Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47943 * 2 1 4 4 C 1.53088 * 109.49334 * 239.97319 * 2 1 3 5 5 C 1.53183 * 109.16412 * 182.39997 * 4 2 1 6 6 H 1.09002 * 109.61356 * 176.88430 * 5 4 2 7 7 N 1.46499 * 109.54510 * 297.11194 * 5 4 2 8 8 C 1.34774 * 119.99966 * 204.55529 * 7 5 4 9 9 O 1.21351 * 120.00197 * 0.02562 * 8 7 5 10 10 C 1.49454 * 119.99870 * 179.97438 * 8 7 5 11 11 O 1.21351 * 119.99934 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99870 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99966 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47267 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.53174 * 109.03600 * 56.98231 * 5 4 2 24 24 C 1.53102 * 109.16125 * 303.01751 * 23 5 4 25 25 O 1.42897 * 109.48156 * 120.02014 * 2 1 3 26 26 H 1.08991 * 109.47259 * 299.97628 * 1 2 3 27 27 H 1.08999 * 109.47288 * 59.97843 * 1 2 3 28 28 H 1.09006 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.52538 * 62.49200 * 4 2 1 30 30 H 1.09004 * 109.52178 * 302.30763 * 4 2 1 31 31 H 0.97004 * 119.99469 * 24.55370 * 7 5 4 32 32 H 0.96999 * 120.00050 * 0.02562 * 12 10 8 33 33 H 1.09004 * 109.47024 * 59.99687 * 13 12 10 34 34 H 1.09005 * 109.47136 * 300.00071 * 13 12 10 35 35 H 1.09004 * 109.47330 * 59.99904 * 14 13 12 36 36 H 1.08997 * 109.47279 * 300.00390 * 14 13 12 37 37 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.52851 * 62.92155 * 23 5 4 39 39 H 1.08995 * 109.52235 * 183.11645 * 23 5 4 40 40 H 1.08999 * 109.47978 * 177.59571 * 24 23 5 41 41 H 1.09003 * 109.47720 * 297.62848 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7222 -1.2495 5 6 3.5714 -0.7704 -1.2119 6 1 3.9410 -1.3314 -2.0703 7 7 4.1059 0.5931 -1.2504 8 6 5.3512 0.8158 -1.7151 9 8 6.0296 -0.1129 -2.1021 10 6 5.8962 2.2069 -1.7550 11 8 5.2176 3.1357 -1.3684 12 7 7.1417 2.4296 -2.2192 13 6 7.6761 3.7931 -2.2577 14 6 9.0978 3.7679 -2.8224 15 6 9.6473 5.1705 -2.8626 16 1 9.0428 5.9974 -2.5201 17 6 10.9215 5.3984 -3.3377 18 7 11.4013 6.6225 -3.3723 19 14 11.9694 3.9676 -3.9243 20 1 11.7365 3.7452 -5.3740 21 1 13.4034 4.2777 -3.6952 22 1 11.6012 2.7425 -3.1701 23 6 4.0180 -1.4595 0.0812 24 6 3.4307 -0.7088 1.2793 25 8 2.0065 -0.6740 1.1664 26 1 -0.3633 0.5134 0.8901 27 1 -0.3634 0.5142 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7151 -0.1844 -2.1398 30 1 1.6448 -1.7375 -1.2709 31 1 3.5634 1.3355 -0.9414 32 1 7.6842 1.6872 -2.5279 33 1 7.6935 4.2052 -1.2487 34 1 7.0435 4.4135 -2.8927 35 1 9.0808 3.3557 -3.8313 36 1 9.7301 3.1476 -2.1872 37 1 12.2975 6.7828 -3.7069 38 1 3.6619 -2.4897 0.0867 39 1 5.1061 -1.4489 0.1425 40 1 3.7100 -1.2197 2.2008 41 1 3.8191 0.3096 1.2960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323226914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = -156.092640 kcal Electronic energy + Delta-G solvation = -22422.671417 eV Core-core repulsion = 18915.090949 eV Total energy + Delta-G solvation = -3507.580467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99094 -40.66409 -39.38620 -37.01531 -36.20649 -34.81940 -33.77004 -32.63489 -32.13870 -28.79878 -27.64409 -25.64293 -24.82590 -23.23093 -22.71255 -21.81710 -20.59813 -19.68870 -19.03099 -17.87496 -17.32816 -17.23514 -16.93962 -16.81046 -16.33742 -16.21413 -16.00606 -15.45143 -15.17002 -14.86910 -14.59531 -14.49099 -13.92969 -13.63321 -13.40496 -13.37132 -13.08172 -13.02330 -12.86878 -12.79870 -12.23976 -12.20807 -12.12192 -12.03849 -11.79140 -11.52405 -11.35417 -10.80044 -10.74688 -10.61059 -10.30148 -10.23003 -8.31213 -6.38153 0.27752 1.26160 1.39028 1.40768 1.51854 2.07710 2.35566 2.58846 2.79599 3.04050 3.36744 3.58826 3.69190 3.81982 3.93952 4.13862 4.24724 4.26135 4.37146 4.47371 4.60206 4.67039 4.70776 4.72900 4.80966 4.88011 4.96550 4.99521 5.03338 5.11145 5.23968 5.28468 5.32226 5.35682 5.57550 5.85932 6.19129 6.24495 6.30311 6.64795 6.71210 6.88876 7.26566 8.85100 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037167 B = 0.002903 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.177682 B = 9643.055609 C = 9968.217831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.054 0.946 4 C -0.149 4.149 5 C 0.137 3.863 6 H 0.095 0.905 7 N -0.687 5.687 8 C 0.519 3.481 9 O -0.535 6.535 10 C 0.498 3.502 11 O -0.550 6.550 12 N -0.687 5.687 13 C 0.142 3.858 14 C -0.017 4.017 15 C -0.537 4.537 16 H 0.036 0.964 17 C 0.008 3.992 18 N -0.948 5.948 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.163 4.163 24 C 0.060 3.940 25 O -0.391 6.391 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.415 0.585 32 H 0.418 0.582 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 -20.318 5.688 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.072 0.928 4 C -0.187 4.187 5 C 0.033 3.967 6 H 0.113 0.887 7 N -0.341 5.341 8 C 0.299 3.701 9 O -0.411 6.411 10 C 0.279 3.721 11 O -0.428 6.428 12 N -0.339 5.339 13 C 0.019 3.981 14 C -0.055 4.055 15 C -0.575 4.575 16 H 0.054 0.946 17 C -0.190 4.190 18 N -0.588 5.588 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.164 1.164 23 C -0.201 4.201 24 C -0.017 4.017 25 O -0.310 6.310 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.252 0.748 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.775 -20.301 5.780 29.617 hybrid contribution 1.121 0.419 -0.418 1.267 sum -19.654 -19.883 5.363 28.467 Atomic orbital electron populations 1.21774 0.91450 1.03464 1.03278 1.22271 0.96482 0.94745 0.84789 0.92835 1.22515 0.92219 1.04445 0.99497 1.21314 0.94711 0.81213 0.99413 0.88666 1.45944 1.14258 1.11463 1.62391 1.19908 0.83258 0.88349 0.78601 1.90753 1.58633 1.44527 1.47236 1.20395 0.82853 0.89694 0.79148 1.90741 1.58875 1.45324 1.47894 1.45980 1.14759 1.11559 1.61572 1.21282 0.95172 0.80747 1.00911 1.19688 0.92228 0.96255 0.97296 1.21204 1.00278 0.93031 1.42985 0.94595 1.26002 0.99165 0.98696 0.95142 1.70059 1.18109 1.22575 1.48035 0.85619 0.77264 0.79943 0.79576 1.19043 1.21184 1.16398 1.22546 1.01621 1.01315 0.94637 1.22596 0.80568 0.99608 0.98910 1.87939 1.21270 1.78074 1.43734 0.92114 0.89416 0.91295 0.88668 0.87632 0.74754 0.74536 0.92276 0.92214 0.94723 0.94616 0.92292 0.88243 0.91219 0.87537 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.57 71.98 0.69 -0.72 16 2 C 0.07 0.97 3.09 30.62 0.09 1.07 16 3 H 0.05 0.74 6.72 -2.39 -0.02 0.73 16 4 C -0.15 -1.61 5.07 30.68 0.16 -1.45 16 5 C 0.14 2.10 2.81 45.11 0.13 2.23 16 6 H 0.10 1.59 7.59 -2.39 -0.02 1.57 16 7 N -0.69 -13.43 4.39 -443.30 -1.95 -15.38 16 8 C 0.52 13.47 7.86 87.27 0.69 14.16 16 9 O -0.53 -15.50 16.15 -3.25 -0.05 -15.55 16 10 C 0.50 15.53 7.89 87.27 0.69 16.22 16 11 O -0.55 -19.48 16.48 -3.25 -0.05 -19.53 16 12 N -0.69 -22.30 5.55 -464.41 -2.58 -24.87 16 13 C 0.14 5.56 5.61 86.38 0.48 6.04 16 14 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 15 C -0.54 -30.07 9.66 25.60 0.25 -29.82 16 16 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 17 C 0.01 0.43 5.47 84.66 0.46 0.89 16 18 N -0.95 -58.51 13.96 21.45 0.30 -58.22 16 19 Si 0.95 42.51 27.47 68.60 1.88 44.40 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 23 C -0.16 -2.42 5.80 30.69 0.18 -2.24 16 24 C 0.06 0.93 6.68 72.02 0.48 1.41 16 25 O -0.39 -6.58 10.41 -148.98 -1.55 -8.13 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.41 7.66 6.54 -92.71 -0.61 7.05 16 32 H 0.42 12.21 7.94 -92.71 -0.74 11.48 16 33 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.03 1.44 7.58 -2.38 -0.02 1.42 16 36 H 0.04 1.51 7.19 -2.39 -0.02 1.49 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.04 0.73 7.75 -2.39 -0.02 0.72 16 Total: -1.00 -68.43 337.84 0.07 -68.36 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.35 Total: 21.78 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.42 Total: 7.15 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.23 Total: -98.47 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.66 Total: -43.22 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.40 kcal Total: -68.43 0.07 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323226914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.730 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds