Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47122 * 269.99491 * 3 2 1 5 5 H 1.48496 * 109.47408 * 30.00088 * 3 2 1 6 6 H 1.48502 * 109.47250 * 149.99954 * 3 2 1 7 7 C 1.37882 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47524 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47765 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47483 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00003 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99874 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99917 * 174.97059 * 15 13 12 17 17 C 1.50699 * 110.45849 * 64.42717 * 16 15 13 18 18 N 1.34778 * 119.99636 * 35.02128 * 17 16 15 19 19 O 1.21277 * 120.00120 * 214.75079 * 17 16 15 20 20 C 1.54511 * 110.51051 * 187.03460 * 16 15 13 21 21 C 1.54482 * 104.06191 * 118.77940 * 20 16 15 22 22 O 1.44418 * 104.80282 * 23.98054 * 21 20 16 23 23 C 1.44789 * 105.29522 * 319.44809 * 22 21 20 24 24 H 0.97001 * 120.00373 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47341 * 59.99744 * 9 7 2 26 26 H 1.09004 * 109.47077 * 300.00080 * 9 7 2 27 27 H 1.08998 * 109.47654 * 59.99775 * 10 9 7 28 28 H 1.09004 * 109.47085 * 299.99996 * 10 9 7 29 29 H 1.09003 * 109.47068 * 59.99659 * 11 10 9 30 30 H 1.09004 * 109.47068 * 300.00168 * 11 10 9 31 31 H 1.09003 * 109.46954 * 59.99775 * 12 11 10 32 32 H 1.09006 * 109.46676 * 300.00031 * 12 11 10 33 33 H 0.97001 * 120.00438 * 354.96852 * 15 13 12 34 34 H 0.96999 * 119.99533 * 184.74838 * 18 17 16 35 35 H 0.96999 * 120.00455 * 4.75385 * 18 17 16 36 36 H 1.09002 * 110.50970 * 237.42692 * 20 16 15 37 37 H 1.08999 * 110.51154 * 0.02562 * 20 16 15 38 38 H 1.08997 * 110.36844 * 142.80641 * 21 20 16 39 39 H 1.08999 * 110.37368 * 265.03492 * 21 20 16 40 40 H 1.08999 * 110.42758 * 281.78204 * 23 22 21 41 41 H 1.09005 * 110.48641 * 159.32654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0031 14 8 0.5082 -7.4551 0.0031 15 7 2.3949 -8.6222 0.0042 16 6 1.6666 -9.8886 0.1154 17 6 0.7822 -10.0949 -1.0872 18 7 1.1852 -9.6697 -2.3010 19 8 -0.2901 -10.6480 -0.9637 20 6 2.6522 -11.0682 0.2714 21 6 2.2955 -11.6761 1.6460 22 8 0.9233 -11.2888 1.8759 23 6 0.8305 -9.9197 1.4140 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 0.8540 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8922 31 1 3.1011 -6.0918 0.8931 32 1 3.1012 -6.0927 -0.8869 33 1 3.3622 -8.6239 -0.0688 34 1 0.5883 -9.7399 -3.0623 35 1 2.0722 -9.2935 -2.4132 36 1 2.4999 -11.8006 -0.5214 37 1 3.6814 -10.7091 0.2662 38 1 2.3830 -12.7621 1.6147 39 1 2.9423 -11.2662 2.4216 40 1 1.2526 -9.2392 2.1535 41 1 -0.2065 -9.6575 1.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327128017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -137.492146 kcal Electronic energy + Delta-G solvation = -22572.687245 eV Core-core repulsion = 19065.913356 eV Total energy + Delta-G solvation = -3506.773890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35513 -39.19211 -38.42585 -35.32557 -34.86294 -33.58145 -32.69120 -31.46711 -29.98773 -28.82351 -25.69342 -24.29087 -23.02571 -22.61107 -20.68119 -20.04383 -19.94822 -18.13073 -17.57374 -17.20434 -16.46794 -16.16926 -15.95147 -15.67877 -15.35684 -14.81709 -14.63795 -14.41779 -14.20858 -13.75613 -13.57258 -12.87046 -12.62134 -12.34226 -12.11411 -11.98775 -11.78815 -11.68083 -11.60306 -11.01988 -10.63149 -10.59398 -10.53781 -10.46674 -10.16147 -10.00588 -9.90250 -9.66392 -9.39915 -9.26675 -9.01758 -8.32916 -5.97407 -4.00294 2.23444 2.44196 2.71721 3.15419 3.32140 3.38460 3.41239 3.66095 3.88878 4.23220 4.44122 4.46746 4.59825 4.64565 4.74498 5.03334 5.17807 5.21785 5.24585 5.27558 5.33314 5.37965 5.69363 5.72271 5.87636 6.05760 6.22065 6.40057 6.47278 6.52284 6.77231 6.95022 7.01046 7.11831 7.17456 7.71167 7.86514 7.97279 8.02157 8.03766 8.44936 9.07462 9.63565 11.13878 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035244 B = 0.002744 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.262364 B =10203.127575 C =10362.092667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.509 3.491 14 O -0.515 6.515 15 N -0.731 5.731 16 C 0.124 3.876 17 C 0.532 3.468 18 N -0.848 5.848 19 O -0.524 6.524 20 C -0.149 4.149 21 C 0.044 3.956 22 O -0.361 6.361 23 C 0.063 3.937 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.405 0.595 34 H 0.404 0.596 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.021 -24.111 -1.216 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.176 4.176 13 C 0.297 3.703 14 O -0.388 6.388 15 N -0.390 5.390 16 C 0.034 3.966 17 C 0.314 3.686 18 N -0.411 5.411 19 O -0.398 6.398 20 C -0.187 4.187 21 C -0.033 4.033 22 O -0.278 6.278 23 C -0.015 4.015 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.241 0.759 34 H 0.235 0.765 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.104 -24.496 -0.823 26.146 hybrid contribution 1.412 1.331 -0.627 2.039 sum 10.516 -23.165 -1.450 25.481 Atomic orbital electron populations 1.69968 1.06062 1.26564 1.50798 1.25043 0.94835 0.99248 0.95427 0.86613 0.79824 0.83605 0.78047 1.20712 1.21234 1.19915 1.21271 0.92956 0.91192 1.50567 0.92764 1.19091 0.94040 0.91262 0.97330 1.21644 0.99080 0.93945 1.00069 1.21474 0.96998 0.92670 1.03099 1.21810 1.00122 0.91433 1.04219 1.21344 0.88746 0.85472 0.74752 1.90781 1.14010 1.87231 1.46758 1.46347 1.10499 1.04276 1.77859 1.21904 0.93256 0.85723 0.95764 1.20239 0.86473 0.77460 0.84449 1.43693 1.20520 1.66249 1.10648 1.90781 1.22242 1.41576 1.85217 1.23207 0.98943 0.96153 1.00447 1.23409 0.84514 1.01106 0.94248 1.89304 1.26656 1.27887 1.83997 1.23687 1.02655 0.84057 0.91105 0.93000 0.96620 0.96581 0.93441 0.93479 0.91763 0.91684 0.88794 0.88972 0.75864 0.76535 0.77292 0.89166 0.88576 0.88408 0.91548 0.90892 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.15 5.15 -26.74 -0.14 -2.29 16 11 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.14 -1.52 5.70 -27.88 -0.16 -1.68 16 13 C 0.51 5.93 7.27 -10.99 -0.08 5.85 16 14 O -0.51 -8.48 14.31 5.56 0.08 -8.40 16 15 N -0.73 -5.50 4.45 -47.22 -0.21 -5.72 16 16 C 0.12 1.17 0.94 -131.40 -0.12 1.05 16 17 C 0.53 6.42 5.66 -10.99 -0.06 6.36 16 18 N -0.85 -7.19 8.75 31.22 0.27 -6.92 16 19 O -0.52 -8.72 16.74 5.56 0.09 -8.63 16 20 C -0.15 -0.87 6.50 -25.16 -0.16 -1.03 16 21 C 0.04 0.32 7.63 37.94 0.29 0.61 16 22 O -0.36 -4.34 11.66 -35.23 -0.41 -4.75 16 23 C 0.06 0.77 5.37 37.93 0.20 0.97 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.41 1.48 8.16 -40.82 -0.33 1.15 16 34 H 0.40 3.21 8.93 -40.82 -0.36 2.85 16 35 H 0.40 2.25 8.32 -40.82 -0.34 1.91 16 36 H 0.09 0.52 7.73 -51.93 -0.40 0.12 16 37 H 0.10 0.24 7.54 -51.93 -0.39 -0.15 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 41 H 0.11 1.75 7.19 -51.93 -0.37 1.37 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -37.56 341.60 -6.60 -44.16 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.38 Total: 0.32 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.90 Total: -5.27 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.80 Total: -39.24 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.24 Total: -21.78 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.56 -6.60 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327128017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.332 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds