Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.49285 * 2 1 4 4 C 1.53096 * 109.47886 * 120.02905 * 2 1 3 5 5 C 1.53175 * 109.16045 * 177.59383 * 4 2 1 6 6 H 1.08999 * 109.54079 * 183.06278 * 5 4 2 7 7 N 1.46500 * 109.54801 * 62.88693 * 5 4 2 8 8 C 1.34777 * 120.00376 * 154.99882 * 7 5 4 9 9 O 1.21352 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.49441 * 120.00194 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00052 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00194 * 179.97438 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.53176 * 109.03752 * 303.01399 * 5 4 2 24 24 C 1.53100 * 109.15894 * 56.98348 * 23 5 4 25 25 O 1.42890 * 109.41528 * 302.39056 * 24 23 5 26 26 H 1.09005 * 109.47598 * 299.97207 * 1 2 3 27 27 H 1.09001 * 109.47271 * 59.96987 * 1 2 3 28 28 H 1.08999 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.52521 * 57.68615 * 4 2 1 30 30 H 1.09006 * 109.56840 * 297.52568 * 4 2 1 31 31 H 0.97003 * 119.99983 * 334.99656 * 7 5 4 32 32 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 33 33 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 34 34 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 35 35 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 36 36 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 37 37 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.52414 * 176.88547 * 23 5 4 39 39 H 1.08997 * 109.52411 * 297.08393 * 23 5 4 40 40 H 1.09003 * 109.47409 * 182.40566 * 24 23 5 41 41 H 1.09003 * 109.48787 * 62.38414 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5710 -0.7708 1.2122 6 1 3.9391 -1.3313 2.0716 7 7 4.1058 0.5925 1.2507 8 6 5.3477 0.8162 1.7240 9 8 6.0232 -0.1119 2.1178 10 6 5.8934 2.2069 1.7628 11 8 5.2181 3.1349 1.3686 12 7 7.1352 2.4306 2.2365 13 6 7.6699 3.7940 2.2750 14 6 9.0870 3.7700 2.8514 15 6 9.6373 5.1724 2.8905 16 1 9.0362 5.9983 2.5397 17 6 10.9077 5.4012 3.3750 18 7 11.6393 4.3956 3.8026 19 14 11.5894 7.1396 3.4240 20 1 10.7211 7.9880 4.2794 21 1 12.9649 7.1163 3.9834 22 1 11.6246 7.6966 2.0479 23 6 4.0176 -1.4601 -0.0808 24 6 3.4306 -0.7093 -1.2790 25 8 2.0066 -0.6742 -1.1664 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6443 -1.7374 1.2710 30 1 1.7147 -0.1852 2.1405 31 1 3.5660 1.3343 0.9356 32 1 7.6749 1.6889 2.5520 33 1 7.0325 4.4167 2.9027 34 1 7.6957 4.2028 1.2650 35 1 9.7242 3.1474 2.2234 36 1 9.0614 3.3610 3.8615 37 1 12.5332 4.5565 4.1431 38 1 5.1058 -1.4498 -0.1420 39 1 3.6612 -2.4902 -0.0863 40 1 3.7100 -1.2204 -2.2004 41 1 3.8192 0.3090 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323226913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = -158.776552 kcal Electronic energy + Delta-G solvation = -22362.288429 eV Core-core repulsion = 18854.591578 eV Total energy + Delta-G solvation = -3507.696851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98569 -40.65402 -39.38173 -36.97146 -36.20036 -34.84430 -33.76774 -32.63514 -31.70142 -28.78644 -27.47605 -25.70914 -24.89303 -23.25756 -22.90725 -21.79594 -20.60087 -19.71259 -18.58983 -17.81928 -17.32394 -17.22420 -16.93801 -16.79255 -16.51204 -16.26112 -15.96794 -15.40821 -15.08561 -14.81382 -14.45599 -14.31335 -13.92488 -13.63087 -13.37043 -13.27764 -13.01554 -12.93729 -12.86349 -12.78664 -12.55292 -12.28388 -12.12019 -12.04020 -11.69757 -11.46815 -11.35154 -10.72999 -10.62160 -10.60616 -10.28357 -10.20873 -8.24267 -6.35691 0.28025 1.27105 1.43165 1.45099 1.53284 2.08048 2.38955 2.62892 2.79756 3.10727 3.37808 3.59015 3.69261 3.82001 3.93897 4.14219 4.26037 4.37072 4.43477 4.47610 4.60366 4.67063 4.72931 4.79535 4.81301 4.88352 4.99643 5.03358 5.05460 5.11391 5.24725 5.32672 5.40933 5.53543 5.74065 5.88000 6.11775 6.24556 6.30952 6.66036 6.78181 6.89113 7.33977 8.87612 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039335 B = 0.002726 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.662810 B =10267.823299 C =10543.802767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.054 0.946 4 C -0.149 4.149 5 C 0.136 3.864 6 H 0.094 0.906 7 N -0.685 5.685 8 C 0.517 3.483 9 O -0.537 6.537 10 C 0.498 3.502 11 O -0.549 6.549 12 N -0.688 5.688 13 C 0.138 3.862 14 C 0.019 3.981 15 C -0.546 4.546 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.267 1.267 23 C -0.163 4.163 24 C 0.061 3.939 25 O -0.390 6.390 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.646 -12.142 -7.173 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.072 0.928 4 C -0.186 4.186 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.339 5.339 8 C 0.298 3.702 9 O -0.414 6.414 10 C 0.279 3.721 11 O -0.428 6.428 12 N -0.339 5.339 13 C 0.015 3.985 14 C -0.018 4.018 15 C -0.585 4.585 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.201 4.201 24 C -0.016 4.016 25 O -0.310 6.310 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.253 0.747 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.606 -12.273 -7.227 25.878 hybrid contribution 1.148 0.892 0.353 1.496 sum -20.458 -11.381 -6.873 24.398 Atomic orbital electron populations 1.21772 0.91378 1.03470 1.03306 1.22276 0.96517 0.94745 0.84733 0.92778 1.22515 0.92103 1.04467 0.99561 1.21315 0.94795 0.81237 0.99380 0.88835 1.45923 1.14501 1.11492 1.62027 1.19950 0.83260 0.88400 0.78617 1.90760 1.58736 1.44683 1.47204 1.20372 0.82784 0.89694 0.79248 1.90719 1.58842 1.45251 1.47997 1.46074 1.15081 1.11837 1.60883 1.21482 0.95540 0.80644 1.00826 1.19168 0.90187 0.97012 0.95474 1.21428 1.00513 0.93820 1.42712 0.91679 1.25920 0.97267 1.01657 0.94524 1.70069 1.10846 1.33057 1.42822 0.85460 0.77292 0.79159 0.78908 1.19147 1.20854 1.19181 1.22546 1.01559 1.01348 0.94696 1.22585 0.80584 0.99605 0.98841 1.87936 1.21217 1.78078 1.43726 0.89399 0.92049 0.91310 0.87640 0.88664 0.74700 0.74914 0.91977 0.92032 0.97439 0.97414 0.92541 0.91377 0.88225 0.87496 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.56 71.98 0.69 -0.77 16 2 C 0.07 1.02 3.09 30.62 0.09 1.11 16 3 H 0.05 0.78 6.71 -2.38 -0.02 0.76 16 4 C -0.15 -1.74 5.07 30.69 0.16 -1.58 16 5 C 0.14 2.27 2.82 45.11 0.13 2.40 16 6 H 0.09 1.72 7.58 -2.39 -0.02 1.70 16 7 N -0.69 -14.39 4.39 -443.32 -1.95 -16.34 16 8 C 0.52 14.59 7.86 87.27 0.69 15.27 16 9 O -0.54 -17.16 16.14 -3.25 -0.05 -17.21 16 10 C 0.50 16.60 7.89 87.27 0.69 17.29 16 11 O -0.55 -20.00 16.48 -3.25 -0.05 -20.05 16 12 N -0.69 -24.78 5.55 -464.42 -2.58 -27.36 16 13 C 0.14 5.73 5.61 86.38 0.48 6.22 16 14 C 0.02 0.96 5.09 29.85 0.15 1.11 16 15 C -0.55 -30.06 9.11 25.60 0.23 -29.83 16 16 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 17 C 0.01 0.28 5.46 84.66 0.46 0.75 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 19 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C -0.16 -2.63 5.81 30.69 0.18 -2.45 16 24 C 0.06 0.99 6.68 72.02 0.48 1.47 16 25 O -0.39 -6.80 10.41 -148.98 -1.55 -8.35 16 26 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.41 8.09 6.54 -92.71 -0.61 7.48 16 32 H 0.41 14.40 7.94 -92.71 -0.74 13.66 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 Total: -1.00 -65.51 341.43 0.26 -65.25 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.30 Total: 22.36 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.43 Total: 10.99 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -4.24 Total: -98.20 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.66 Total: -45.61 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.51 0.26 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.525 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds