Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47122 * 269.99491 * 3 2 1 5 5 H 1.48496 * 109.47408 * 30.00088 * 3 2 1 6 6 H 1.48502 * 109.47250 * 149.99954 * 3 2 1 7 7 C 1.37882 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47524 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47765 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47483 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00003 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99874 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99917 * 174.97059 * 15 13 12 17 17 C 1.50699 * 110.45849 * 64.42717 * 16 15 13 18 18 N 1.34778 * 119.99636 * 35.02128 * 17 16 15 19 19 O 1.21277 * 120.00120 * 214.75079 * 17 16 15 20 20 C 1.54511 * 110.51051 * 187.03460 * 16 15 13 21 21 C 1.54482 * 104.06191 * 118.77940 * 20 16 15 22 22 O 1.44418 * 104.80282 * 23.98054 * 21 20 16 23 23 C 1.44789 * 105.29522 * 319.44809 * 22 21 20 24 24 H 0.97001 * 120.00373 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47341 * 59.99744 * 9 7 2 26 26 H 1.09004 * 109.47077 * 300.00080 * 9 7 2 27 27 H 1.08998 * 109.47654 * 59.99775 * 10 9 7 28 28 H 1.09004 * 109.47085 * 299.99996 * 10 9 7 29 29 H 1.09003 * 109.47068 * 59.99659 * 11 10 9 30 30 H 1.09004 * 109.47068 * 300.00168 * 11 10 9 31 31 H 1.09003 * 109.46954 * 59.99775 * 12 11 10 32 32 H 1.09006 * 109.46676 * 300.00031 * 12 11 10 33 33 H 0.97001 * 120.00438 * 354.96852 * 15 13 12 34 34 H 0.96999 * 119.99533 * 184.74838 * 18 17 16 35 35 H 0.96999 * 120.00455 * 4.75385 * 18 17 16 36 36 H 1.09002 * 110.50970 * 237.42692 * 20 16 15 37 37 H 1.08999 * 110.51154 * 0.02562 * 20 16 15 38 38 H 1.08997 * 110.36844 * 142.80641 * 21 20 16 39 39 H 1.08999 * 110.37368 * 265.03492 * 21 20 16 40 40 H 1.08999 * 110.42758 * 281.78204 * 23 22 21 41 41 H 1.09005 * 110.48641 * 159.32654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0031 13 6 1.7210 -7.4551 0.0031 14 8 0.5082 -7.4551 0.0031 15 7 2.3949 -8.6222 0.0042 16 6 1.6666 -9.8886 0.1154 17 6 0.7822 -10.0949 -1.0872 18 7 1.1852 -9.6697 -2.3010 19 8 -0.2901 -10.6480 -0.9637 20 6 2.6522 -11.0682 0.2714 21 6 2.2955 -11.6761 1.6460 22 8 0.9233 -11.2888 1.8759 23 6 0.8305 -9.9197 1.4140 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 0.8540 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8922 31 1 3.1011 -6.0918 0.8931 32 1 3.1012 -6.0927 -0.8869 33 1 3.3622 -8.6239 -0.0688 34 1 0.5883 -9.7399 -3.0623 35 1 2.0722 -9.2935 -2.4132 36 1 2.4999 -11.8006 -0.5214 37 1 3.6814 -10.7091 0.2662 38 1 2.3830 -12.7621 1.6147 39 1 2.9423 -11.2662 2.4216 40 1 1.2526 -9.2392 2.1535 41 1 -0.2065 -9.6575 1.2039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327128017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -169.621425 kcal Electronic energy + Delta-G solvation = -22574.080475 eV Core-core repulsion = 19065.913356 eV Total energy + Delta-G solvation = -3508.167120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19065 -40.17170 -39.29059 -36.68979 -36.03544 -34.61724 -34.41968 -32.34856 -31.29702 -29.82762 -27.37632 -25.23647 -24.22320 -23.62906 -21.96004 -21.37798 -20.82180 -18.96221 -18.44482 -18.31496 -18.07136 -17.25831 -16.89112 -16.55856 -16.48090 -16.22781 -15.68056 -15.54461 -15.41509 -14.83269 -14.55220 -14.30977 -13.73763 -13.66053 -13.51293 -13.21731 -12.87662 -12.80434 -12.72554 -12.33856 -12.22038 -12.13505 -12.10178 -11.56553 -11.34750 -11.34544 -11.16497 -10.89899 -10.80953 -10.75982 -10.54592 -10.25495 -8.18207 -6.30483 1.36057 1.41028 1.43138 1.53679 1.54197 1.91643 2.38412 2.42383 2.96750 3.14807 3.23577 3.50723 3.75182 3.84452 4.04810 4.08476 4.15407 4.18863 4.39738 4.59938 4.68818 4.72117 4.72939 4.78536 4.87549 4.89017 4.89875 5.13796 5.21664 5.35586 5.41961 5.59128 5.69835 5.75637 5.79994 5.89690 6.25827 6.29529 6.47032 6.88970 7.17692 7.21349 7.39532 8.94032 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035244 B = 0.002744 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.262364 B =10203.127575 C =10362.092667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.123 4.123 13 C 0.511 3.489 14 O -0.571 6.571 15 N -0.700 5.700 16 C 0.128 3.872 17 C 0.522 3.478 18 N -0.830 5.830 19 O -0.583 6.583 20 C -0.137 4.137 21 C 0.033 3.967 22 O -0.394 6.394 23 C 0.062 3.938 24 H 0.262 0.738 25 H -0.017 1.017 26 H -0.019 1.019 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.431 0.569 34 H 0.406 0.594 35 H 0.416 0.584 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.636 -24.485 -1.540 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.163 4.163 13 C 0.300 3.700 14 O -0.449 6.449 15 N -0.360 5.360 16 C 0.037 3.963 17 C 0.305 3.695 18 N -0.394 5.394 19 O -0.461 6.461 20 C -0.174 4.174 21 C -0.043 4.043 22 O -0.312 6.312 23 C -0.016 4.016 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.273 0.727 34 H 0.238 0.762 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.838 -24.883 -1.175 28.497 hybrid contribution -0.065 1.415 -0.530 1.513 sum 13.773 -23.468 -1.705 27.265 Atomic orbital electron populations 1.70133 1.08149 1.27723 1.51998 1.26105 0.95742 1.03802 0.94856 0.85392 0.78727 0.78072 0.78518 1.19707 1.21175 1.18121 1.21777 0.93817 0.92183 1.50050 0.91358 1.19067 0.94763 0.94016 0.94126 1.21435 0.97710 0.92559 1.01512 1.21261 0.97622 0.93916 1.00870 1.21682 0.98724 0.88366 1.07495 1.21461 0.87970 0.86684 0.73931 1.90797 1.16601 1.87989 1.49486 1.45965 1.11537 1.02475 1.76052 1.21772 0.93688 0.87606 0.93198 1.20780 0.86080 0.76745 0.85900 1.43586 1.21262 1.64756 1.09774 1.90753 1.24761 1.44421 1.86160 1.23274 1.00139 0.94335 0.99684 1.23780 0.82421 1.02410 0.95676 1.89265 1.30026 1.27612 1.84311 1.23502 1.00682 0.84593 0.92835 0.92917 0.99904 1.00011 0.91955 0.91715 0.94026 0.94253 0.85726 0.85274 0.72745 0.76243 0.75316 0.88784 0.83886 0.86915 0.89327 0.90273 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.29 21.45 0.28 -58.70 16 2 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.02 0.94 4.97 29.84 0.15 1.08 16 10 C -0.09 -3.61 5.15 30.59 0.16 -3.45 16 11 C -0.10 -3.25 4.50 30.59 0.14 -3.11 16 12 C -0.12 -2.33 5.70 29.85 0.17 -2.16 16 13 C 0.51 10.96 7.27 87.66 0.64 11.60 16 14 O -0.57 -19.31 14.31 -3.03 -0.04 -19.36 16 15 N -0.70 -8.21 4.45 -421.70 -1.88 -10.09 16 16 C 0.13 2.21 0.94 3.87 0.00 2.22 16 17 C 0.52 12.53 5.66 87.66 0.50 13.02 16 18 N -0.83 -13.04 8.75 -173.54 -1.52 -14.56 16 19 O -0.58 -20.49 16.74 -3.02 -0.05 -20.54 16 20 C -0.14 -1.09 6.50 31.61 0.21 -0.89 16 21 C 0.03 0.39 7.63 72.49 0.55 0.94 16 22 O -0.39 -9.52 11.66 -148.98 -1.74 -11.26 16 23 C 0.06 1.55 5.37 72.48 0.39 1.94 16 24 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.04 1.47 8.10 -2.38 -0.02 1.45 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.43 0.68 8.16 -92.71 -0.76 -0.08 16 34 H 0.41 6.23 8.93 -92.71 -0.83 5.40 16 35 H 0.42 3.48 8.32 -92.71 -0.77 2.71 16 36 H 0.09 0.76 7.73 -2.39 -0.02 0.74 16 37 H 0.14 -0.19 7.54 -2.39 -0.02 -0.21 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 1.77 8.02 -2.39 -0.02 1.76 16 41 H 0.07 2.29 7.19 -2.38 -0.02 2.27 16 Total: -1.00 -89.82 341.60 -0.62 -90.44 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -1.30 Total: 7.18 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 3.59 Total: -9.33 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -3.11 Total: -83.36 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.83 Total: -51.16 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -89.82 -0.62 -90.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327128017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.180 kcal (2) G-P(sol) polarization free energy of solvation -89.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds