Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47409 * 299.99656 * 3 2 1 6 6 H 1.48508 * 109.47055 * 59.99797 * 3 2 1 7 7 C 1.37880 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99533 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.64060 * 56.85614 * 9 7 2 11 11 C 1.55154 * 110.71481 * 179.97438 * 9 7 2 12 12 C 1.54918 * 101.57991 * 154.03988 * 11 9 7 13 13 N 1.47426 * 104.82958 * 322.99196 * 12 11 9 14 14 C 1.34774 * 125.64744 * 204.08960 * 13 12 11 15 15 O 1.21580 * 120.00173 * 180.02562 * 14 13 12 16 16 N 1.34780 * 120.00000 * 0.02562 * 14 13 12 17 17 C 1.46500 * 120.00244 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47083 * 180.02562 * 17 16 14 19 19 H 1.09004 * 110.98835 * 309.19700 * 18 17 16 20 20 C 1.55300 * 111.12401 * 185.00358 * 18 17 16 21 21 C 1.54377 * 102.25502 * 207.94816 * 20 18 17 22 22 O 1.43245 * 107.58529 * 21.35358 * 21 20 18 23 23 C 1.43641 * 109.97106 * 1.71442 * 22 21 20 24 24 C 1.47021 * 108.70669 * 24.35444 * 13 12 11 25 25 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00682 * 303.14158 * 10 9 7 27 27 H 1.09006 * 111.00520 * 35.97490 * 11 9 7 28 28 H 1.08994 * 111.03849 * 272.12802 * 11 9 7 29 29 H 1.08998 * 110.36850 * 204.15117 * 12 11 9 30 30 H 1.08996 * 110.35962 * 81.82724 * 12 11 9 31 31 H 0.97001 * 119.99800 * 0.02562 * 16 14 13 32 32 H 1.08995 * 109.46747 * 60.00733 * 17 16 14 33 33 H 1.08998 * 109.47364 * 300.00417 * 17 16 14 34 34 H 1.09006 * 110.85287 * 89.75441 * 20 18 17 35 35 H 1.09007 * 110.84948 * 326.14010 * 20 18 17 36 36 H 1.09000 * 109.83189 * 261.84669 * 21 20 18 37 37 H 1.08997 * 109.83895 * 140.86726 * 21 20 18 38 38 H 1.08997 * 110.30942 * 94.48681 * 23 22 21 39 39 H 1.08999 * 110.30828 * 216.65652 * 23 22 21 40 40 H 1.09002 * 109.88243 * 118.12496 * 24 13 12 41 41 H 1.09000 * 109.88120 * 239.29734 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.3664 -2.5700 -1.1194 11 6 2.2333 -3.7001 0.0005 12 6 1.3740 -4.8048 0.6649 13 7 0.5905 -4.1031 1.6980 14 6 0.0655 -4.6671 2.8037 15 8 -0.5661 -3.9890 3.5907 16 7 0.2408 -5.9830 3.0371 17 6 -0.3294 -6.5960 4.2394 18 6 0.0133 -8.0869 4.2632 19 1 -0.2463 -8.5624 3.3173 20 6 -0.6776 -8.8011 5.4567 21 6 0.2879 -9.9714 5.7417 22 8 1.5636 -9.6241 5.1905 23 6 1.5065 -8.3112 4.6107 24 6 0.4713 -2.6876 1.3191 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2682 -1.8419 -1.1663 27 1 3.1182 -3.4811 0.5983 28 1 2.5103 -3.9791 -1.0160 29 1 2.0138 -5.5599 1.1215 30 1 0.7106 -5.2619 -0.0692 31 1 0.7450 -6.5239 2.4095 32 1 -1.4123 -6.4719 4.2317 33 1 0.0853 -6.1140 5.1246 34 1 -1.6620 -9.1713 5.1701 35 1 -0.7475 -8.1371 6.3183 36 1 -0.0837 -10.8808 5.2695 37 1 0.3787 -10.1225 6.8174 38 1 1.8437 -7.5649 5.3301 39 1 2.1155 -8.2695 3.7076 40 1 -0.5776 -2.4304 1.1717 41 1 0.9039 -2.0580 2.0966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328119506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -125.942227 kcal Electronic energy + Delta-G solvation = -22986.771921 eV Core-core repulsion = 19480.498874 eV Total energy + Delta-G solvation = -3506.273047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04364 -39.36260 -37.43917 -35.03324 -34.29098 -32.27374 -32.16395 -30.16924 -29.46319 -27.83751 -26.04733 -24.58250 -22.81647 -22.31500 -21.10285 -19.69540 -19.40346 -17.67872 -17.11408 -17.10596 -16.08284 -15.63087 -15.47671 -15.14105 -14.91076 -14.35666 -14.10843 -13.93838 -13.71741 -13.15070 -12.90229 -12.87943 -12.52343 -12.21897 -11.94226 -11.70694 -11.59207 -11.45708 -11.17427 -11.10280 -11.07111 -10.81151 -10.66090 -10.48211 -10.17125 -9.81492 -9.66174 -9.34909 -8.90442 -8.67746 -8.32109 -7.78828 -6.29810 -4.38259 3.03374 3.20417 3.28967 3.32344 3.57894 3.69860 4.08817 4.25771 4.37609 4.47744 4.58419 4.83942 4.92851 4.97619 5.02469 5.32283 5.36241 5.40442 5.51020 5.52984 5.60893 5.68588 5.71400 5.80280 5.90916 6.01128 6.09389 6.49411 6.66840 6.69193 6.71212 6.86479 6.96732 7.23724 7.31425 7.59274 7.73475 8.01047 8.49016 8.65594 9.08366 9.30734 9.43288 10.78052 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003352 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.981808 B = 8350.029613 C = 8502.392016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.629 5.629 14 C 0.715 3.285 15 O -0.597 6.597 16 N -0.753 5.753 17 C 0.153 3.847 18 C -0.136 4.136 19 H 0.094 0.906 20 C -0.147 4.147 21 C 0.051 3.949 22 O -0.386 6.386 23 C 0.055 3.945 24 C 0.120 3.880 25 H 0.270 0.730 26 H 0.386 0.614 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -16.423 6.760 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.366 5.366 14 C 0.417 3.583 15 O -0.476 6.476 16 N -0.411 5.411 17 C 0.028 3.972 18 C -0.155 4.155 19 H 0.112 0.888 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.305 6.305 23 C -0.021 4.021 24 C -0.002 4.002 25 H 0.081 0.919 26 H 0.238 0.762 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.208 -16.470 7.301 18.017 hybrid contribution 0.036 1.285 -0.123 1.291 sum 0.244 -15.185 7.178 16.798 Atomic orbital electron populations 1.69586 1.06024 1.27887 1.49971 1.25086 0.95059 0.99837 0.93354 0.86332 0.80038 0.82671 0.77763 1.19581 1.20734 1.20750 1.21558 0.93736 0.90087 1.52082 0.91434 1.19496 0.85877 0.92076 0.81782 1.86064 1.51453 1.53439 1.48744 1.22734 0.97651 0.94872 1.00181 1.22241 0.93817 0.95623 0.90331 1.47944 1.55251 1.12311 1.21092 1.15503 0.80053 0.81297 0.81452 1.90887 1.46673 1.62100 1.47941 1.45122 1.60821 1.08495 1.26679 1.20974 0.98931 0.89517 0.87761 1.23139 0.96084 0.96162 1.00145 0.88760 1.23108 0.99784 0.97356 0.98313 1.23113 0.83278 0.97470 0.98651 1.88405 1.31764 1.33511 1.76866 1.23500 0.95624 0.84733 0.98229 1.22906 1.01409 0.76711 0.99165 0.91946 0.76174 0.90560 0.90544 0.92653 0.91990 0.77312 0.91330 0.91472 0.89541 0.89890 0.91254 0.91365 0.91607 0.89544 0.92032 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.79 10.97 55.43 0.61 -23.18 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -13.92 8.12 -34.44 -0.28 -14.20 16 8 H 0.07 1.72 7.76 -52.49 -0.41 1.32 16 9 C 0.25 5.96 0.86 -89.93 -0.08 5.88 16 10 O -0.59 -14.74 13.07 -35.23 -0.46 -15.20 16 11 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 12 C 0.10 1.76 6.57 -2.52 -0.02 1.74 16 13 N -0.63 -12.86 3.33 -176.23 -0.59 -13.45 16 14 C 0.72 14.22 8.49 -86.92 -0.74 13.48 16 15 O -0.60 -14.29 16.67 5.29 0.09 -14.20 16 16 N -0.75 -10.70 5.47 -65.23 -0.36 -11.05 16 17 C 0.15 1.80 5.14 -4.04 -0.02 1.78 16 18 C -0.14 -1.18 3.10 -88.37 -0.27 -1.45 16 19 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.15 -1.06 6.50 -24.79 -0.16 -1.22 16 21 C 0.05 0.40 7.79 37.88 0.30 0.70 16 22 O -0.39 -4.13 11.36 -35.23 -0.40 -4.53 16 23 C 0.06 0.52 7.22 38.18 0.28 0.80 16 24 C 0.12 2.92 5.54 -3.06 -0.02 2.90 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.39 10.05 6.98 45.56 0.32 10.37 16 27 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.39 4.61 6.95 -40.82 -0.28 4.32 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.64 8.07 -51.93 -0.42 1.22 16 41 H 0.06 1.68 7.82 -51.93 -0.41 1.27 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -30.83 332.79 -8.12 -38.95 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.75 Total: 12.60 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.26 Total: 9.70 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.33 Total: -47.68 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.77 Total: -33.93 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.83 -8.12 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328119506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.992 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds