580 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99521 * 0.02562 * 16 14 12 32 32 H 1.08996 * 108.98061 * 283.25216 * 19 17 16 33 33 H 1.09008 * 108.97810 * 42.04475 * 19 17 16 34 34 H 1.08999 * 108.93821 * 182.12187 * 20 19 17 35 35 H 1.09009 * 108.93210 * 300.80475 * 20 19 17 36 36 H 1.09002 * 109.59920 * 40.20968 * 21 20 19 37 37 H 1.09004 * 109.59513 * 160.51554 * 21 20 19 38 38 H 1.08996 * 108.69288 * 78.91242 * 23 22 21 39 39 H 1.08997 * 108.69473 * 197.01040 * 23 22 21 40 40 H 1.08999 * 108.88277 * 330.96932 * 24 17 16 41 41 H 1.09002 * 108.88285 * 89.43413 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 7 1.5130 -4.9307 0.0254 12 6 2.1870 -6.0979 0.0321 13 8 3.4004 -6.0978 0.0316 14 6 1.4398 -7.3922 0.0399 15 8 0.2262 -7.3922 0.0399 16 7 2.1136 -8.5593 0.0460 17 6 1.3813 -9.8280 0.0532 18 1 0.4690 -9.7190 0.6397 19 6 2.2643 -10.9298 0.6730 20 6 1.4799 -12.0948 1.0824 21 6 0.7606 -12.7597 -0.1074 22 8 -0.3942 -12.0204 -0.4054 23 6 -0.2737 -11.0265 -1.4403 24 6 1.0307 -10.2152 -1.3596 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.5430 -4.9308 0.0261 31 1 3.0837 -8.5592 0.0457 32 1 3.0075 -11.2428 -0.0602 33 1 2.7765 -10.5245 1.5457 34 1 2.1445 -12.8236 1.5461 35 1 0.7350 -11.7804 1.8136 36 1 1.4214 -12.7709 -0.9742 37 1 0.4858 -13.7811 0.1560 38 1 -0.3163 -11.5240 -2.4091 39 1 -1.1160 -10.3389 -1.3641 40 1 0.9204 -9.3099 -1.9565 41 1 1.8434 -10.8118 -1.7739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323101115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -136.592277 kcal Electronic energy + Delta-G solvation = -22232.822263 eV Core-core repulsion = 18726.087395 eV Total energy + Delta-G solvation = -3506.734868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80946 -39.66406 -38.27850 -36.18993 -35.24087 -33.68707 -33.10050 -31.94647 -29.64272 -27.28175 -26.22362 -24.93817 -23.28524 -21.55992 -21.36943 -20.87632 -20.15571 -18.41007 -17.24697 -17.19647 -16.81703 -16.25312 -15.79576 -15.64307 -15.18384 -14.86611 -14.45220 -14.37792 -13.89349 -13.75884 -13.63887 -13.45297 -13.15354 -12.66526 -12.30408 -12.09418 -11.75385 -11.70153 -11.47847 -11.27146 -11.13297 -11.03191 -10.86440 -10.50898 -10.21779 -10.06246 -9.93015 -9.50719 -9.40908 -8.79305 -8.72368 -8.41025 -6.46508 -4.17441 1.52331 2.42151 3.32782 3.41000 3.44334 3.45720 3.60337 3.78683 4.10424 4.32960 4.47725 4.50966 4.61248 4.65193 4.71776 4.89528 5.05502 5.07296 5.17824 5.31359 5.31693 5.47425 5.53783 5.64060 5.69333 5.75236 5.84789 6.00586 6.09066 6.12064 6.46073 6.54145 6.95845 7.01536 7.17929 7.28172 7.56413 7.82883 8.02065 8.21804 8.34849 8.76437 9.54964 10.94672 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045835 B = 0.002595 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.745673 B =10787.329580 C =11136.951356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.604 4.604 8 H 0.054 0.946 9 C -0.002 4.002 10 C 0.126 3.874 11 N -0.688 5.688 12 C 0.497 3.503 13 O -0.532 6.532 14 C 0.509 3.491 15 O -0.518 6.518 16 N -0.703 5.703 17 C 0.146 3.854 18 H 0.099 0.901 19 C -0.126 4.126 20 C -0.149 4.149 21 C 0.064 3.936 22 O -0.384 6.384 23 C 0.068 3.932 24 C -0.166 4.166 25 H 0.269 0.731 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.410 0.590 31 H 0.412 0.588 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -26.124 -0.963 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.643 4.643 8 H 0.073 0.927 9 C -0.040 4.040 10 C 0.005 3.995 11 N -0.339 5.339 12 C 0.277 3.723 13 O -0.410 6.410 14 C 0.290 3.710 15 O -0.392 6.392 16 N -0.356 5.356 17 C 0.042 3.958 18 H 0.117 0.883 19 C -0.164 4.164 20 C -0.188 4.188 21 C -0.013 4.013 22 O -0.302 6.302 23 C -0.009 4.009 24 C -0.205 4.205 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.245 0.755 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.763 -24.463 -0.878 24.634 hybrid contribution 0.556 -1.612 -0.168 1.713 sum 3.319 -26.074 -1.046 26.306 Atomic orbital electron populations 1.70768 1.06902 1.30712 1.46073 1.25901 0.96491 1.02854 0.93442 0.83459 0.74647 0.74777 0.76871 1.21322 1.21339 1.20911 1.21875 0.94540 0.91218 1.56638 0.92745 1.19489 0.94852 0.92669 0.96969 1.21769 0.95913 0.80297 1.01563 1.46238 1.11714 1.05848 1.70126 1.20004 0.87730 0.85270 0.79323 1.90731 1.13226 1.87538 1.49493 1.20445 0.87781 0.85558 0.77254 1.90762 1.13370 1.87620 1.47489 1.45869 1.11344 1.04660 1.73729 1.20770 0.96458 0.82041 0.96545 0.88256 1.20882 0.98458 0.95294 1.01750 1.21074 1.00267 0.97626 0.99790 1.22375 0.87708 0.94871 0.96389 1.87497 1.34522 1.50787 1.57430 1.22898 0.97776 0.89977 0.90234 1.22400 0.98693 1.01626 0.97787 0.92011 0.96561 0.96560 0.91689 0.91688 0.75485 0.75198 0.91324 0.90706 0.90547 0.90606 0.92919 0.89663 0.92765 0.88834 0.89854 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.37 13.65 55.43 0.76 -26.61 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 24.96 29.90 -169.99 -5.08 19.88 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.60 -16.85 9.11 -34.44 -0.31 -17.16 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.00 -0.06 4.40 -27.88 -0.12 -0.18 16 10 C 0.13 2.66 5.61 -4.04 -0.02 2.63 16 11 N -0.69 -12.46 5.55 -60.73 -0.34 -12.80 16 12 C 0.50 8.46 7.89 -11.58 -0.09 8.37 16 13 O -0.53 -9.95 16.48 5.50 0.09 -9.86 16 14 C 0.51 7.44 7.70 -11.59 -0.09 7.35 16 15 O -0.52 -8.53 16.14 5.49 0.09 -8.44 16 16 N -0.70 -7.82 4.99 -54.79 -0.27 -8.09 16 17 C 0.15 1.38 2.15 -68.49 -0.15 1.23 16 18 H 0.10 1.15 7.26 -51.93 -0.38 0.77 16 19 C -0.13 -0.86 4.83 -29.29 -0.14 -1.00 16 20 C -0.15 -0.94 5.47 -29.34 -0.16 -1.10 16 21 C 0.06 0.42 6.38 37.74 0.24 0.66 16 22 O -0.38 -3.58 10.17 -33.68 -0.34 -3.92 16 23 C 0.07 0.57 6.67 37.58 0.25 0.82 16 24 C -0.17 -1.42 5.01 -27.49 -0.14 -1.55 16 25 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 26 H 0.02 0.41 8.01 -51.92 -0.42 0.00 16 27 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.41 7.03 7.94 -40.82 -0.32 6.70 16 31 H 0.41 4.09 8.08 -40.82 -0.33 3.76 16 32 H 0.07 0.39 7.60 -51.93 -0.39 -0.01 16 33 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.57 8.13 -51.92 -0.42 0.15 16 36 H 0.05 0.30 6.98 -51.93 -0.36 -0.07 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 41 H 0.07 0.48 6.84 -51.93 -0.35 0.12 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -32.24 337.50 -7.11 -39.34 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.26 Total: 4.95 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.83 Total: 0.47 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.15 Total: -47.50 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.16 Total: -22.22 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.24 -7.11 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323101115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.250 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds