Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.87328 * 2 1 4 4 N 1.46498 * 109.46778 * 59.29887 * 3 2 1 5 5 C 1.34775 * 119.99689 * 179.97438 * 4 3 2 6 6 O 1.21343 * 120.00459 * 0.02562 * 5 4 3 7 7 C 1.49453 * 119.99799 * 180.02562 * 5 4 3 8 8 O 1.21353 * 120.00208 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99937 * 179.72511 * 7 5 4 10 10 C 1.46504 * 119.99858 * 180.27545 * 9 7 5 11 11 C 1.53004 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00518 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99833 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47447 * 60.00040 * 16 14 12 18 18 H 1.48504 * 109.46883 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47066 * 299.99744 * 16 14 12 20 20 C 1.54104 * 109.87811 * 238.99735 * 2 1 3 21 21 C 1.54814 * 104.18466 * 242.45772 * 20 2 1 22 22 C 1.54988 * 102.09415 * 20.87746 * 21 20 2 23 23 O 1.43741 * 109.88121 * 121.00942 * 2 1 3 24 24 H 1.08997 * 109.47424 * 60.69832 * 1 2 3 25 25 H 1.09002 * 109.47220 * 180.70025 * 1 2 3 26 26 H 1.09002 * 109.46660 * 300.70136 * 1 2 3 27 27 H 1.08998 * 109.46943 * 299.30606 * 3 2 1 28 28 H 1.08994 * 109.47116 * 179.30217 * 3 2 1 29 29 H 0.97000 * 120.00381 * 0.02562 * 4 3 2 30 30 H 0.97000 * 120.00317 * 0.28450 * 9 7 5 31 31 H 1.08992 * 109.47142 * 300.00148 * 10 9 7 32 32 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 33 33 H 1.08998 * 109.47524 * 300.00356 * 11 10 9 34 34 H 1.09005 * 109.46510 * 60.00408 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.48580 * 1.12565 * 20 2 1 37 37 H 1.08997 * 110.49376 * 123.64707 * 20 2 1 38 38 H 1.08998 * 110.90906 * 139.07820 * 21 20 2 39 39 H 1.09001 * 110.90765 * 262.64111 * 21 20 2 40 40 H 1.08995 * 110.61806 * 81.48321 * 22 21 20 41 41 H 1.08998 * 110.61882 * 204.32066 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 7 1.5529 2.1378 1.1876 5 6 1.8855 3.4265 1.3997 6 8 2.5964 4.0081 0.6067 7 6 1.3787 4.1394 2.6115 8 8 0.6681 3.5577 3.4049 9 7 1.7158 5.4265 2.8265 10 6 1.2240 6.1234 4.0175 11 6 1.7485 7.5608 4.0204 12 6 1.2430 8.2775 5.2459 13 1 0.6107 7.7599 5.9519 14 6 1.5872 9.5945 5.4653 15 7 2.3569 10.2250 4.6053 16 14 0.9612 10.4827 6.9847 17 1 1.4400 9.7794 8.2017 18 1 1.4692 11.8782 6.9867 19 1 -0.5237 10.4970 6.9732 20 6 2.0540 -0.7465 -1.2422 21 6 2.8356 -1.9494 -0.6602 22 6 2.2334 -2.0703 0.7627 23 8 2.0188 -0.6964 1.1586 24 1 -0.3634 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 1.7005 1.9516 -0.8961 28 1 3.1399 1.4313 0.0125 29 1 0.9849 1.6729 1.8218 30 1 2.2840 5.8914 2.1925 31 1 0.1341 6.1348 4.0077 32 1 1.5740 5.6068 4.9112 33 1 2.8384 7.5499 4.0299 34 1 1.3980 8.0771 3.1266 35 1 2.5986 11.1517 4.7594 36 1 1.2236 -1.0928 -1.8575 37 1 2.7157 -0.1037 -1.8227 38 1 2.6476 -2.8529 -1.2403 39 1 3.9032 -1.7341 -0.6144 40 1 1.2878 -2.6117 0.7346 41 1 2.9356 -2.5614 1.4363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324535652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -156.214321 kcal Electronic energy + Delta-G solvation = -22034.567987 eV Core-core repulsion = 18526.982243 eV Total energy + Delta-G solvation = -3507.585744 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80774 -40.81470 -39.53073 -36.97088 -36.08145 -34.82008 -33.38452 -32.23908 -31.69630 -28.52737 -27.46139 -26.57536 -24.57446 -22.90525 -22.56368 -21.46783 -21.17868 -19.66379 -18.58329 -17.90223 -17.36072 -17.22097 -16.81899 -16.49479 -16.40062 -16.29987 -15.69593 -15.60436 -14.87586 -14.74234 -14.66293 -14.30235 -14.05185 -13.66389 -13.41959 -13.26905 -12.92973 -12.84528 -12.76084 -12.61235 -12.54528 -12.27567 -12.03937 -11.94341 -11.68859 -11.56492 -11.45944 -10.72841 -10.66054 -10.61168 -10.37529 -10.20665 -8.23409 -6.34816 0.30466 1.30250 1.43559 1.45747 1.53903 2.10432 2.39783 2.61760 2.87968 3.11350 3.43153 3.47771 3.68971 3.80652 4.03867 4.13307 4.38111 4.38544 4.44390 4.48857 4.56565 4.67172 4.78465 4.80391 4.85513 4.92298 4.97583 5.04794 5.07080 5.12738 5.22139 5.27247 5.41662 5.54394 5.74926 5.89699 5.97223 6.12663 6.33267 6.68143 6.78995 6.91196 7.34593 8.88482 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.002497 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.630954 B =11212.749620 C =11450.943369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 C 0.123 3.877 4 N -0.682 5.682 5 C 0.513 3.487 6 O -0.542 6.542 7 C 0.499 3.501 8 O -0.550 6.550 9 N -0.688 5.688 10 C 0.137 3.863 11 C 0.019 3.981 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.140 4.140 21 C -0.150 4.150 22 C 0.037 3.963 23 O -0.392 6.392 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.418 0.582 30 H 0.415 0.585 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -26.306 -13.730 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C 0.000 4.000 4 N -0.335 5.335 5 C 0.293 3.707 6 O -0.420 6.420 7 C 0.280 3.720 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.018 4.018 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.793 3.207 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.178 4.178 21 C -0.188 4.188 22 C -0.039 4.039 23 O -0.312 6.312 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.442 -26.053 -13.562 29.407 hybrid contribution -0.078 0.780 0.649 1.018 sum -1.520 -25.273 -12.913 28.421 Atomic orbital electron populations 1.22294 0.93408 1.03554 1.03068 1.22447 0.94797 0.90603 0.87252 1.21906 0.99805 0.90792 0.87476 1.45710 1.50916 1.10193 1.26702 1.19950 0.81331 0.83514 0.85867 1.90746 1.37412 1.67088 1.46758 1.20345 0.81693 0.83118 0.86830 1.90718 1.38023 1.66729 1.47378 1.46062 1.50332 1.11260 1.26233 1.21490 0.98531 0.93061 0.85438 1.19172 0.95918 0.89838 0.96909 1.21423 1.31718 0.97281 1.08032 0.91702 1.25934 0.95066 0.98413 1.00025 1.70075 1.37017 1.11878 1.37798 0.85443 0.78946 0.77206 0.79117 1.19202 1.20810 1.19146 1.22989 1.01578 0.97124 0.96149 1.23125 1.00505 0.99229 0.95934 1.23788 1.00786 0.82987 0.96307 1.88985 1.86150 1.22490 1.33621 0.89882 0.90592 0.92970 0.88570 0.90924 0.74408 0.74896 0.91956 0.92112 0.97447 0.97345 0.92543 0.88114 0.89388 0.88013 0.90691 0.90993 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.44 71.98 0.61 -1.47 16 2 C 0.09 1.27 0.82 -10.42 -0.01 1.26 16 3 C 0.12 2.31 4.62 86.38 0.40 2.71 16 4 N -0.68 -16.76 5.17 -464.42 -2.40 -19.16 16 5 C 0.51 15.98 7.89 87.27 0.69 16.66 16 6 O -0.54 -18.71 16.48 -3.22 -0.05 -18.76 16 7 C 0.50 17.90 7.89 87.27 0.69 18.59 16 8 O -0.55 -21.53 16.48 -3.26 -0.05 -21.59 16 9 N -0.69 -26.07 5.55 -464.40 -2.58 -28.64 16 10 C 0.14 5.92 5.61 86.38 0.48 6.41 16 11 C 0.02 0.98 5.09 29.85 0.15 1.14 16 12 C -0.55 -30.53 9.11 25.60 0.23 -30.29 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 16 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.14 -1.23 6.28 31.59 0.20 -1.03 16 21 C -0.15 -1.20 7.16 31.89 0.23 -0.97 16 22 C 0.04 0.42 7.67 72.66 0.56 0.98 16 23 O -0.39 -7.20 10.71 -148.98 -1.60 -8.80 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.82 6.83 -2.39 -0.02 0.80 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.42 10.10 6.70 -92.71 -0.62 9.48 16 30 H 0.41 15.09 7.94 -92.71 -0.74 14.35 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 36 H 0.10 0.54 7.70 -2.39 -0.02 0.52 16 37 H 0.09 0.71 7.70 -2.39 -0.02 0.69 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -68.32 345.17 0.00 -68.32 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.32 Total: 23.23 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 4.69 Total: 14.69 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.69 Total: -102.85 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.70 Total: -49.15 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.32 0.00 -68.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324535652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.896 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds