Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99958 * 2 1 4 4 H 1.09004 * 110.54021 * 332.61434 * 3 2 1 5 5 C 1.54891 * 110.48672 * 95.22751 * 3 2 1 6 6 C 1.54888 * 102.75120 * 156.61906 * 5 3 2 7 7 C 1.54261 * 104.19672 * 322.06034 * 6 5 3 8 8 H 1.08998 * 110.03492 * 264.32506 * 7 6 5 9 9 N 1.46503 * 110.07663 * 142.91518 * 7 6 5 10 10 C 1.34772 * 120.00026 * 87.80597 * 9 7 6 11 11 O 1.21357 * 119.99771 * 0.02562 * 10 9 7 12 12 C 1.49444 * 120.00266 * 180.02562 * 10 9 7 13 13 O 1.21356 * 119.99727 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00266 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00283 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.46832 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46975 * 89.99898 * 21 19 17 23 23 H 1.48500 * 109.47584 * 209.99770 * 21 19 17 24 24 H 1.48499 * 109.47285 * 330.00331 * 21 19 17 25 25 C 1.53876 * 106.59990 * 23.60631 * 7 6 5 26 26 H 1.09000 * 109.47030 * 299.99646 * 1 2 3 27 27 H 1.09004 * 109.47192 * 59.99446 * 1 2 3 28 28 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09005 * 110.75269 * 38.30410 * 5 3 2 30 30 H 1.09004 * 110.91555 * 275.01225 * 5 3 2 31 31 H 1.09000 * 110.48622 * 203.37816 * 6 5 3 32 32 H 1.09001 * 110.59737 * 80.79460 * 6 5 3 33 33 H 0.96995 * 119.99741 * 267.81177 * 9 7 6 34 34 H 0.96995 * 120.00233 * 0.02562 * 14 12 10 35 35 H 1.09007 * 109.46946 * 300.00210 * 15 14 12 36 36 H 1.09003 * 109.47308 * 59.99761 * 15 14 12 37 37 H 1.08991 * 109.47140 * 299.99663 * 16 15 14 38 38 H 1.08996 * 109.47153 * 59.99995 * 16 15 14 39 39 H 0.97004 * 120.00671 * 180.02562 * 20 19 17 40 40 H 1.08995 * 110.03160 * 119.28453 * 25 7 6 41 41 H 1.08998 * 110.03319 * 240.71542 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3377 2.0235 -0.4695 5 6 2.3514 1.7469 1.4449 6 6 3.4601 2.8062 1.2259 7 6 4.2949 2.2439 0.0569 8 1 5.1568 1.6989 0.4418 9 7 4.7395 3.3349 -0.8139 10 6 5.8931 3.9801 -0.5503 11 8 6.5637 3.6569 0.4082 12 6 6.3464 5.0934 -1.4382 13 8 5.6756 5.4168 -2.3964 14 7 7.5002 5.7382 -1.1749 15 6 7.9444 6.8299 -2.0450 16 6 9.2728 7.3858 -1.5282 17 6 9.7299 8.5084 -2.4236 18 1 9.1329 8.7963 -3.2763 19 6 10.9104 9.1680 -2.1543 20 7 11.6376 8.8172 -1.1163 21 14 11.4774 10.5590 -3.2646 22 1 10.9327 11.8463 -2.7629 23 1 12.9613 10.6169 -3.2673 24 1 10.9889 10.3200 -4.6464 25 6 3.3731 1.2897 -0.7226 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.7298 0.9062 2.0265 30 1 1.4831 2.1914 1.9313 31 1 4.0748 2.9056 2.1205 32 1 3.0237 3.7677 0.9553 33 1 4.2037 3.5930 -1.5801 34 1 8.0366 5.4795 -0.4093 35 1 8.0782 6.4544 -3.0596 36 1 7.1949 7.6214 -2.0464 37 1 9.1395 7.7612 -0.5137 38 1 10.0221 6.5943 -1.5272 39 1 12.4680 9.2814 -0.9265 40 1 3.2558 1.6389 -1.7484 41 1 3.7876 0.2817 -0.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323877208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -157.228948 kcal Electronic energy + Delta-G solvation = -21739.323582 eV Core-core repulsion = 18231.693840 eV Total energy + Delta-G solvation = -3507.629742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80627 -40.27344 -39.32649 -37.47427 -36.75696 -34.93729 -34.26583 -31.69477 -29.84055 -28.93301 -27.33549 -26.77953 -25.00792 -22.87805 -21.87924 -21.54462 -21.48117 -19.53014 -18.59997 -18.12567 -17.59756 -17.15776 -16.98398 -16.51425 -16.48555 -16.02156 -15.81992 -15.66064 -15.00130 -14.63439 -14.59223 -14.31020 -14.26149 -13.74196 -13.26314 -13.11883 -12.94528 -12.86910 -12.68631 -12.52798 -12.35151 -12.28321 -12.24578 -11.83410 -11.68511 -11.56674 -11.43850 -10.70614 -10.61683 -10.52345 -10.30015 -10.19225 -8.23452 -6.34703 0.31597 1.30728 1.43701 1.43875 1.55476 2.11380 2.39787 2.67094 2.81282 3.11420 3.39229 3.50834 3.54127 4.07254 4.23084 4.29858 4.32543 4.38690 4.45070 4.45387 4.52076 4.60347 4.61581 4.80545 4.81300 4.92115 4.95120 5.03080 5.07797 5.13649 5.18144 5.34306 5.42641 5.54773 5.75483 5.93673 6.12799 6.30427 6.36343 6.71198 6.79865 6.92891 7.34795 8.88490 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056804 B = 0.002339 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.806017 B =11965.888262 C =12229.616647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.083 3.917 4 H 0.085 0.915 5 C -0.136 4.136 6 C -0.132 4.132 7 C 0.139 3.861 8 H 0.088 0.912 9 N -0.681 5.681 10 C 0.516 3.484 11 O -0.541 6.541 12 C 0.500 3.500 13 O -0.549 6.549 14 N -0.689 5.689 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.263 1.263 25 C -0.124 4.124 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.420 0.580 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.091 0.909 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.614 -16.506 3.161 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.025 3.975 4 H 0.103 0.897 5 C -0.174 4.174 6 C -0.171 4.171 7 C 0.035 3.965 8 H 0.106 0.894 9 N -0.335 5.335 10 C 0.296 3.704 11 O -0.418 6.418 12 C 0.280 3.720 13 O -0.427 6.427 14 N -0.340 5.340 15 C 0.015 3.985 16 C -0.020 4.020 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.188 1.188 25 C -0.162 4.162 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.258 0.742 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.340 -16.642 3.239 28.045 hybrid contribution 0.590 0.999 -0.248 1.186 sum -21.751 -15.643 2.991 26.958 Atomic orbital electron populations 1.22961 0.79687 1.03718 1.00837 1.87889 1.21251 1.27984 1.95042 1.23041 0.94297 0.84698 0.95440 0.89722 1.22909 0.98656 0.98542 0.97285 1.22703 0.97133 0.99313 0.97928 1.21785 0.97786 0.86573 0.90346 0.89350 1.45946 1.21735 1.34494 1.31320 1.19977 0.82510 0.83115 0.84798 1.90761 1.55471 1.65926 1.29605 1.20356 0.82198 0.83828 0.85580 1.90717 1.55163 1.66870 1.29984 1.46078 1.22226 1.34522 1.31170 1.21481 0.96868 0.87147 0.92998 1.19180 0.91042 0.95469 0.96268 1.21450 1.06913 1.17522 1.12389 0.91663 1.25934 0.96630 1.00098 0.96861 1.70076 1.14868 1.42769 1.29032 0.85392 0.77245 0.78865 0.79212 1.19780 1.20793 1.18751 1.22433 0.93902 1.00242 0.99627 0.93198 0.93108 0.88782 0.90514 0.89804 0.91233 0.90466 0.74173 0.74945 0.92013 0.91952 0.97410 0.97431 0.92582 0.89040 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.40 -5.95 10.41 -148.98 -1.55 -7.50 16 3 C 0.08 1.03 3.35 31.67 0.11 1.14 16 4 H 0.08 0.83 7.82 -2.38 -0.02 0.81 16 5 C -0.14 -1.69 6.62 31.89 0.21 -1.47 16 6 C -0.13 -2.07 6.53 31.67 0.21 -1.86 16 7 C 0.14 2.41 3.24 45.71 0.15 2.56 16 8 H 0.09 1.81 7.56 -2.39 -0.02 1.79 16 9 N -0.68 -14.19 5.03 -440.44 -2.22 -16.40 16 10 C 0.52 14.73 7.89 87.27 0.69 15.42 16 11 O -0.54 -17.75 16.13 -3.27 -0.05 -17.81 16 12 C 0.50 16.70 7.89 87.27 0.69 17.39 16 13 O -0.55 -19.89 16.48 -3.27 -0.05 -19.95 16 14 N -0.69 -25.01 5.55 -464.40 -2.58 -27.59 16 15 C 0.14 5.75 5.61 86.38 0.48 6.24 16 16 C 0.02 0.90 5.09 29.85 0.15 1.06 16 17 C -0.54 -30.01 9.11 25.60 0.23 -29.77 16 18 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.00 0.19 5.46 84.66 0.46 0.66 16 20 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 21 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 25 C -0.12 -1.66 6.33 31.32 0.20 -1.46 16 26 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.37 8.11 -2.38 -0.02 0.35 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 33 H 0.42 7.51 7.79 -92.71 -0.72 6.79 16 34 H 0.41 14.55 7.94 -92.71 -0.74 13.81 16 35 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.09 1.04 7.62 -2.39 -0.02 1.02 16 41 H 0.09 1.27 8.07 -2.39 -0.02 1.25 16 Total: -1.00 -66.36 348.01 0.25 -66.11 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.42 Total: 21.01 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 4.81 Total: 11.32 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.51 Total: -98.55 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.66 Total: -45.25 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.36 0.25 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323877208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.115 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds