Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08997 * 110.67122 * 29.30254 * 3 2 1 5 5 C 1.54884 * 110.75646 * 266.06384 * 3 2 1 6 6 C 1.54467 * 104.10097 * 203.89578 * 5 3 2 7 7 C 1.53877 * 106.68319 * 23.34365 * 6 5 3 8 8 H 1.08997 * 110.06825 * 240.85014 * 7 6 5 9 9 N 1.46499 * 110.02718 * 119.44662 * 7 6 5 10 10 C 1.34775 * 120.00139 * 87.83764 * 9 7 6 11 11 O 1.21346 * 120.00233 * 359.97438 * 10 9 7 12 12 C 1.49454 * 119.99757 * 179.97438 * 10 9 7 13 13 O 1.21346 * 120.00010 * 359.97438 * 12 10 9 14 14 N 1.34784 * 119.99692 * 179.97438 * 12 10 9 15 15 C 1.46496 * 119.99716 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47061 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47251 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00126 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47055 * 59.99699 * 21 19 17 23 23 H 1.48498 * 109.46803 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46931 * 299.99555 * 21 19 17 25 25 C 1.54263 * 106.59918 * 0.15714 * 7 6 5 26 26 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 27 27 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 29 29 H 1.08998 * 110.48927 * 322.42623 * 5 3 2 30 30 H 1.09002 * 110.48568 * 85.07000 * 5 3 2 31 31 H 1.09003 * 109.85472 * 264.10603 * 6 5 3 32 32 H 1.08996 * 110.16247 * 142.75537 * 6 5 3 33 33 H 0.97001 * 119.99974 * 267.82756 * 9 7 6 34 34 H 0.97001 * 119.99951 * 359.97438 * 14 12 10 35 35 H 1.09000 * 109.47151 * 300.00343 * 15 14 12 36 36 H 1.08998 * 109.47268 * 59.99937 * 15 14 12 37 37 H 1.09000 * 109.47386 * 300.00160 * 16 15 14 38 38 H 1.09007 * 109.47005 * 60.00035 * 16 15 14 39 39 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 40 40 H 1.08993 * 110.48422 * 217.70642 * 25 7 6 41 41 H 1.09003 * 110.59688 * 95.12054 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3542 2.0187 0.4991 5 6 2.3243 1.7666 -1.4449 6 6 3.4441 2.8160 -1.2700 7 6 4.1299 2.5106 0.0732 8 1 4.0328 3.3634 0.7451 9 7 5.5454 2.2025 -0.1448 10 6 6.4558 3.1960 -0.1667 11 8 6.1029 4.3459 -0.0063 12 6 7.8999 2.8815 -0.3885 13 8 8.2528 1.7316 -0.5484 14 7 8.8103 3.8752 -0.4109 15 6 10.2259 3.5668 -0.6278 16 6 11.0391 4.8626 -0.6070 17 6 12.4954 4.5454 -0.8295 18 1 12.8096 3.5219 -0.9710 19 6 13.4268 5.5618 -0.8513 20 7 13.0442 6.8082 -0.6784 21 14 15.2320 5.1687 -1.1277 22 1 15.3974 4.5021 -2.4443 23 1 16.0212 6.4264 -1.1075 24 1 15.7121 4.2650 -0.0516 25 6 3.4074 1.2843 0.6681 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.6793 0.9282 -2.0442 30 1 1.4430 2.2170 -1.9016 31 1 3.0135 3.8172 -1.2503 32 1 4.1646 2.7357 -2.0839 33 1 5.8275 1.2833 -0.2732 34 1 8.5281 4.7945 -0.2834 35 1 10.5786 2.9042 0.1626 36 1 10.3472 3.0767 -1.5937 37 1 10.6864 5.5256 -1.3971 38 1 10.9177 5.3523 0.3593 39 1 13.6995 7.5232 -0.6941 40 1 3.3149 1.3836 1.7495 41 1 3.9377 0.3664 0.4141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323877210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -156.949310 kcal Electronic energy + Delta-G solvation = -21733.112388 eV Core-core repulsion = 18225.494772 eV Total energy + Delta-G solvation = -3507.617615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80923 -40.26208 -39.32289 -37.48069 -36.76105 -34.93637 -34.26119 -31.69509 -29.83639 -28.93841 -27.35000 -26.77076 -25.01218 -22.89008 -22.08957 -21.62199 -21.08548 -19.52155 -18.59236 -18.21242 -17.56304 -17.20508 -16.90671 -16.52414 -16.51390 -16.03185 -15.77845 -15.57822 -15.24523 -14.83829 -14.51317 -14.30089 -14.26639 -13.54725 -13.26888 -12.96226 -12.95036 -12.91439 -12.72281 -12.54620 -12.41047 -12.27232 -12.25116 -11.88277 -11.68426 -11.48818 -11.45564 -10.70066 -10.60952 -10.51430 -10.31757 -10.19675 -8.23245 -6.34529 0.31260 1.30047 1.43728 1.45733 1.53899 2.10998 2.39734 2.62352 2.84754 3.11510 3.38935 3.52077 3.62248 3.91880 4.23419 4.30272 4.37541 4.38733 4.44835 4.46021 4.49504 4.60530 4.63516 4.80850 4.83216 4.89929 4.92359 5.03905 5.07685 5.12051 5.21368 5.34796 5.42539 5.54729 5.75450 5.93485 6.12926 6.29885 6.35510 6.70460 6.79555 6.92556 7.34842 8.88472 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.058848 B = 0.002330 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.686430 B =12012.860848 C =12242.621725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.084 3.916 4 H 0.090 0.910 5 C -0.138 4.138 6 C -0.133 4.133 7 C 0.139 3.861 8 H 0.096 0.904 9 N -0.682 5.682 10 C 0.517 3.483 11 O -0.539 6.539 12 C 0.499 3.501 13 O -0.549 6.549 14 N -0.688 5.688 15 C 0.137 3.863 16 C 0.019 3.981 17 C -0.546 4.546 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.267 1.267 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.262 -11.177 1.462 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.026 3.974 4 H 0.107 0.893 5 C -0.176 4.176 6 C -0.171 4.171 7 C 0.035 3.965 8 H 0.114 0.886 9 N -0.336 5.336 10 C 0.297 3.703 11 O -0.416 6.416 12 C 0.279 3.721 13 O -0.428 6.428 14 N -0.340 5.340 15 C 0.015 3.985 16 C -0.019 4.019 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.192 1.192 25 C -0.160 4.160 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.257 0.743 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.088 -11.162 1.476 28.414 hybrid contribution 0.950 0.437 -0.208 1.066 sum -25.138 -10.725 1.268 27.360 Atomic orbital electron populations 1.22964 0.79597 1.03721 1.00913 1.87882 1.21335 1.27890 1.95023 1.23128 0.94082 0.84783 0.95374 0.89253 1.22830 0.98648 0.98596 0.97525 1.22542 0.97902 1.00231 0.96465 1.21790 0.77880 0.99107 0.97737 0.88606 1.45941 1.07113 1.10500 1.69997 1.19944 0.86562 0.85840 0.77973 1.90752 1.81241 1.20704 1.48904 1.20385 0.87523 0.85542 0.78609 1.90720 1.81660 1.20543 1.49889 1.46072 1.08040 1.10897 1.68952 1.21478 0.77362 0.99058 1.00620 1.19174 0.94259 0.91977 0.96482 1.21423 0.92802 0.94043 1.50152 0.91703 1.25931 1.04169 0.94764 0.94603 1.70072 1.36156 1.00132 1.50333 0.85449 0.78537 0.77559 0.79198 1.19211 1.20849 1.19190 1.22625 0.94865 0.97332 1.01186 0.93206 0.88842 0.92915 0.91118 0.89902 0.90087 0.91819 0.74346 0.74905 0.92023 0.92042 0.97401 0.97392 0.92571 0.88973 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.86 113.37 1.23 1.44 16 2 O -0.40 -5.98 10.49 -148.98 -1.56 -7.54 16 3 C 0.08 1.03 3.36 31.88 0.11 1.14 16 4 H 0.09 0.82 7.85 -2.39 -0.02 0.80 16 5 C -0.14 -1.74 6.57 31.74 0.21 -1.53 16 6 C -0.13 -2.08 6.60 31.39 0.21 -1.88 16 7 C 0.14 2.35 3.25 45.72 0.15 2.50 16 8 H 0.10 1.76 7.56 -2.39 -0.02 1.74 16 9 N -0.68 -14.73 4.98 -440.44 -2.19 -16.92 16 10 C 0.52 14.88 7.89 87.27 0.69 15.57 16 11 O -0.54 -17.50 16.13 -3.23 -0.05 -17.55 16 12 C 0.50 16.93 7.89 87.27 0.69 17.62 16 13 O -0.55 -20.43 16.48 -3.23 -0.05 -20.48 16 14 N -0.69 -25.19 5.55 -464.42 -2.58 -27.77 16 15 C 0.14 5.79 5.61 86.38 0.48 6.28 16 16 C 0.02 0.94 5.09 29.85 0.15 1.09 16 17 C -0.55 -30.20 9.11 25.60 0.23 -29.96 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 19 C 0.00 0.23 5.46 84.66 0.46 0.69 16 20 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 21 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.12 -1.63 6.25 31.67 0.20 -1.43 16 26 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.35 8.11 -2.39 -0.02 0.33 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.19 7.92 -2.39 -0.02 1.17 16 33 H 0.42 8.24 7.83 -92.71 -0.73 7.52 16 34 H 0.41 14.58 7.94 -92.71 -0.74 13.84 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.21 7.74 -2.39 -0.02 1.19 16 Total: -1.00 -66.47 348.14 0.26 -66.21 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.42 Total: 21.64 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 4.81 Total: 11.54 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.48 Total: -99.26 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.67 Total: -45.57 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.47 0.26 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323877210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.739 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds