Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47943 * 2 1 4 4 C 1.53088 * 109.49334 * 239.97319 * 2 1 3 5 5 C 1.53183 * 109.16412 * 182.39997 * 4 2 1 6 6 H 1.09002 * 109.61356 * 176.88430 * 5 4 2 7 7 N 1.46499 * 109.54510 * 297.11194 * 5 4 2 8 8 C 1.34774 * 119.99966 * 204.55529 * 7 5 4 9 9 O 1.21351 * 120.00197 * 0.02562 * 8 7 5 10 10 C 1.49454 * 119.99870 * 179.97438 * 8 7 5 11 11 O 1.21351 * 119.99934 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99870 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99966 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47267 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.53174 * 109.03600 * 56.98231 * 5 4 2 24 24 C 1.53102 * 109.16125 * 303.01751 * 23 5 4 25 25 O 1.42897 * 109.48156 * 120.02014 * 2 1 3 26 26 H 1.08991 * 109.47259 * 299.97628 * 1 2 3 27 27 H 1.08999 * 109.47288 * 59.97843 * 1 2 3 28 28 H 1.09006 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.52538 * 62.49200 * 4 2 1 30 30 H 1.09004 * 109.52178 * 302.30763 * 4 2 1 31 31 H 0.97004 * 119.99469 * 24.55370 * 7 5 4 32 32 H 0.96999 * 120.00050 * 0.02562 * 12 10 8 33 33 H 1.09004 * 109.47024 * 59.99687 * 13 12 10 34 34 H 1.09005 * 109.47136 * 300.00071 * 13 12 10 35 35 H 1.09004 * 109.47330 * 59.99904 * 14 13 12 36 36 H 1.08997 * 109.47279 * 300.00390 * 14 13 12 37 37 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.52851 * 62.92155 * 23 5 4 39 39 H 1.08995 * 109.52235 * 183.11645 * 23 5 4 40 40 H 1.08999 * 109.47978 * 177.59571 * 24 23 5 41 41 H 1.09003 * 109.47720 * 297.62848 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7222 -1.2495 5 6 3.5714 -0.7704 -1.2119 6 1 3.9410 -1.3314 -2.0703 7 7 4.1059 0.5931 -1.2504 8 6 5.3512 0.8158 -1.7151 9 8 6.0296 -0.1129 -2.1021 10 6 5.8962 2.2069 -1.7550 11 8 5.2176 3.1357 -1.3684 12 7 7.1417 2.4296 -2.2192 13 6 7.6761 3.7931 -2.2577 14 6 9.0978 3.7679 -2.8224 15 6 9.6473 5.1705 -2.8626 16 1 9.0428 5.9974 -2.5201 17 6 10.9215 5.3984 -3.3377 18 7 11.4013 6.6225 -3.3723 19 14 11.9694 3.9676 -3.9243 20 1 11.7365 3.7452 -5.3740 21 1 13.4034 4.2777 -3.6952 22 1 11.6012 2.7425 -3.1701 23 6 4.0180 -1.4595 0.0812 24 6 3.4307 -0.7088 1.2793 25 8 2.0065 -0.6740 1.1664 26 1 -0.3633 0.5134 0.8901 27 1 -0.3634 0.5142 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7151 -0.1844 -2.1398 30 1 1.6448 -1.7375 -1.2709 31 1 3.5634 1.3355 -0.9414 32 1 7.6842 1.6872 -2.5279 33 1 7.6935 4.2052 -1.2487 34 1 7.0435 4.4135 -2.8927 35 1 9.0808 3.3557 -3.8313 36 1 9.7301 3.1476 -2.1872 37 1 12.2975 6.7828 -3.7069 38 1 3.6619 -2.4897 0.0867 39 1 5.1061 -1.4489 0.1425 40 1 3.7100 -1.2197 2.2008 41 1 3.8191 0.3096 1.2960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323226914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = -132.049675 kcal Electronic energy + Delta-G solvation = -22421.628836 eV Core-core repulsion = 18915.090949 eV Total energy + Delta-G solvation = -3506.537886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97750 -39.70884 -38.24699 -35.74693 -35.02615 -33.20656 -32.84948 -31.79423 -30.31401 -28.18766 -26.09663 -24.67503 -23.65540 -22.59733 -20.97318 -20.66687 -19.78167 -18.44927 -17.08773 -16.70409 -16.66200 -16.35603 -15.93399 -15.81065 -15.10379 -14.93008 -14.45931 -14.20575 -14.02305 -13.73831 -13.37979 -13.04861 -12.97560 -12.76510 -12.63735 -12.50043 -12.27591 -11.64083 -11.55808 -11.51516 -11.38956 -11.27396 -10.72925 -10.47027 -10.33539 -9.98211 -9.88716 -9.51276 -9.43841 -9.33846 -8.81606 -8.63597 -6.14448 -4.15324 1.47678 2.38944 3.24835 3.29172 3.32962 3.34587 3.38267 3.72867 4.19284 4.30811 4.35774 4.42224 4.57947 4.61261 4.71176 4.88978 5.06977 5.14882 5.18602 5.24242 5.29571 5.40721 5.47255 5.58896 5.65284 5.69807 5.77734 5.93358 6.05253 6.06977 6.43481 6.47054 6.85818 6.87776 7.05274 7.15555 7.50007 7.60071 7.79060 8.15899 8.39489 8.88737 9.45419 10.98298 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037167 B = 0.002903 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.177682 B = 9643.055609 C = 9968.217831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.158 4.158 5 C 0.141 3.859 6 H 0.098 0.902 7 N -0.703 5.703 8 C 0.510 3.490 9 O -0.519 6.519 10 C 0.497 3.503 11 O -0.529 6.529 12 N -0.690 5.690 13 C 0.127 3.873 14 C -0.023 4.023 15 C -0.525 4.525 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.167 4.167 24 C 0.060 3.940 25 O -0.378 6.378 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.410 0.590 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.940 -17.551 6.047 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 H 0.077 0.923 4 C -0.196 4.196 5 C 0.037 3.963 6 H 0.116 0.884 7 N -0.358 5.358 8 C 0.291 3.709 9 O -0.394 6.394 10 C 0.277 3.723 11 O -0.407 6.407 12 N -0.341 5.341 13 C 0.005 3.995 14 C -0.061 4.061 15 C -0.563 4.563 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.206 4.206 24 C -0.016 4.016 25 O -0.297 6.297 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.872 -17.505 6.123 27.181 hybrid contribution 0.970 -0.517 -0.592 1.249 sum -18.902 -18.022 5.532 26.696 Atomic orbital electron populations 1.21763 0.92623 1.03039 1.02764 1.22106 0.95504 0.95035 0.84963 0.92319 1.22540 0.94088 1.03475 0.99480 1.21097 0.93321 0.82652 0.99274 0.88406 1.45930 1.15511 1.10231 1.64107 1.20462 0.82423 0.89981 0.78027 1.90751 1.57999 1.44706 1.45953 1.19969 0.83469 0.88665 0.80218 1.90749 1.58430 1.44258 1.47222 1.46213 1.14162 1.12629 1.61086 1.21724 0.96580 0.79201 1.01957 1.19822 0.90861 0.99282 0.96162 1.20873 1.00334 0.91469 1.43626 0.90534 1.24990 0.97584 0.95643 0.94964 1.69899 1.17384 1.19836 1.46399 0.86764 0.79681 0.83207 0.79543 1.20148 1.21210 1.18956 1.22588 1.02461 1.00537 0.95027 1.22573 0.80707 1.00063 0.98298 1.87946 1.21095 1.77863 1.42807 0.91607 0.90889 0.91696 0.89796 0.89070 0.75244 0.75562 0.91220 0.91235 0.96157 0.95719 0.92478 0.89745 0.89950 0.88545 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.57 37.16 0.36 -0.51 16 2 C 0.08 0.61 3.09 -26.69 -0.08 0.53 16 3 H 0.06 0.45 6.72 -51.93 -0.35 0.10 16 4 C -0.16 -1.06 5.07 -26.59 -0.13 -1.19 16 5 C 0.14 1.23 2.81 -67.75 -0.19 1.03 16 6 H 0.10 0.93 7.59 -51.93 -0.39 0.53 16 7 N -0.70 -7.43 4.39 -54.06 -0.24 -7.66 16 8 C 0.51 6.99 7.86 -11.58 -0.09 6.90 16 9 O -0.52 -7.97 16.15 5.50 0.09 -7.88 16 10 C 0.50 8.00 7.89 -11.58 -0.09 7.91 16 11 O -0.53 -9.52 16.48 5.50 0.09 -9.43 16 12 N -0.69 -11.62 5.55 -60.73 -0.34 -11.96 16 13 C 0.13 2.50 5.61 -4.05 -0.02 2.48 16 14 C -0.02 -0.53 4.16 -27.89 -0.12 -0.65 16 15 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 19 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 23 C -0.17 -1.40 5.80 -26.59 -0.15 -1.55 16 24 C 0.06 0.51 6.68 37.21 0.25 0.76 16 25 O -0.38 -3.50 10.41 -35.23 -0.37 -3.87 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.41 4.08 6.54 -40.82 -0.27 3.81 16 32 H 0.41 6.38 7.94 -40.82 -0.32 6.06 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.02 0.45 7.58 -51.93 -0.39 0.05 16 36 H 0.02 0.55 7.19 -51.93 -0.37 0.18 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.69 337.84 -6.59 -38.28 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.32 Total: 4.55 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.71 Total: 2.81 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.20 Total: -45.91 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.19 Total: -21.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.69 -6.59 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.770 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds