Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.99122 * 2 1 4 4 N 1.46502 * 109.46932 * 306.08118 * 3 2 1 5 5 C 1.34775 * 119.99706 * 179.97438 * 4 3 2 6 6 O 1.21350 * 120.00170 * 0.02562 * 5 4 3 7 7 C 1.49449 * 119.99814 * 179.97438 * 5 4 3 8 8 O 1.21350 * 120.00016 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00179 * 180.02562 * 7 5 4 10 10 C 1.46502 * 120.00072 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47145 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99944 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00157 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47141 * 59.99755 * 16 14 12 18 18 H 1.48496 * 109.47216 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46999 * 300.00174 * 16 14 12 20 20 C 1.54106 * 109.87576 * 121.08194 * 2 1 3 21 21 C 1.54807 * 104.18688 * 117.39417 * 20 2 1 22 22 C 1.54994 * 102.09494 * 339.12124 * 21 20 2 23 23 O 1.43739 * 109.87917 * 238.91107 * 2 1 3 24 24 H 1.09002 * 109.47466 * 298.92334 * 1 2 3 25 25 H 1.09003 * 109.46921 * 58.91959 * 1 2 3 26 26 H 1.09002 * 109.47243 * 178.91808 * 1 2 3 27 27 H 1.08997 * 109.47165 * 66.07935 * 3 2 1 28 28 H 1.08997 * 109.46830 * 186.07926 * 3 2 1 29 29 H 0.97003 * 119.99835 * 0.02562 * 4 3 2 30 30 H 0.96995 * 119.99860 * 0.02562 * 9 7 5 31 31 H 1.08997 * 109.47046 * 299.99980 * 10 9 7 32 32 H 1.09003 * 109.46883 * 60.00058 * 10 9 7 33 33 H 1.09006 * 109.46967 * 299.99477 * 11 10 9 34 34 H 1.08995 * 109.47328 * 60.00095 * 11 10 9 35 35 H 0.96996 * 119.99930 * 180.02562 * 15 14 12 36 36 H 1.08997 * 110.48714 * 236.07079 * 20 2 1 37 37 H 1.09000 * 110.48945 * 358.71950 * 20 2 1 38 38 H 1.09005 * 110.90346 * 97.31858 * 21 20 2 39 39 H 1.09000 * 110.90998 * 220.91594 * 21 20 2 40 40 H 1.08998 * 110.61564 * 278.52047 * 22 21 20 41 41 H 1.08997 * 110.62119 * 155.52521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 7 1.4555 2.1748 -1.1163 5 6 1.7719 3.4697 -1.3150 6 8 2.5519 4.0251 -0.5696 7 6 1.1628 4.2214 -2.4541 8 8 0.3831 3.6659 -3.1998 9 7 1.4795 5.5163 -2.6532 10 6 0.8820 6.2532 -3.7695 11 6 1.4055 7.6908 -3.7699 12 6 0.7904 8.4492 -4.9178 13 1 0.0959 7.9550 -5.5810 14 6 1.1143 9.7738 -5.1214 15 7 1.9597 10.3757 -4.3135 16 14 0.3524 10.7135 -6.5447 17 1 -1.1251 10.7241 -6.3964 18 1 0.8605 12.1089 -6.5450 19 1 0.7167 10.0543 -7.8245 20 6 2.0539 -0.7482 1.2412 21 6 2.8323 -1.9524 0.6578 22 6 2.2281 -2.0714 -0.7646 23 8 2.0187 -0.6980 -1.1576 24 1 -0.3634 0.4970 0.8995 25 1 -0.3633 0.5305 -0.8802 26 1 -0.3634 -1.0275 -0.0194 27 1 1.7857 1.9217 0.9394 28 1 3.1375 1.4299 -0.1088 29 1 0.8317 1.7309 -1.7119 30 1 2.1030 5.9602 -2.0574 31 1 1.1493 5.7693 -4.7089 32 1 -0.2026 6.2611 -3.6606 33 1 1.1384 8.1750 -2.8305 34 1 2.4899 7.6826 -3.8790 35 1 2.1872 11.3077 -4.4565 36 1 2.7196 -0.1078 1.8199 37 1 1.2236 -1.0931 1.8575 38 1 3.9002 -1.7390 0.6101 39 1 2.6431 -2.8558 1.2377 40 1 1.2814 -2.6108 -0.7355 41 1 2.9295 -2.5613 -1.4399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324535653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = -131.287242 kcal Electronic energy + Delta-G solvation = -22027.615824 eV Core-core repulsion = 18521.110999 eV Total energy + Delta-G solvation = -3506.504825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70537 -39.94342 -38.16901 -35.56635 -34.77037 -32.87952 -32.71200 -31.56332 -29.78606 -27.71875 -26.44014 -25.11213 -23.16770 -22.14594 -20.97799 -20.60769 -20.05071 -18.39713 -16.94151 -16.61026 -16.22902 -16.12580 -15.97716 -15.36625 -15.02972 -14.68120 -14.42914 -14.32135 -14.25252 -13.51635 -13.32517 -13.11264 -12.92733 -12.62035 -12.30013 -12.22868 -12.13916 -11.55891 -11.46466 -11.35986 -11.21267 -11.13007 -11.02807 -10.66787 -10.36277 -10.09004 -9.76996 -9.42142 -9.29812 -9.16536 -8.65467 -8.39215 -6.08137 -4.11818 1.67410 2.57977 3.32105 3.34580 3.36167 3.39161 3.49603 3.95065 4.02889 4.25065 4.31371 4.42293 4.54427 4.63345 4.80729 4.82692 5.07219 5.16112 5.23894 5.28545 5.30252 5.34577 5.40263 5.46589 5.53931 5.64367 5.81091 6.14352 6.21735 6.27235 6.52203 6.63724 6.73113 7.11545 7.49671 7.60540 7.71677 7.89312 7.98078 8.24398 8.38568 8.93605 9.52884 11.03341 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.049209 B = 0.002487 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.865928 B =11253.840520 C =11495.495960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 C 0.128 3.872 4 N -0.699 5.699 5 C 0.507 3.493 6 O -0.523 6.523 7 C 0.498 3.502 8 O -0.533 6.533 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.011 3.989 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.144 4.144 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.362 6.362 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.415 0.585 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -25.245 12.623 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 C 0.005 3.995 4 N -0.354 5.354 5 C 0.288 3.712 6 O -0.399 6.399 7 C 0.277 3.723 8 O -0.411 6.411 9 N -0.337 5.337 10 C -0.003 4.003 11 C -0.026 4.026 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.182 4.182 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.281 6.281 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.253 0.747 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.227 -24.939 12.437 27.869 hybrid contribution -0.363 0.450 -0.518 0.776 sum -0.136 -24.489 11.919 27.236 Atomic orbital electron populations 1.22288 0.94037 1.02873 1.03278 1.22384 0.94392 0.91949 0.86416 1.21610 0.98995 0.88828 0.90085 1.45729 1.47361 1.10674 1.31685 1.20452 0.82190 0.82771 0.85758 1.90750 1.34168 1.68374 1.46586 1.19966 0.83144 0.83701 0.85489 1.90729 1.35104 1.68391 1.46877 1.46222 1.45625 1.09877 1.32007 1.21929 0.97560 0.94306 0.86496 1.19352 0.97218 0.87753 0.98311 1.20981 1.26895 0.95807 1.12538 0.92216 1.25004 0.95058 0.97659 0.96576 1.69952 1.33719 1.11924 1.37519 0.86549 0.79570 0.78722 0.82543 1.20108 1.21246 1.20105 1.22967 1.00848 0.97204 0.97148 1.23139 1.00947 0.98546 0.96681 1.23568 0.99922 0.84283 0.95369 1.88986 1.85880 1.20665 1.32597 0.91004 0.91352 0.91734 0.89724 0.90220 0.74714 0.75405 0.91880 0.91883 0.95667 0.95657 0.92728 0.89802 0.89888 0.90258 0.90069 0.92074 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.39 37.16 0.31 -0.90 16 2 C 0.09 0.71 0.86 -90.04 -0.08 0.63 16 3 C 0.13 1.29 4.66 -4.04 -0.02 1.27 16 4 N -0.70 -8.80 5.22 -60.73 -0.32 -9.12 16 5 C 0.51 7.98 7.89 -11.59 -0.09 7.89 16 6 O -0.52 -9.11 16.48 5.50 0.09 -9.02 16 7 C 0.50 8.93 7.89 -11.58 -0.09 8.84 16 8 O -0.53 -10.49 16.48 5.50 0.09 -10.40 16 9 N -0.69 -12.89 5.55 -60.73 -0.34 -13.23 16 10 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 11 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.14 -0.81 6.27 -25.20 -0.16 -0.96 16 21 C -0.16 -0.80 7.15 -24.73 -0.18 -0.97 16 22 C 0.05 0.29 7.66 38.21 0.29 0.59 16 23 O -0.36 -3.52 10.84 -35.23 -0.38 -3.90 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.57 6.53 -51.93 -0.34 0.24 16 26 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.42 5.07 6.41 -40.82 -0.26 4.81 16 30 H 0.41 7.34 7.94 -40.82 -0.32 7.02 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 37 H 0.08 0.36 7.70 -51.93 -0.40 -0.04 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.34 8.11 -51.93 -0.42 -0.09 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -32.23 344.72 -6.86 -39.10 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.34 Total: 4.80 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.58 Total: 5.74 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.08 Total: -47.94 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.20 Total: -23.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.23 -6.86 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324535653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.188 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds