Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.87328 * 2 1 4 4 N 1.46498 * 109.46778 * 59.29887 * 3 2 1 5 5 C 1.34775 * 119.99689 * 179.97438 * 4 3 2 6 6 O 1.21343 * 120.00459 * 0.02562 * 5 4 3 7 7 C 1.49453 * 119.99799 * 180.02562 * 5 4 3 8 8 O 1.21353 * 120.00208 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99937 * 179.72511 * 7 5 4 10 10 C 1.46504 * 119.99858 * 180.27545 * 9 7 5 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00518 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47447 * 60.00040 * 16 14 12 18 18 H 1.48504 * 109.46883 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47066 * 299.99744 * 16 14 12 20 20 C 1.54104 * 109.87811 * 238.99735 * 2 1 3 21 21 C 1.54814 * 104.18466 * 242.45772 * 20 2 1 22 22 C 1.54988 * 102.09415 * 20.87746 * 21 20 2 23 23 O 1.43741 * 109.88121 * 121.00942 * 2 1 3 24 24 H 1.08997 * 109.47424 * 60.69832 * 1 2 3 25 25 H 1.09002 * 109.47220 * 180.70025 * 1 2 3 26 26 H 1.09002 * 109.46660 * 300.70136 * 1 2 3 27 27 H 1.08998 * 109.46943 * 299.30606 * 3 2 1 28 28 H 1.08994 * 109.47116 * 179.30217 * 3 2 1 29 29 H 0.97000 * 120.00381 * 0.02562 * 4 3 2 30 30 H 0.97000 * 120.00317 * 0.28450 * 9 7 5 31 31 H 1.08992 * 109.47142 * 300.00148 * 10 9 7 32 32 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 33 33 H 1.08998 * 109.47524 * 300.00356 * 11 10 9 34 34 H 1.09005 * 109.46510 * 60.00408 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.48580 * 1.12565 * 20 2 1 37 37 H 1.08997 * 110.49376 * 123.64707 * 20 2 1 38 38 H 1.08998 * 110.90906 * 139.07820 * 21 20 2 39 39 H 1.09001 * 110.90765 * 262.64111 * 21 20 2 40 40 H 1.08995 * 110.61806 * 81.48321 * 22 21 20 41 41 H 1.08998 * 110.61882 * 204.32066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 7 1.5529 2.1378 1.1876 5 6 1.8855 3.4265 1.3997 6 8 2.5964 4.0081 0.6067 7 6 1.3787 4.1394 2.6115 8 8 0.6681 3.5577 3.4049 9 7 1.7158 5.4265 2.8265 10 6 1.2240 6.1234 4.0175 11 6 1.7485 7.5608 4.0204 12 6 1.2430 8.2775 5.2459 13 1 0.6107 7.7599 5.9519 14 6 1.5872 9.5945 5.4653 15 7 2.3569 10.2250 4.6053 16 14 0.9612 10.4827 6.9847 17 1 1.4400 9.7794 8.2017 18 1 1.4692 11.8782 6.9867 19 1 -0.5237 10.4970 6.9732 20 6 2.0540 -0.7465 -1.2422 21 6 2.8356 -1.9494 -0.6602 22 6 2.2334 -2.0703 0.7627 23 8 2.0188 -0.6964 1.1586 24 1 -0.3634 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 1.7005 1.9516 -0.8961 28 1 3.1399 1.4313 0.0125 29 1 0.9849 1.6729 1.8218 30 1 2.2840 5.8914 2.1925 31 1 0.1341 6.1348 4.0077 32 1 1.5740 5.6068 4.9112 33 1 2.8384 7.5499 4.0299 34 1 1.3980 8.0771 3.1266 35 1 2.5986 11.1517 4.7594 36 1 1.2236 -1.0928 -1.8575 37 1 2.7157 -0.1037 -1.8227 38 1 2.6476 -2.8529 -1.2403 39 1 3.9032 -1.7341 -0.6144 40 1 1.2878 -2.6117 0.7346 41 1 2.9356 -2.5614 1.4363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324535652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -132.077901 kcal Electronic energy + Delta-G solvation = -22033.521353 eV Core-core repulsion = 18526.982243 eV Total energy + Delta-G solvation = -3506.539110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69052 -39.93197 -38.16144 -35.54071 -34.75371 -32.88274 -32.72197 -31.58548 -29.78334 -27.68159 -26.43422 -25.11152 -23.16297 -22.14109 -20.97277 -20.63558 -20.02571 -18.37839 -16.93918 -16.59807 -16.23185 -16.11937 -15.97493 -15.34709 -15.03120 -14.66735 -14.41209 -14.32884 -14.24671 -13.52171 -13.35205 -13.10468 -12.90823 -12.61917 -12.29883 -12.22450 -12.13093 -11.56713 -11.47250 -11.35572 -11.21016 -11.13148 -11.02680 -10.66645 -10.36055 -10.08765 -9.76696 -9.41870 -9.28973 -9.16164 -8.65105 -8.39065 -6.08059 -4.11670 1.68001 2.58059 3.32207 3.34918 3.36251 3.39326 3.50031 3.96556 4.02822 4.25136 4.31522 4.42466 4.54589 4.62865 4.80843 4.83446 5.07401 5.16265 5.24673 5.28651 5.30566 5.34723 5.40758 5.46462 5.53801 5.64587 5.81474 6.14156 6.22040 6.27557 6.51529 6.64100 6.73468 7.12635 7.49992 7.60734 7.72382 7.89461 7.98678 8.24680 8.39027 8.93758 9.52978 11.03418 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.002497 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.630954 B =11212.749620 C =11450.943369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 C 0.129 3.871 4 N -0.698 5.698 5 C 0.507 3.493 6 O -0.524 6.524 7 C 0.497 3.503 8 O -0.533 6.533 9 N -0.687 5.687 10 C 0.119 3.881 11 C 0.011 3.989 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.143 4.143 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.362 6.362 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.416 0.584 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 -24.878 -13.340 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 C 0.005 3.995 4 N -0.353 5.353 5 C 0.288 3.712 6 O -0.399 6.399 7 C 0.277 3.723 8 O -0.411 6.411 9 N -0.337 5.337 10 C -0.003 4.003 11 C -0.026 4.026 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.181 4.181 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.281 6.281 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.253 0.747 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.767 -24.572 -13.156 27.883 hybrid contribution -0.296 0.425 0.559 0.762 sum -1.063 -24.147 -12.597 27.256 Atomic orbital electron populations 1.22289 0.94023 1.02833 1.03290 1.22384 0.94396 0.91942 0.86446 1.21622 1.00055 0.89395 0.88437 1.45672 1.52119 1.11406 1.26102 1.20450 0.81189 0.82671 0.86860 1.90747 1.36275 1.66485 1.46417 1.19968 0.82386 0.83644 0.86306 1.90731 1.37334 1.66461 1.46545 1.46221 1.50002 1.10728 1.26797 1.21927 0.98867 0.95060 0.84436 1.19352 0.97170 0.87801 0.98304 1.20982 1.31544 0.96576 1.07125 0.92215 1.25006 0.94984 0.97504 0.96805 1.69954 1.35853 1.11451 1.35851 0.86549 0.79224 0.78539 0.83072 1.20100 1.21247 1.20112 1.22962 1.00840 0.97220 0.97123 1.23128 1.00941 0.98547 0.96652 1.23589 0.99938 0.84266 0.95340 1.89020 1.85869 1.20821 1.32397 0.91056 0.91792 0.91347 0.89752 0.90329 0.74689 0.75409 0.91894 0.91877 0.95661 0.95672 0.92730 0.89909 0.89803 0.90055 0.90256 0.92074 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.44 37.16 0.31 -0.88 16 2 C 0.09 0.70 0.82 -90.04 -0.07 0.63 16 3 C 0.13 1.28 4.62 -4.04 -0.02 1.27 16 4 N -0.70 -8.82 5.17 -60.73 -0.31 -9.14 16 5 C 0.51 8.00 7.89 -11.58 -0.09 7.91 16 6 O -0.52 -9.13 16.48 5.50 0.09 -9.04 16 7 C 0.50 8.95 7.89 -11.58 -0.09 8.86 16 8 O -0.53 -10.52 16.48 5.49 0.09 -10.43 16 9 N -0.69 -12.92 5.55 -60.73 -0.34 -13.26 16 10 C 0.12 2.54 5.61 -4.04 -0.02 2.51 16 11 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.14 -0.80 6.28 -25.20 -0.16 -0.96 16 21 C -0.15 -0.80 7.16 -24.73 -0.18 -0.97 16 22 C 0.05 0.29 7.67 38.21 0.29 0.59 16 23 O -0.36 -3.52 10.71 -35.23 -0.38 -3.89 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.57 6.83 -51.93 -0.35 0.22 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.42 5.14 6.70 -40.82 -0.27 4.86 16 30 H 0.41 7.35 7.94 -40.82 -0.32 7.03 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.36 7.70 -51.93 -0.40 -0.04 16 37 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -32.24 345.17 -6.88 -39.12 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.37 Total: 4.81 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.58 Total: 5.79 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.09 Total: -47.99 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.20 Total: -23.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.24 -6.88 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324535652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.962 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds