Wall clock time and date at job start Tue Mar 31 2020 05:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.99122 * 2 1 4 4 N 1.46502 * 109.46932 * 306.08118 * 3 2 1 5 5 C 1.34775 * 119.99706 * 179.97438 * 4 3 2 6 6 O 1.21350 * 120.00170 * 0.02562 * 5 4 3 7 7 C 1.49449 * 119.99814 * 179.97438 * 5 4 3 8 8 O 1.21350 * 120.00016 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00179 * 180.02562 * 7 5 4 10 10 C 1.46502 * 120.00072 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.46977 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47145 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99944 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00157 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47141 * 59.99755 * 16 14 12 18 18 H 1.48496 * 109.47216 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46999 * 300.00174 * 16 14 12 20 20 C 1.54106 * 109.87576 * 121.08194 * 2 1 3 21 21 C 1.54807 * 104.18688 * 117.39417 * 20 2 1 22 22 C 1.54994 * 102.09494 * 339.12124 * 21 20 2 23 23 O 1.43739 * 109.87917 * 238.91107 * 2 1 3 24 24 H 1.09002 * 109.47466 * 298.92334 * 1 2 3 25 25 H 1.09003 * 109.46921 * 58.91959 * 1 2 3 26 26 H 1.09002 * 109.47243 * 178.91808 * 1 2 3 27 27 H 1.08997 * 109.47165 * 66.07935 * 3 2 1 28 28 H 1.08997 * 109.46830 * 186.07926 * 3 2 1 29 29 H 0.97003 * 119.99835 * 0.02562 * 4 3 2 30 30 H 0.96995 * 119.99860 * 0.02562 * 9 7 5 31 31 H 1.08997 * 109.47046 * 299.99980 * 10 9 7 32 32 H 1.09003 * 109.46883 * 60.00058 * 10 9 7 33 33 H 1.09006 * 109.46967 * 299.99477 * 11 10 9 34 34 H 1.08995 * 109.47328 * 60.00095 * 11 10 9 35 35 H 0.96996 * 119.99930 * 180.02562 * 15 14 12 36 36 H 1.08997 * 110.48714 * 236.07079 * 20 2 1 37 37 H 1.09000 * 110.48945 * 358.71950 * 20 2 1 38 38 H 1.09005 * 110.90346 * 97.31858 * 21 20 2 39 39 H 1.09000 * 110.90998 * 220.91594 * 21 20 2 40 40 H 1.08998 * 110.61564 * 278.52047 * 22 21 20 41 41 H 1.08997 * 110.62119 * 155.52521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 7 1.4555 2.1748 -1.1163 5 6 1.7719 3.4697 -1.3150 6 8 2.5519 4.0251 -0.5696 7 6 1.1628 4.2214 -2.4541 8 8 0.3831 3.6659 -3.1998 9 7 1.4795 5.5163 -2.6532 10 6 0.8820 6.2532 -3.7695 11 6 1.4055 7.6908 -3.7699 12 6 0.7904 8.4492 -4.9178 13 1 0.0959 7.9550 -5.5810 14 6 1.1143 9.7738 -5.1214 15 7 1.9597 10.3757 -4.3135 16 14 0.3524 10.7135 -6.5447 17 1 -1.1251 10.7241 -6.3964 18 1 0.8605 12.1089 -6.5450 19 1 0.7167 10.0543 -7.8245 20 6 2.0539 -0.7482 1.2412 21 6 2.8323 -1.9524 0.6578 22 6 2.2281 -2.0714 -0.7646 23 8 2.0187 -0.6980 -1.1576 24 1 -0.3634 0.4970 0.8995 25 1 -0.3633 0.5305 -0.8802 26 1 -0.3634 -1.0275 -0.0194 27 1 1.7857 1.9217 0.9394 28 1 3.1375 1.4299 -0.1088 29 1 0.8317 1.7309 -1.7119 30 1 2.1030 5.9602 -2.0574 31 1 1.1493 5.7693 -4.7089 32 1 -0.2026 6.2611 -3.6606 33 1 1.1384 8.1750 -2.8305 34 1 2.4899 7.6826 -3.8790 35 1 2.1872 11.3077 -4.4565 36 1 2.7196 -0.1078 1.8199 37 1 1.2236 -1.0931 1.8575 38 1 3.9002 -1.7390 0.6101 39 1 2.6431 -2.8558 1.2377 40 1 1.2814 -2.6108 -0.7355 41 1 2.9295 -2.5613 -1.4399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324535653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:34 Heat of formation + Delta-G solvation = -155.442755 kcal Electronic energy + Delta-G solvation = -22028.663285 eV Core-core repulsion = 18521.110999 eV Total energy + Delta-G solvation = -3507.552286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81516 -40.82956 -39.53548 -36.97893 -36.10921 -34.82164 -33.36683 -32.22179 -31.69647 -28.55338 -27.48233 -26.57318 -24.57579 -22.90444 -22.56736 -21.45239 -21.18703 -19.68280 -18.58404 -17.90232 -17.37771 -17.21448 -16.81536 -16.49638 -16.42315 -16.29478 -15.72384 -15.58979 -14.89690 -14.73549 -14.66300 -14.30235 -14.01952 -13.66977 -13.45029 -13.26913 -12.92948 -12.84175 -12.76654 -12.61007 -12.54538 -12.27564 -12.02923 -11.94274 -11.68919 -11.56509 -11.45917 -10.72788 -10.66603 -10.61142 -10.38171 -10.20766 -8.23357 -6.34813 0.30198 1.30138 1.43574 1.45747 1.53920 2.10173 2.39841 2.63031 2.85766 3.11381 3.42396 3.47589 3.69122 3.80147 4.04362 4.13456 4.37964 4.38395 4.44387 4.47869 4.56515 4.66625 4.77662 4.80398 4.85329 4.91840 4.97616 5.04639 5.06963 5.13006 5.21973 5.26687 5.41653 5.54409 5.74911 5.89301 5.98226 6.12637 6.32876 6.67777 6.78967 6.90927 7.34643 8.88533 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.049209 B = 0.002487 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.865928 B =11253.840520 C =11495.495960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 C 0.123 3.877 4 N -0.683 5.683 5 C 0.513 3.487 6 O -0.542 6.542 7 C 0.500 3.500 8 O -0.550 6.550 9 N -0.688 5.688 10 C 0.137 3.863 11 C 0.019 3.981 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.969 3.031 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.141 4.141 21 C -0.151 4.151 22 C 0.037 3.963 23 O -0.393 6.393 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.418 0.582 30 H 0.415 0.585 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -26.675 13.026 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 C 0.000 4.000 4 N -0.337 5.337 5 C 0.293 3.707 6 O -0.420 6.420 7 C 0.280 3.720 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.019 4.019 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.179 4.179 21 C -0.188 4.188 22 C -0.039 4.039 23 O -0.313 6.313 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.251 0.749 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.476 -26.422 12.854 29.387 hybrid contribution -0.131 0.803 -0.616 1.021 sum -0.607 -25.619 12.238 28.399 Atomic orbital electron populations 1.22295 0.93444 1.03593 1.03054 1.22444 0.94779 0.90622 0.87234 1.21886 0.98558 0.90153 0.89369 1.45769 1.46432 1.09497 1.31975 1.19956 0.82164 0.83595 0.84952 1.90749 1.35199 1.68955 1.47078 1.20339 0.82593 0.83220 0.85823 1.90716 1.35812 1.68648 1.47667 1.46062 1.45867 1.10378 1.31571 1.21490 0.97317 0.92365 0.87346 1.19172 0.95991 0.89814 0.96873 1.21423 1.27145 0.96546 1.13323 0.91698 1.25932 0.95449 0.98728 0.99332 1.70074 1.35011 1.12358 1.39335 0.85443 0.78942 0.77203 0.79126 1.19132 1.20818 1.19215 1.22994 1.01582 0.97119 0.96171 1.23135 1.00530 0.99209 0.95958 1.23768 1.00773 0.82988 0.96346 1.88951 1.86160 1.22345 1.33814 0.89876 0.92941 0.90519 0.88507 0.90927 0.74382 0.74896 0.92116 0.91930 0.97343 0.97447 0.92545 0.89375 0.88119 0.90657 0.88038 0.91007 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.39 71.98 0.60 -1.50 16 2 C 0.09 1.27 0.86 -10.42 -0.01 1.27 16 3 C 0.12 2.32 4.66 86.38 0.40 2.72 16 4 N -0.68 -16.71 5.22 -464.41 -2.43 -19.13 16 5 C 0.51 15.94 7.89 87.27 0.69 16.62 16 6 O -0.54 -18.69 16.48 -3.25 -0.05 -18.74 16 7 C 0.50 17.85 7.89 87.27 0.69 18.54 16 8 O -0.55 -21.44 16.48 -3.25 -0.05 -21.49 16 9 N -0.69 -26.01 5.55 -464.41 -2.58 -28.58 16 10 C 0.14 5.91 5.61 86.38 0.48 6.40 16 11 C 0.02 0.98 5.09 29.85 0.15 1.13 16 12 C -0.55 -30.49 9.11 25.60 0.23 -30.26 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 0.24 5.46 84.65 0.46 0.71 16 15 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 16 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 C -0.14 -1.23 6.27 31.59 0.20 -1.03 16 21 C -0.15 -1.20 7.15 31.89 0.23 -0.97 16 22 C 0.04 0.42 7.66 72.66 0.56 0.98 16 23 O -0.39 -7.21 10.84 -148.98 -1.61 -8.83 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.83 6.53 -2.39 -0.02 0.81 16 26 H 0.08 0.78 8.11 -2.39 -0.02 0.76 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.42 9.96 6.41 -92.71 -0.59 9.37 16 30 H 0.41 15.07 7.94 -92.71 -0.74 14.33 16 31 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.09 0.71 7.70 -2.39 -0.02 0.69 16 37 H 0.10 0.55 7.70 -2.39 -0.02 0.53 16 38 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.07 0.64 8.11 -2.39 -0.02 0.62 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -68.30 344.72 -0.01 -68.32 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.29 Total: 23.16 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 4.69 Total: 14.60 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.72 Total: -102.75 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.72 Total: -49.06 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.30 -0.01 -68.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324535653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.127 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds