Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.34786 * 119.99733 * 180.02562 * 11 10 9 13 13 O 1.21343 * 119.99744 * 359.97438 * 12 11 10 14 14 C 1.49452 * 119.99830 * 179.97438 * 12 11 10 15 15 O 1.21353 * 119.99962 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99992 * 179.97438 * 14 12 11 17 17 C 1.46492 * 120.00231 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.53979 * 325.16381 * 17 16 14 19 19 C 1.54207 * 109.54070 * 205.00042 * 17 16 14 20 20 C 1.46290 * 111.98905 * 162.60350 * 19 17 16 21 21 C 1.54112 * 112.19889 * 61.41393 * 20 19 17 22 22 O 1.40317 * 108.70945 * 280.43665 * 21 20 19 23 23 C 1.43995 * 116.57591 * 95.04316 * 22 21 20 24 24 C 1.50627 * 109.53837 * 85.41485 * 17 16 14 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 0.97000 * 120.00580 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99521 * 0.02562 * 16 14 12 32 32 H 1.08996 * 108.98061 * 283.25216 * 19 17 16 33 33 H 1.09008 * 108.97810 * 42.04475 * 19 17 16 34 34 H 1.08999 * 108.93821 * 182.12187 * 20 19 17 35 35 H 1.09009 * 108.93210 * 300.80475 * 20 19 17 36 36 H 1.09002 * 109.59920 * 40.20968 * 21 20 19 37 37 H 1.09004 * 109.59513 * 160.51554 * 21 20 19 38 38 H 1.08996 * 108.69288 * 78.91242 * 23 22 21 39 39 H 1.08997 * 108.69473 * 197.01040 * 23 22 21 40 40 H 1.08999 * 108.88277 * 330.96932 * 24 17 16 41 41 H 1.09002 * 108.88285 * 89.43413 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 7 1.5130 -4.9307 0.0254 12 6 2.1870 -6.0979 0.0321 13 8 3.4004 -6.0978 0.0316 14 6 1.4398 -7.3922 0.0399 15 8 0.2262 -7.3922 0.0399 16 7 2.1136 -8.5593 0.0460 17 6 1.3813 -9.8280 0.0532 18 1 0.4690 -9.7190 0.6397 19 6 2.2643 -10.9298 0.6730 20 6 1.4799 -12.0948 1.0824 21 6 0.7606 -12.7597 -0.1074 22 8 -0.3942 -12.0204 -0.4054 23 6 -0.2737 -11.0265 -1.4403 24 6 1.0307 -10.2152 -1.3596 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.5430 -4.9308 0.0261 31 1 3.0837 -8.5592 0.0457 32 1 3.0075 -11.2428 -0.0602 33 1 2.7765 -10.5245 1.5457 34 1 2.1445 -12.8236 1.5461 35 1 0.7350 -11.7804 1.8136 36 1 1.4214 -12.7709 -0.9742 37 1 0.4858 -13.7811 0.1560 38 1 -0.3163 -11.5240 -2.4091 39 1 -1.1160 -10.3389 -1.3641 40 1 0.9204 -9.3099 -1.9565 41 1 1.8434 -10.8118 -1.7739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323101115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -160.866690 kcal Electronic energy + Delta-G solvation = -22233.874881 eV Core-core repulsion = 18726.087395 eV Total energy + Delta-G solvation = -3507.787486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94984 -40.58088 -39.47627 -37.26720 -36.75428 -35.13404 -34.31066 -32.75503 -31.51386 -28.10805 -27.17178 -26.38363 -24.81452 -23.18946 -22.15940 -21.73868 -21.32009 -19.71098 -18.80557 -18.18838 -17.86336 -17.40902 -17.10428 -16.64231 -16.40158 -15.86652 -15.75613 -15.61842 -15.18742 -15.01983 -14.75368 -14.35880 -14.26301 -14.02018 -13.73135 -13.49427 -13.00800 -12.91434 -12.63464 -12.34023 -12.24153 -12.13353 -11.89761 -11.89150 -11.75199 -11.43249 -11.01739 -10.69040 -10.60946 -10.58556 -10.35003 -10.26772 -8.73269 -6.45148 0.22854 1.20994 1.54843 1.63143 1.81323 2.02621 2.48856 2.60544 2.89978 3.12683 3.33001 3.46544 3.75825 3.89519 4.00595 4.12676 4.18713 4.22664 4.27002 4.46779 4.55880 4.58914 4.61518 4.72648 4.81709 4.91263 4.98509 5.02555 5.08879 5.16028 5.20330 5.21394 5.26938 5.34499 5.82985 5.88846 6.12432 6.25843 6.44699 6.50615 6.64128 6.83459 7.36106 8.68815 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045835 B = 0.002595 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.745673 B =10787.329580 C =11136.951356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.034 4.034 3 Si 1.122 2.878 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.621 4.621 8 H 0.056 0.944 9 C 0.002 3.998 10 C 0.145 3.855 11 N -0.691 5.691 12 C 0.501 3.499 13 O -0.546 6.546 14 C 0.515 3.485 15 O -0.540 6.540 16 N -0.682 5.682 17 C 0.142 3.858 18 H 0.075 0.925 19 C -0.120 4.120 20 C -0.147 4.147 21 C 0.056 3.944 22 O -0.405 6.405 23 C 0.069 3.931 24 C -0.162 4.162 25 H 0.258 0.742 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.421 0.579 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -27.592 -1.139 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.943 3.057 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.659 4.659 8 H 0.075 0.925 9 C -0.035 4.035 10 C 0.022 3.978 11 N -0.342 5.342 12 C 0.281 3.719 13 O -0.425 6.425 14 C 0.295 3.705 15 O -0.417 6.417 16 N -0.335 5.335 17 C 0.039 3.961 18 H 0.093 0.907 19 C -0.158 4.158 20 C -0.185 4.185 21 C -0.020 4.020 22 O -0.324 6.324 23 C -0.008 4.008 24 C -0.201 4.201 25 H 0.068 0.932 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.258 0.742 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.504 -25.998 -1.049 26.406 hybrid contribution 0.027 -1.276 -0.101 1.280 sum 4.532 -27.274 -1.150 27.672 Atomic orbital electron populations 1.70894 1.07943 1.30121 1.48206 1.27434 0.96556 1.06822 0.92441 0.82870 0.74173 0.70834 0.77860 1.19747 1.19289 1.20822 1.22306 0.94991 0.92639 1.55946 0.92524 1.19350 0.95068 0.93379 0.95728 1.21311 0.94761 0.80466 1.01232 1.46061 1.11861 1.05463 1.70804 1.20377 0.87581 0.85719 0.78195 1.90719 1.13937 1.87888 1.49946 1.19952 0.87259 0.85489 0.77804 1.90766 1.14080 1.87710 1.49129 1.45851 1.11807 1.04222 1.71622 1.20967 0.96089 0.81784 0.97270 0.90664 1.20881 0.98300 0.94327 1.02241 1.21066 1.00162 0.97860 0.99426 1.22597 0.87267 0.95135 0.97016 1.87476 1.36155 1.51086 1.57731 1.22869 0.97075 0.89913 0.90948 1.22358 0.99633 1.01334 0.96741 0.93242 0.97757 0.97695 0.91974 0.92016 0.74971 0.74163 0.89179 0.90451 0.88234 0.92338 0.91406 0.88381 0.91049 0.90483 0.91423 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.65 21.45 0.29 -56.73 16 2 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 3 Si 1.12 49.51 29.90 68.60 2.05 51.57 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.62 -34.73 9.11 25.60 0.23 -34.50 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.00 0.11 4.40 29.85 0.13 0.24 16 10 C 0.15 6.12 5.61 86.38 0.48 6.61 16 11 N -0.69 -25.09 5.55 -464.42 -2.58 -27.67 16 12 C 0.50 16.80 7.89 87.27 0.69 17.49 16 13 O -0.55 -19.92 16.48 -3.22 -0.05 -19.97 16 14 C 0.51 14.82 7.70 87.27 0.67 15.49 16 15 O -0.54 -17.91 16.14 -3.26 -0.05 -17.96 16 16 N -0.68 -14.31 4.99 -445.60 -2.22 -16.54 16 17 C 0.14 2.50 2.15 44.63 0.10 2.60 16 18 H 0.08 1.74 7.26 -2.39 -0.02 1.72 16 19 C -0.12 -1.32 4.83 28.94 0.14 -1.18 16 20 C -0.15 -1.51 5.47 28.90 0.16 -1.35 16 21 C 0.06 0.61 6.38 72.36 0.46 1.07 16 22 O -0.41 -7.11 10.17 -143.42 -1.46 -8.56 16 23 C 0.07 1.09 6.67 72.26 0.48 1.58 16 24 C -0.16 -2.51 5.01 30.10 0.15 -2.36 16 25 H 0.26 15.81 7.22 -92.70 -0.67 15.14 16 26 H 0.00 0.22 8.01 -2.38 -0.02 0.20 16 27 H 0.00 0.25 8.00 -2.39 -0.02 0.23 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.41 14.44 7.94 -92.71 -0.74 13.70 16 31 H 0.42 7.52 8.08 -92.71 -0.75 6.77 16 32 H 0.09 0.66 7.60 -2.39 -0.02 0.64 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 36 H 0.07 0.53 6.98 -2.39 -0.02 0.51 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.29 7.83 -2.39 -0.02 1.27 16 41 H 0.09 1.00 6.84 -2.39 -0.02 0.98 16 Total: -1.00 -69.17 337.50 -0.20 -69.37 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.34 Total: 22.30 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 4.16 Total: 4.18 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -4.51 Total: -100.93 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.56 Total: -46.50 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.57 kcal Total: -69.17 -0.20 -69.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323101115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.494 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds