Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99958 * 2 1 4 4 H 1.09004 * 110.54021 * 332.61434 * 3 2 1 5 5 C 1.54891 * 110.48672 * 95.22751 * 3 2 1 6 6 C 1.54888 * 102.75120 * 156.61906 * 5 3 2 7 7 C 1.54261 * 104.19672 * 322.06034 * 6 5 3 8 8 H 1.08998 * 110.03492 * 264.32506 * 7 6 5 9 9 N 1.46503 * 110.07663 * 142.91518 * 7 6 5 10 10 C 1.34772 * 120.00026 * 87.80597 * 9 7 6 11 11 O 1.21357 * 119.99771 * 0.02562 * 10 9 7 12 12 C 1.49444 * 120.00266 * 180.02562 * 10 9 7 13 13 O 1.21356 * 119.99727 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00266 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00283 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.46832 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46975 * 89.99898 * 21 19 17 23 23 H 1.48500 * 109.47584 * 209.99770 * 21 19 17 24 24 H 1.48499 * 109.47285 * 330.00331 * 21 19 17 25 25 C 1.53876 * 106.59990 * 23.60631 * 7 6 5 26 26 H 1.09000 * 109.47030 * 299.99646 * 1 2 3 27 27 H 1.09004 * 109.47192 * 59.99446 * 1 2 3 28 28 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09005 * 110.75269 * 38.30410 * 5 3 2 30 30 H 1.09004 * 110.91555 * 275.01225 * 5 3 2 31 31 H 1.09000 * 110.48622 * 203.37816 * 6 5 3 32 32 H 1.09001 * 110.59737 * 80.79460 * 6 5 3 33 33 H 0.96995 * 119.99741 * 267.81177 * 9 7 6 34 34 H 0.96995 * 120.00233 * 0.02562 * 14 12 10 35 35 H 1.09007 * 109.46946 * 300.00210 * 15 14 12 36 36 H 1.09003 * 109.47308 * 59.99761 * 15 14 12 37 37 H 1.08991 * 109.47140 * 299.99663 * 16 15 14 38 38 H 1.08996 * 109.47153 * 59.99995 * 16 15 14 39 39 H 0.97004 * 120.00671 * 180.02562 * 20 19 17 40 40 H 1.08995 * 110.03160 * 119.28453 * 25 7 6 41 41 H 1.08998 * 110.03319 * 240.71542 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3377 2.0235 -0.4695 5 6 2.3514 1.7469 1.4449 6 6 3.4601 2.8062 1.2259 7 6 4.2949 2.2439 0.0569 8 1 5.1568 1.6989 0.4418 9 7 4.7395 3.3349 -0.8139 10 6 5.8931 3.9801 -0.5503 11 8 6.5637 3.6569 0.4082 12 6 6.3464 5.0934 -1.4382 13 8 5.6756 5.4168 -2.3964 14 7 7.5002 5.7382 -1.1749 15 6 7.9444 6.8299 -2.0450 16 6 9.2728 7.3858 -1.5282 17 6 9.7299 8.5084 -2.4236 18 1 9.1329 8.7963 -3.2763 19 6 10.9104 9.1680 -2.1543 20 7 11.6376 8.8172 -1.1163 21 14 11.4774 10.5590 -3.2646 22 1 10.9327 11.8463 -2.7629 23 1 12.9613 10.6169 -3.2673 24 1 10.9889 10.3200 -4.6464 25 6 3.3731 1.2897 -0.7226 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.7298 0.9062 2.0265 30 1 1.4831 2.1914 1.9313 31 1 4.0748 2.9056 2.1205 32 1 3.0237 3.7677 0.9553 33 1 4.2037 3.5930 -1.5801 34 1 8.0366 5.4795 -0.4093 35 1 8.0782 6.4544 -3.0596 36 1 7.1949 7.6214 -2.0464 37 1 9.1395 7.7612 -0.5137 38 1 10.0221 6.5943 -1.5272 39 1 12.4680 9.2814 -0.9265 40 1 3.2558 1.6389 -1.7484 41 1 3.7876 0.2817 -0.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323877208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -133.985897 kcal Electronic energy + Delta-G solvation = -21738.315687 eV Core-core repulsion = 18231.693840 eV Total energy + Delta-G solvation = -3506.621847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62249 -39.37496 -38.20852 -36.66263 -35.15093 -33.46493 -32.80767 -29.83045 -29.21761 -28.14396 -26.43055 -25.44895 -23.52896 -21.26697 -21.07012 -20.71140 -20.25605 -18.25175 -17.37374 -16.82163 -16.45564 -16.18769 -15.69383 -15.39583 -15.32272 -14.80141 -14.47885 -14.28231 -14.01716 -13.73494 -13.45734 -13.11830 -12.94238 -12.37100 -12.31675 -12.14800 -11.79246 -11.70191 -11.50854 -11.24521 -11.11994 -11.06689 -11.00351 -10.67167 -10.40361 -9.97440 -9.79867 -9.45206 -9.34787 -9.19398 -8.70242 -8.42297 -6.10549 -4.14274 1.60474 2.52038 3.28639 3.30381 3.34971 3.38637 3.43248 3.85540 4.11829 4.17141 4.39882 4.63858 4.75548 4.84055 4.88439 4.93149 5.00487 5.05647 5.13807 5.17365 5.26267 5.29432 5.41886 5.61910 5.66730 5.80846 5.83415 6.17262 6.21559 6.23150 6.58934 6.68750 6.79906 7.05236 7.46366 7.57372 7.66662 7.86669 7.92687 8.20743 8.33535 8.91307 9.50597 11.00876 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056804 B = 0.002339 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.806017 B =11965.888262 C =12229.616647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.082 3.918 4 H 0.071 0.929 5 C -0.143 4.143 6 C -0.135 4.135 7 C 0.141 3.859 8 H 0.100 0.900 9 N -0.701 5.701 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.497 3.503 13 O -0.534 6.534 14 N -0.686 5.686 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.130 4.130 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.025 -16.372 3.898 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.024 3.976 4 H 0.089 0.911 5 C -0.181 4.181 6 C -0.174 4.174 7 C 0.037 3.963 8 H 0.118 0.882 9 N -0.356 5.356 10 C 0.290 3.710 11 O -0.394 6.394 12 C 0.276 3.724 13 O -0.413 6.413 14 N -0.336 5.336 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.168 4.168 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.699 -16.479 3.984 26.756 hybrid contribution 0.168 1.029 -0.497 1.155 sum -20.531 -15.450 3.487 25.930 Atomic orbital electron populations 1.22790 0.81023 1.02784 1.00017 1.87919 1.19696 1.27511 1.94941 1.23023 0.94399 0.84568 0.95578 0.91082 1.22957 0.98843 0.99220 0.97075 1.22754 0.96973 0.98763 0.98875 1.21635 0.97677 0.87013 0.90002 0.88153 1.45961 1.23208 1.35138 1.31257 1.20480 0.81611 0.83468 0.85438 1.90757 1.54491 1.65294 1.28809 1.19992 0.83050 0.83715 0.85645 1.90729 1.54910 1.66342 1.29277 1.46237 1.21433 1.34736 1.31243 1.21938 0.98934 0.86441 0.92995 1.19357 0.89501 0.96433 0.97389 1.21010 1.06530 1.16774 1.11892 0.92166 1.25008 0.96475 0.97432 0.95409 1.69956 1.14371 1.41369 1.27341 0.86491 0.77766 0.82186 0.80970 1.20559 1.21153 1.19733 1.22483 0.93998 1.00986 0.99304 0.94009 0.93969 0.89636 0.90062 0.91106 0.90238 0.90653 0.75161 0.75373 0.91858 0.91870 0.95660 0.95642 0.92766 0.90095 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.38 -3.18 10.41 -35.23 -0.37 -3.55 16 3 C 0.08 0.60 3.35 -25.07 -0.08 0.51 16 4 H 0.07 0.45 7.82 -51.93 -0.41 0.04 16 5 C -0.14 -1.01 6.62 -24.74 -0.16 -1.18 16 6 C -0.13 -1.14 6.53 -25.08 -0.16 -1.31 16 7 C 0.14 1.31 3.24 -66.81 -0.22 1.09 16 8 H 0.10 1.05 7.56 -51.93 -0.39 0.66 16 9 N -0.70 -7.78 5.03 -53.15 -0.27 -8.04 16 10 C 0.51 7.46 7.89 -11.59 -0.09 7.36 16 11 O -0.52 -8.59 16.13 5.49 0.09 -8.50 16 12 C 0.50 8.45 7.89 -11.59 -0.09 8.36 16 13 O -0.53 -9.97 16.48 5.49 0.09 -9.88 16 14 N -0.69 -12.44 5.55 -60.73 -0.34 -12.78 16 15 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 16 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.13 -0.98 6.33 -25.61 -0.16 -1.14 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.41 4.07 7.79 -40.82 -0.32 3.75 16 34 H 0.41 7.11 7.94 -40.82 -0.32 6.79 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 0.55 7.62 -51.93 -0.40 0.16 16 41 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -31.50 348.01 -6.73 -38.23 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.44 Total: 3.99 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.45 Total: 4.41 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.13 Total: -46.16 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.19 Total: -21.93 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.50 -6.73 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323877208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.760 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds