Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.49285 * 2 1 4 4 C 1.53096 * 109.47886 * 120.02905 * 2 1 3 5 5 C 1.53175 * 109.16045 * 177.59383 * 4 2 1 6 6 H 1.08999 * 109.54079 * 183.06278 * 5 4 2 7 7 N 1.46500 * 109.54801 * 62.88693 * 5 4 2 8 8 C 1.34777 * 120.00376 * 154.99882 * 7 5 4 9 9 O 1.21352 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.49441 * 120.00194 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00052 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00194 * 179.97438 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.53176 * 109.03752 * 303.01399 * 5 4 2 24 24 C 1.53100 * 109.15894 * 56.98348 * 23 5 4 25 25 O 1.42890 * 109.41528 * 302.39056 * 24 23 5 26 26 H 1.09005 * 109.47598 * 299.97207 * 1 2 3 27 27 H 1.09001 * 109.47271 * 59.96987 * 1 2 3 28 28 H 1.08999 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.52521 * 57.68615 * 4 2 1 30 30 H 1.09006 * 109.56840 * 297.52568 * 4 2 1 31 31 H 0.97003 * 119.99983 * 334.99656 * 7 5 4 32 32 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 33 33 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 34 34 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 35 35 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 36 36 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 37 37 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.52414 * 176.88547 * 23 5 4 39 39 H 1.08997 * 109.52411 * 297.08393 * 23 5 4 40 40 H 1.09003 * 109.47409 * 182.40566 * 24 23 5 41 41 H 1.09003 * 109.48787 * 62.38414 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7708 1.2122 6 1 3.9391 -1.3313 2.0716 7 7 4.1058 0.5925 1.2507 8 6 5.3477 0.8162 1.7240 9 8 6.0232 -0.1119 2.1178 10 6 5.8934 2.2069 1.7628 11 8 5.2181 3.1349 1.3686 12 7 7.1352 2.4306 2.2365 13 6 7.6699 3.7940 2.2750 14 6 9.0870 3.7700 2.8514 15 6 9.6373 5.1724 2.8905 16 1 9.0362 5.9983 2.5397 17 6 10.9077 5.4012 3.3750 18 7 11.6393 4.3956 3.8026 19 14 11.5894 7.1396 3.4240 20 1 10.7211 7.9880 4.2794 21 1 12.9649 7.1163 3.9834 22 1 11.6246 7.6966 2.0479 23 6 4.0176 -1.4601 -0.0808 24 6 3.4306 -0.7093 -1.2790 25 8 2.0066 -0.6742 -1.1664 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6443 -1.7374 1.2710 30 1 1.7147 -0.1852 2.1405 31 1 3.5660 1.3343 0.9356 32 1 7.6749 1.6889 2.5520 33 1 7.0325 4.4167 2.9027 34 1 7.6957 4.2028 1.2650 35 1 9.7242 3.1474 2.2234 36 1 9.0614 3.3610 3.8615 37 1 12.5332 4.5565 4.1431 38 1 5.1058 -1.4498 -0.1420 39 1 3.6612 -2.4902 -0.0863 40 1 3.7100 -1.2204 -2.2004 41 1 3.8192 0.3090 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323226913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -136.189501 kcal Electronic energy + Delta-G solvation = -22361.308981 eV Core-core repulsion = 18854.591578 eV Total energy + Delta-G solvation = -3506.717403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91257 -39.64356 -38.16544 -35.66480 -34.91296 -33.17595 -32.89087 -31.73731 -29.83551 -28.14731 -25.86483 -24.62293 -23.67841 -22.57494 -21.18106 -20.55911 -19.72918 -18.41232 -16.85669 -16.67073 -16.40476 -16.26341 -15.84615 -15.71610 -15.01990 -14.85884 -14.54947 -14.34823 -13.92525 -13.58177 -13.28701 -12.99361 -12.86347 -12.71644 -12.46987 -12.33213 -12.24023 -11.55559 -11.49961 -11.34876 -11.26233 -11.06446 -10.70260 -10.69297 -10.41379 -9.84562 -9.82614 -9.48272 -9.38616 -9.23050 -8.72936 -8.43565 -6.11800 -4.15713 1.55772 2.46809 3.29354 3.33654 3.36249 3.37392 3.41440 3.81594 4.23499 4.34671 4.38744 4.46208 4.63091 4.70947 4.74861 4.92652 5.10588 5.18195 5.25019 5.27087 5.32717 5.45017 5.51548 5.62529 5.69045 5.73822 5.80182 6.11167 6.15251 6.20902 6.56002 6.66184 6.89120 6.98419 7.43557 7.55439 7.61864 7.85092 7.87856 8.18317 8.30546 8.89664 9.49259 10.99666 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039335 B = 0.002726 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.662810 B =10267.823299 C =10543.802767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.158 4.158 5 C 0.141 3.859 6 H 0.098 0.902 7 N -0.704 5.704 8 C 0.510 3.490 9 O -0.518 6.518 10 C 0.496 3.504 11 O -0.534 6.534 12 N -0.685 5.685 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.167 4.167 24 C 0.060 3.940 25 O -0.378 6.378 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 -12.271 -6.912 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 H 0.077 0.923 4 C -0.196 4.196 5 C 0.036 3.964 6 H 0.116 0.884 7 N -0.359 5.359 8 C 0.291 3.709 9 O -0.393 6.393 10 C 0.275 3.725 11 O -0.412 6.412 12 N -0.336 5.336 13 C -0.003 4.003 14 C -0.026 4.026 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.206 4.206 24 C -0.016 4.016 25 O -0.297 6.297 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.247 0.753 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.104 -12.389 -6.948 24.616 hybrid contribution 0.768 0.981 0.303 1.282 sum -19.336 -11.408 -6.645 23.413 Atomic orbital electron populations 1.21762 0.92660 1.03027 1.02727 1.22105 0.95466 0.95038 0.84990 0.92328 1.22538 0.94164 1.03438 0.99437 1.21088 0.93263 0.82731 0.99274 0.88383 1.45926 1.15892 1.10193 1.63865 1.20490 0.82359 0.90043 0.78039 1.90757 1.57983 1.44748 1.45773 1.19981 0.83548 0.88594 0.80336 1.90731 1.58587 1.44339 1.47548 1.46242 1.14326 1.12829 1.60186 1.21944 0.97789 0.79137 1.01442 1.19350 0.88188 0.98413 0.96652 1.20974 0.99988 0.92538 1.42834 0.92212 1.25001 0.96878 0.97354 0.95015 1.69948 1.10429 1.30774 1.41931 0.86551 0.78000 0.84346 0.78500 1.20088 1.21212 1.20090 1.22585 1.02490 1.00508 0.95018 1.22570 0.80680 1.00071 0.98311 1.87940 1.21123 1.77863 1.42814 0.90907 0.91641 0.91700 0.89106 0.89819 0.75309 0.75375 0.91844 0.91850 0.95669 0.95670 0.92689 0.89923 0.89765 0.88561 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.56 37.16 0.36 -0.54 16 2 C 0.08 0.64 3.09 -26.68 -0.08 0.55 16 3 H 0.06 0.47 6.71 -51.93 -0.35 0.12 16 4 C -0.16 -1.11 5.07 -26.59 -0.13 -1.25 16 5 C 0.14 1.29 2.82 -67.75 -0.19 1.10 16 6 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 7 N -0.70 -7.81 4.39 -54.06 -0.24 -8.05 16 8 C 0.51 7.36 7.86 -11.59 -0.09 7.27 16 9 O -0.52 -8.39 16.14 5.49 0.09 -8.30 16 10 C 0.50 8.37 7.89 -11.59 -0.09 8.28 16 11 O -0.53 -9.91 16.48 5.49 0.09 -9.82 16 12 N -0.69 -12.30 5.55 -60.73 -0.34 -12.64 16 13 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 14 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.17 -1.47 5.81 -26.59 -0.15 -1.62 16 24 C 0.06 0.53 6.68 37.21 0.25 0.78 16 25 O -0.38 -3.61 10.41 -35.23 -0.37 -3.97 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 4.27 6.54 -40.82 -0.27 4.00 16 32 H 0.41 7.03 7.94 -40.82 -0.32 6.71 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -31.07 341.43 -6.97 -38.03 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.35 Total: 4.72 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.72 Total: 4.03 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.16 Total: -45.99 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.19 Total: -22.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.07 -6.97 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.155 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds