Wall clock time and date at job start Tue Mar 31 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.48911 * 2 1 4 4 C 1.53089 * 109.48392 * 239.96764 * 2 1 3 5 5 C 1.53188 * 109.16251 * 182.40788 * 4 2 1 6 6 H 1.09006 * 109.53939 * 297.02719 * 5 4 2 7 7 N 1.46496 * 109.54001 * 176.84906 * 5 4 2 8 8 C 1.34777 * 119.99610 * 155.00175 * 7 5 4 9 9 O 1.21346 * 119.99972 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99994 * 179.97438 * 8 7 5 11 11 O 1.21355 * 119.99792 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99994 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99610 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46847 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.53175 * 109.03418 * 56.97948 * 5 4 2 24 24 C 1.53086 * 109.16768 * 303.01922 * 23 5 4 25 25 O 1.42900 * 109.41590 * 57.60974 * 24 23 5 26 26 H 1.09004 * 109.46538 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47636 * 300.02907 * 1 2 3 28 28 H 1.08998 * 109.47377 * 60.03631 * 1 2 3 29 29 H 1.09002 * 109.52240 * 62.50189 * 4 2 1 30 30 H 1.08995 * 109.52204 * 302.30838 * 4 2 1 31 31 H 0.96996 * 120.00503 * 334.99810 * 7 5 4 32 32 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 33 33 H 1.09000 * 109.47627 * 59.99917 * 13 12 10 34 34 H 1.09002 * 109.46983 * 299.99313 * 13 12 10 35 35 H 1.09001 * 109.47671 * 59.99931 * 14 13 12 36 36 H 1.09006 * 109.47297 * 299.99651 * 14 13 12 37 37 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 38 38 H 1.08996 * 109.52328 * 62.92682 * 23 5 4 39 39 H 1.09002 * 109.52022 * 183.11168 * 23 5 4 40 40 H 1.09001 * 109.48214 * 297.62836 * 24 23 5 41 41 H 1.08995 * 109.49715 * 177.59994 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5712 -0.7709 -1.2120 6 1 3.9690 0.2436 -1.2422 7 7 4.0659 -1.5259 -2.3658 8 6 5.3080 -1.2991 -2.8372 9 8 6.0163 -0.4691 -2.3063 10 6 5.8130 -2.0698 -4.0140 11 8 5.1048 -2.9002 -4.5446 12 7 7.0549 -1.8425 -4.4858 13 6 7.5495 -2.5976 -5.6395 14 6 8.9751 -2.1500 -5.9688 15 6 9.4843 -2.9271 -7.1553 16 1 8.8543 -3.6667 -7.6271 17 6 10.7543 -2.6940 -7.6385 18 7 11.5217 -1.7938 -7.0637 19 14 11.3857 -3.6579 -9.1088 20 1 12.7688 -3.2224 -9.4292 21 1 11.3846 -5.1077 -8.7878 22 1 10.5055 -3.4091 -10.2787 23 6 4.0177 -1.4599 0.0811 24 6 3.4307 -0.7092 1.2792 25 8 2.0066 -0.6741 1.1665 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5142 0.8897 28 1 -0.3634 0.5133 -0.8903 29 1 1.7149 -0.1844 -2.1398 30 1 1.6445 -1.7375 -1.2707 31 1 3.4997 -2.1892 -2.7904 32 1 7.6207 -1.1785 -4.0618 33 1 6.9039 -2.4136 -6.4982 34 1 7.5477 -3.6621 -5.4050 35 1 9.6211 -2.3336 -5.1103 36 1 8.9766 -1.0855 -6.2035 37 1 11.1939 -1.2935 -6.3000 38 1 3.6614 -2.4900 0.0867 39 1 5.1059 -1.4496 0.1424 40 1 3.8192 0.3091 1.2960 41 1 3.7099 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323226910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:07 Heat of formation + Delta-G solvation = -142.254603 kcal Electronic energy + Delta-G solvation = -22033.047909 eV Core-core repulsion = 18526.067504 eV Total energy + Delta-G solvation = -3506.980405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80385 -39.72033 -38.29581 -35.85940 -35.09737 -33.24687 -33.13118 -31.84749 -29.65118 -28.15526 -25.77163 -24.38393 -23.48390 -22.28019 -21.32480 -20.93978 -20.19396 -18.48439 -17.02720 -16.75301 -16.70233 -16.25906 -15.88069 -15.46970 -15.31733 -14.92211 -14.53072 -14.21027 -13.93655 -13.76529 -13.63744 -13.03483 -12.98090 -12.75083 -12.32910 -12.30652 -11.94917 -11.73040 -11.55917 -11.51831 -11.40317 -11.04313 -10.82841 -10.51828 -10.24264 -10.10162 -10.03198 -9.49498 -9.45262 -8.80586 -8.73179 -8.41933 -6.47106 -4.18076 1.49748 2.39228 3.30943 3.34144 3.41120 3.42680 3.61495 3.73674 4.16646 4.35123 4.40854 4.47781 4.62202 4.65871 4.73912 4.89128 4.99481 5.03406 5.20964 5.24961 5.31011 5.34024 5.47536 5.54533 5.65342 5.72769 5.79984 5.99472 6.05885 6.08128 6.44929 6.52870 6.81568 6.93788 7.16459 7.27183 7.53923 7.80271 8.00899 8.20255 8.33650 8.75530 9.54225 10.93932 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050295 B = 0.002478 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.586462 B =11298.668829 C =11576.277057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.159 4.159 5 C 0.142 3.858 6 H 0.093 0.907 7 N -0.701 5.701 8 C 0.510 3.490 9 O -0.520 6.520 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.688 5.688 13 C 0.126 3.874 14 C -0.002 4.002 15 C -0.604 4.604 16 H 0.054 0.946 17 C 0.017 3.983 18 N -0.908 5.908 19 Si 1.072 2.928 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.169 4.169 24 C 0.066 3.934 25 O -0.380 6.380 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.413 0.587 32 H 0.409 0.591 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.269 0.731 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.499 3.760 15.578 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.080 0.920 4 C -0.197 4.197 5 C 0.038 3.962 6 H 0.111 0.889 7 N -0.354 5.354 8 C 0.291 3.709 9 O -0.395 6.395 10 C 0.277 3.723 11 O -0.409 6.409 12 N -0.339 5.339 13 C 0.004 3.996 14 C -0.040 4.040 15 C -0.643 4.643 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.543 5.543 19 Si 0.900 3.100 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.208 4.208 24 C -0.011 4.011 25 O -0.299 6.299 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.249 0.751 32 H 0.245 0.755 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.274 3.485 14.686 24.481 hybrid contribution -1.072 0.258 0.794 1.359 sum -20.346 3.744 15.481 25.838 Atomic orbital electron populations 1.21766 0.92588 1.03181 1.02673 1.22041 0.95403 0.95062 0.84272 0.91999 1.22567 0.94182 1.03210 0.99756 1.21079 0.93742 0.96658 0.84740 0.88880 1.45818 1.15422 1.42014 1.32141 1.20463 0.82459 0.83322 0.84653 1.90750 1.56039 1.33519 1.59200 1.19987 0.83524 0.84108 0.84708 1.90738 1.56502 1.34249 1.59418 1.46233 1.14084 1.40888 1.32702 1.21774 0.97606 0.95109 0.85065 1.19486 0.89551 0.97220 0.97698 1.21847 1.02601 1.24380 1.15462 0.92782 1.25905 0.93515 0.97168 1.02105 1.70800 1.38860 1.22447 1.22241 0.83493 0.76278 0.75396 0.74858 1.20698 1.21291 1.21300 1.22644 1.02504 1.01020 0.94621 1.22538 0.80590 0.99872 0.98115 1.87948 1.21155 1.77912 1.42862 0.91628 0.91595 0.90896 0.89847 0.90029 0.75066 0.75500 0.91672 0.91665 0.96569 0.96567 0.92066 0.90461 0.89932 0.92752 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.56 37.16 0.36 -0.46 16 2 C 0.09 0.64 3.26 -26.69 -0.09 0.55 16 3 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.16 -1.13 4.89 -26.59 -0.13 -1.26 16 5 C 0.14 1.32 2.54 -67.75 -0.17 1.15 16 6 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 7 N -0.70 -7.80 5.08 -54.05 -0.27 -8.07 16 8 C 0.51 7.41 7.86 -11.58 -0.09 7.32 16 9 O -0.52 -8.46 16.14 5.50 0.09 -8.37 16 10 C 0.50 8.44 7.89 -11.58 -0.09 8.35 16 11 O -0.53 -9.95 16.48 5.49 0.09 -9.86 16 12 N -0.69 -12.41 5.55 -60.73 -0.34 -12.75 16 13 C 0.13 2.65 5.61 -4.04 -0.02 2.62 16 14 C 0.00 -0.05 4.40 -27.88 -0.12 -0.18 16 15 C -0.60 -16.82 9.11 -34.44 -0.31 -17.14 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.27 13.65 55.43 0.76 -26.51 16 19 Si 1.07 24.86 29.90 -169.99 -5.08 19.77 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.17 -1.50 5.72 -26.60 -0.15 -1.65 16 24 C 0.07 0.51 6.84 37.20 0.25 0.76 16 25 O -0.38 -3.35 10.41 -35.23 -0.37 -3.72 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.41 4.17 8.08 -40.82 -0.33 3.84 16 32 H 0.41 6.98 7.94 -40.82 -0.32 6.66 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 37 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -32.15 343.96 -7.06 -39.21 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.45 Total: 4.64 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.67 Total: 0.48 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.15 Total: -47.34 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.19 Total: -21.95 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.15 -7.06 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.041 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds