Wall clock time and date at job start Tue Mar 31 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.48911 * 2 1 4 4 C 1.53089 * 109.48392 * 239.96764 * 2 1 3 5 5 C 1.53188 * 109.16251 * 182.40788 * 4 2 1 6 6 H 1.09006 * 109.53939 * 297.02719 * 5 4 2 7 7 N 1.46496 * 109.54001 * 176.84906 * 5 4 2 8 8 C 1.34777 * 119.99610 * 155.00175 * 7 5 4 9 9 O 1.21346 * 119.99972 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99994 * 179.97438 * 8 7 5 11 11 O 1.21355 * 119.99792 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99994 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99610 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46847 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.53175 * 109.03418 * 56.97948 * 5 4 2 24 24 C 1.53086 * 109.16768 * 303.01922 * 23 5 4 25 25 O 1.42900 * 109.41590 * 57.60974 * 24 23 5 26 26 H 1.09004 * 109.46538 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47636 * 300.02907 * 1 2 3 28 28 H 1.08998 * 109.47377 * 60.03631 * 1 2 3 29 29 H 1.09002 * 109.52240 * 62.50189 * 4 2 1 30 30 H 1.08995 * 109.52204 * 302.30838 * 4 2 1 31 31 H 0.96996 * 120.00503 * 334.99810 * 7 5 4 32 32 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 33 33 H 1.09000 * 109.47627 * 59.99917 * 13 12 10 34 34 H 1.09002 * 109.46983 * 299.99313 * 13 12 10 35 35 H 1.09001 * 109.47671 * 59.99931 * 14 13 12 36 36 H 1.09006 * 109.47297 * 299.99651 * 14 13 12 37 37 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 38 38 H 1.08996 * 109.52328 * 62.92682 * 23 5 4 39 39 H 1.09002 * 109.52022 * 183.11168 * 23 5 4 40 40 H 1.09001 * 109.48214 * 297.62836 * 24 23 5 41 41 H 1.08995 * 109.49715 * 177.59994 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5712 -0.7709 -1.2120 6 1 3.9690 0.2436 -1.2422 7 7 4.0659 -1.5259 -2.3658 8 6 5.3080 -1.2991 -2.8372 9 8 6.0163 -0.4691 -2.3063 10 6 5.8130 -2.0698 -4.0140 11 8 5.1048 -2.9002 -4.5446 12 7 7.0549 -1.8425 -4.4858 13 6 7.5495 -2.5976 -5.6395 14 6 8.9751 -2.1500 -5.9688 15 6 9.4843 -2.9271 -7.1553 16 1 8.8543 -3.6667 -7.6271 17 6 10.7543 -2.6940 -7.6385 18 7 11.5217 -1.7938 -7.0637 19 14 11.3857 -3.6579 -9.1088 20 1 12.7688 -3.2224 -9.4292 21 1 11.3846 -5.1077 -8.7878 22 1 10.5055 -3.4091 -10.2787 23 6 4.0177 -1.4599 0.0811 24 6 3.4307 -0.7092 1.2792 25 8 2.0066 -0.6741 1.1665 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5142 0.8897 28 1 -0.3634 0.5133 -0.8903 29 1 1.7149 -0.1844 -2.1398 30 1 1.6445 -1.7375 -1.2707 31 1 3.4997 -2.1892 -2.7904 32 1 7.6207 -1.1785 -4.0618 33 1 6.9039 -2.4136 -6.4982 34 1 7.5477 -3.6621 -5.4050 35 1 9.6211 -2.3336 -5.1103 36 1 8.9766 -1.0855 -6.2035 37 1 11.1939 -1.2935 -6.3000 38 1 3.6614 -2.4900 0.0867 39 1 5.1059 -1.4496 0.1424 40 1 3.8192 0.3091 1.2960 41 1 3.7099 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323226910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:07 Heat of formation + Delta-G solvation = -166.151830 kcal Electronic energy + Delta-G solvation = -22034.084171 eV Core-core repulsion = 18526.067504 eV Total energy + Delta-G solvation = -3508.016667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94246 -40.61957 -39.51138 -37.18731 -36.44195 -35.07750 -33.78253 -32.72188 -31.51463 -28.78053 -27.23860 -25.72822 -24.57293 -23.44957 -22.77983 -21.72419 -21.37428 -19.78216 -18.81751 -18.07171 -17.38366 -17.16057 -17.13795 -16.74635 -16.31870 -16.00216 -15.67158 -15.60438 -15.23629 -15.04363 -14.72648 -14.40442 -14.24941 -13.72924 -13.53660 -13.19801 -12.97787 -12.91609 -12.89015 -12.51562 -12.32901 -12.15139 -12.14224 -12.04760 -11.88713 -11.48709 -11.05989 -10.78495 -10.60569 -10.52596 -10.41929 -10.32040 -8.73008 -6.44947 0.21407 1.19125 1.55220 1.62708 1.82294 2.01308 2.47822 2.60162 2.79574 3.12676 3.30713 3.51843 3.66977 3.83858 3.97273 4.15991 4.18522 4.24237 4.26815 4.39270 4.46262 4.61331 4.64441 4.69804 4.79447 4.89128 4.91070 4.97829 4.98913 5.09994 5.18260 5.21712 5.26881 5.32083 5.81245 5.88684 6.12217 6.22951 6.25013 6.50295 6.61987 6.81733 7.36110 8.68938 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050295 B = 0.002478 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.586462 B =11298.668829 C =11576.277057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.067 0.933 4 C -0.151 4.151 5 C 0.139 3.861 6 H 0.085 0.915 7 N -0.682 5.682 8 C 0.517 3.483 9 O -0.539 6.539 10 C 0.500 3.500 11 O -0.547 6.547 12 N -0.690 5.690 13 C 0.145 3.855 14 C 0.002 3.998 15 C -0.621 4.621 16 H 0.056 0.944 17 C -0.035 4.035 18 N -0.934 5.934 19 Si 1.119 2.881 20 H -0.284 1.284 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.165 4.165 24 C 0.068 3.932 25 O -0.393 6.393 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.420 0.580 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.051 3.390 15.649 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.085 0.915 4 C -0.189 4.189 5 C 0.035 3.965 6 H 0.103 0.897 7 N -0.335 5.335 8 C 0.297 3.703 9 O -0.416 6.416 10 C 0.281 3.719 11 O -0.425 6.425 12 N -0.341 5.341 13 C 0.022 3.978 14 C -0.035 4.035 15 C -0.659 4.659 16 H 0.075 0.925 17 C -0.233 4.233 18 N -0.570 5.570 19 Si 0.940 3.060 20 H -0.209 1.209 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.204 4.204 24 C -0.010 4.010 25 O -0.313 6.313 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.258 0.742 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.888 3.115 14.792 25.784 hybrid contribution -0.671 0.389 0.839 1.142 sum -21.558 3.504 15.631 26.858 Atomic orbital electron populations 1.21777 0.91398 1.03299 1.03490 1.22203 0.96347 0.95108 0.83572 0.91516 1.22541 0.92123 1.03813 1.00449 1.21280 0.95301 0.95915 0.83991 0.89655 1.45816 1.14047 1.41548 1.32044 1.19933 0.83397 0.82994 0.83929 1.90754 1.56820 1.34414 1.59641 1.20381 0.82724 0.83780 0.85045 1.90727 1.56772 1.34958 1.60089 1.46050 1.14877 1.40987 1.32213 1.21313 0.95377 0.95006 0.86095 1.19347 0.91546 0.96202 0.96403 1.22286 1.02898 1.24497 1.16268 0.92528 1.27432 0.94158 0.97314 1.04363 1.70924 1.39523 1.23841 1.22756 0.82902 0.75838 0.74991 0.72267 1.20939 1.19353 1.19336 1.22596 1.01653 1.01236 0.94924 1.22579 0.80260 1.00134 0.97985 1.87942 1.21485 1.78207 1.43659 0.91842 0.91539 0.89370 0.88665 0.89534 0.74223 0.74929 0.91990 0.92034 0.97720 0.97684 0.93280 0.90377 0.91323 0.92275 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.56 71.98 0.69 -0.61 16 2 C 0.09 1.04 3.26 30.62 0.10 1.14 16 3 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.15 -1.83 4.89 30.69 0.15 -1.68 16 5 C 0.14 2.37 2.54 45.11 0.11 2.48 16 6 H 0.09 1.65 7.58 -2.38 -0.02 1.63 16 7 N -0.68 -14.21 5.08 -443.29 -2.25 -16.46 16 8 C 0.52 14.58 7.86 87.27 0.69 15.26 16 9 O -0.54 -17.23 16.14 -3.23 -0.05 -17.28 16 10 C 0.50 16.63 7.89 87.27 0.69 17.32 16 11 O -0.55 -19.94 16.48 -3.26 -0.05 -20.00 16 12 N -0.69 -24.79 5.55 -464.41 -2.58 -27.37 16 13 C 0.14 6.08 5.61 86.38 0.48 6.56 16 14 C 0.00 0.12 4.40 29.85 0.13 0.26 16 15 C -0.62 -34.64 9.11 25.60 0.23 -34.40 16 16 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 17 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 18 N -0.93 -56.71 13.65 21.45 0.29 -56.42 16 19 Si 1.12 49.26 29.90 68.60 2.05 51.31 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C -0.17 -2.74 5.72 30.68 0.18 -2.56 16 24 C 0.07 0.95 6.84 72.01 0.49 1.44 16 25 O -0.39 -6.28 10.41 -148.98 -1.55 -7.83 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.42 7.73 8.08 -92.71 -0.75 6.98 16 32 H 0.41 14.20 7.94 -92.71 -0.74 13.46 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.00 0.24 8.01 -2.39 -0.02 0.22 16 36 H 0.00 0.25 8.01 -2.38 -0.02 0.24 16 37 H 0.26 15.71 7.22 -92.71 -0.67 15.04 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -67.81 343.96 -0.08 -67.88 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.35 Total: 22.45 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.41 Total: 3.72 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.53 Total: -100.25 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.66 Total: -45.11 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Total: -67.81 -0.08 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.268 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds