Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08997 * 110.67122 * 29.30254 * 3 2 1 5 5 C 1.54884 * 110.75646 * 266.06384 * 3 2 1 6 6 C 1.54467 * 104.10097 * 203.89578 * 5 3 2 7 7 C 1.53877 * 106.68319 * 23.34365 * 6 5 3 8 8 H 1.08997 * 110.06825 * 240.85014 * 7 6 5 9 9 N 1.46499 * 110.02718 * 119.44662 * 7 6 5 10 10 C 1.34775 * 120.00139 * 87.83764 * 9 7 6 11 11 O 1.21346 * 120.00233 * 359.97438 * 10 9 7 12 12 C 1.49454 * 119.99757 * 179.97438 * 10 9 7 13 13 O 1.21346 * 120.00010 * 359.97438 * 12 10 9 14 14 N 1.34784 * 119.99692 * 179.97438 * 12 10 9 15 15 C 1.46496 * 119.99716 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47061 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47251 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00126 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47055 * 59.99699 * 21 19 17 23 23 H 1.48498 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46931 * 299.99555 * 21 19 17 25 25 C 1.54263 * 106.59918 * 0.15714 * 7 6 5 26 26 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 27 27 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 29 29 H 1.08998 * 110.48927 * 322.42623 * 5 3 2 30 30 H 1.09002 * 110.48568 * 85.07000 * 5 3 2 31 31 H 1.09003 * 109.85472 * 264.10603 * 6 5 3 32 32 H 1.08996 * 110.16247 * 142.75537 * 6 5 3 33 33 H 0.97001 * 119.99974 * 267.82756 * 9 7 6 34 34 H 0.97001 * 119.99951 * 359.97438 * 14 12 10 35 35 H 1.09000 * 109.47151 * 300.00343 * 15 14 12 36 36 H 1.08998 * 109.47268 * 59.99937 * 15 14 12 37 37 H 1.09000 * 109.47386 * 300.00160 * 16 15 14 38 38 H 1.09007 * 109.47005 * 60.00035 * 16 15 14 39 39 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 40 40 H 1.08993 * 110.48422 * 217.70642 * 25 7 6 41 41 H 1.09003 * 110.59688 * 95.12054 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3542 2.0187 0.4991 5 6 2.3243 1.7666 -1.4449 6 6 3.4441 2.8160 -1.2700 7 6 4.1299 2.5106 0.0732 8 1 4.0328 3.3634 0.7451 9 7 5.5454 2.2025 -0.1448 10 6 6.4558 3.1960 -0.1667 11 8 6.1029 4.3459 -0.0063 12 6 7.8999 2.8815 -0.3885 13 8 8.2528 1.7316 -0.5484 14 7 8.8103 3.8752 -0.4109 15 6 10.2259 3.5668 -0.6278 16 6 11.0391 4.8626 -0.6070 17 6 12.4954 4.5454 -0.8295 18 1 12.8096 3.5219 -0.9710 19 6 13.4268 5.5618 -0.8513 20 7 13.0442 6.8082 -0.6784 21 14 15.2320 5.1687 -1.1277 22 1 15.3974 4.5021 -2.4443 23 1 16.0212 6.4264 -1.1075 24 1 15.7121 4.2650 -0.0516 25 6 3.4074 1.2843 0.6681 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.6793 0.9282 -2.0442 30 1 1.4430 2.2170 -1.9016 31 1 3.0135 3.8172 -1.2503 32 1 4.1646 2.7357 -2.0839 33 1 5.8275 1.2833 -0.2732 34 1 8.5281 4.7945 -0.2834 35 1 10.5786 2.9042 0.1626 36 1 10.3472 3.0767 -1.5937 37 1 10.6864 5.5256 -1.3971 38 1 10.9177 5.3523 0.3593 39 1 13.6995 7.5232 -0.6941 40 1 3.3149 1.3836 1.7495 41 1 3.9377 0.3664 0.4141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323877210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -133.654193 kcal Electronic energy + Delta-G solvation = -21732.102236 eV Core-core repulsion = 18225.494772 eV Total energy + Delta-G solvation = -3506.607463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61742 -39.35800 -38.20547 -36.67218 -35.14261 -33.45490 -32.79891 -29.82220 -29.21613 -28.15826 -26.43903 -25.43734 -23.53148 -21.43786 -21.08330 -20.60078 -20.06367 -18.23447 -17.48371 -16.72550 -16.44275 -16.24758 -15.70419 -15.38250 -15.24448 -14.75797 -14.61273 -14.42549 -14.12943 -13.69724 -13.42496 -12.98263 -12.89740 -12.32538 -12.21494 -12.18987 -11.87800 -11.72380 -11.52074 -11.26437 -11.19675 -11.04534 -10.87967 -10.68405 -10.38772 -9.97369 -9.79488 -9.44929 -9.35278 -9.19418 -8.69111 -8.41307 -6.09861 -4.13587 1.61156 2.50591 3.30243 3.30879 3.35020 3.37881 3.43520 3.85838 4.14651 4.22904 4.40851 4.50753 4.76903 4.80830 4.88012 4.92372 5.00281 5.06029 5.13533 5.18220 5.26858 5.30057 5.43111 5.61115 5.65098 5.80233 5.83499 6.18240 6.23218 6.24145 6.60032 6.69714 6.78580 7.06433 7.46897 7.58007 7.67423 7.87274 7.93351 8.21571 8.34531 8.91737 9.51171 11.01530 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.058848 B = 0.002330 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.686430 B =12012.860848 C =12242.621725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.083 3.917 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.135 4.135 7 C 0.141 3.859 8 H 0.099 0.901 9 N -0.700 5.700 10 C 0.509 3.491 11 O -0.520 6.520 12 C 0.496 3.504 13 O -0.533 6.533 14 N -0.686 5.686 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.127 4.127 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.348 -10.150 1.401 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.183 4.183 6 C -0.174 4.174 7 C 0.037 3.963 8 H 0.117 0.883 9 N -0.354 5.354 10 C 0.290 3.710 11 O -0.395 6.395 12 C 0.276 3.724 13 O -0.411 6.411 14 N -0.337 5.337 15 C -0.003 4.003 16 C -0.026 4.026 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.165 4.165 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.129 -10.097 1.414 27.118 hybrid contribution 0.764 0.157 -0.191 0.803 sum -24.365 -9.939 1.223 26.343 Atomic orbital electron populations 1.22791 0.80982 1.02821 1.00007 1.87915 1.19718 1.27352 1.94916 1.23107 0.94188 0.84653 0.95580 0.90834 1.22881 0.98754 0.99332 0.97282 1.22583 0.97808 0.99412 0.97569 1.21591 0.79341 0.98276 0.97119 0.88261 1.45924 1.06591 1.10961 1.71921 1.20485 0.87486 0.85548 0.77466 1.90751 1.81361 1.19969 1.47390 1.19988 0.86520 0.86230 0.79681 1.90732 1.81068 1.19959 1.49357 1.46236 1.08848 1.10243 1.68362 1.21934 0.76194 1.01403 1.00781 1.19352 0.94388 0.90652 0.98246 1.20976 0.91353 0.93652 1.50284 0.92213 1.25008 0.99338 0.94968 0.94990 1.69951 1.34561 0.99143 1.49403 0.86546 0.84336 0.77590 0.78898 1.20108 1.21238 1.20104 1.22656 0.94705 0.98506 1.00616 0.93998 0.89607 0.93961 0.90332 0.91262 0.90571 0.90479 0.75024 0.75392 0.91860 0.91864 0.95665 0.95663 0.92722 0.89978 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.86 101.05 1.10 1.26 16 2 O -0.38 -3.18 10.49 -35.23 -0.37 -3.55 16 3 C 0.08 0.60 3.36 -24.74 -0.08 0.51 16 4 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 5 C -0.14 -1.04 6.57 -24.97 -0.16 -1.20 16 6 C -0.13 -1.15 6.60 -25.50 -0.17 -1.32 16 7 C 0.14 1.30 3.25 -66.81 -0.22 1.08 16 8 H 0.10 0.98 7.56 -51.93 -0.39 0.59 16 9 N -0.70 -7.92 4.98 -53.15 -0.26 -8.19 16 10 C 0.51 7.50 7.89 -11.58 -0.09 7.41 16 11 O -0.52 -8.58 16.13 5.50 0.09 -8.49 16 12 C 0.50 8.52 7.89 -11.58 -0.09 8.43 16 13 O -0.53 -10.08 16.48 5.50 0.09 -9.99 16 14 N -0.69 -12.51 5.55 -60.73 -0.34 -12.84 16 15 C 0.12 2.48 5.61 -4.05 -0.02 2.46 16 16 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 17 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.13 -0.96 6.25 -25.07 -0.16 -1.12 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.19 8.11 -51.93 -0.42 -0.23 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.41 4.31 7.83 -40.82 -0.32 3.99 16 34 H 0.41 7.13 7.94 -40.82 -0.32 6.80 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.69 7.74 -51.93 -0.40 0.29 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -31.57 348.14 -6.73 -38.29 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.45 Total: 4.14 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.45 Total: 4.48 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.13 Total: -46.40 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.19 Total: -22.03 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.57 -6.73 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323877210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.360 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds