Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47409 * 299.99656 * 3 2 1 6 6 H 1.48508 * 109.47055 * 59.99797 * 3 2 1 7 7 C 1.37880 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99533 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.64060 * 56.85614 * 9 7 2 11 11 C 1.55154 * 110.71481 * 179.97438 * 9 7 2 12 12 C 1.54918 * 101.57991 * 154.03988 * 11 9 7 13 13 N 1.47426 * 104.82958 * 322.99196 * 12 11 9 14 14 C 1.34774 * 125.64744 * 204.08960 * 13 12 11 15 15 O 1.21580 * 120.00173 * 180.02562 * 14 13 12 16 16 N 1.34780 * 120.00000 * 0.02562 * 14 13 12 17 17 C 1.46500 * 120.00244 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47083 * 180.02562 * 17 16 14 19 19 H 1.09004 * 110.98835 * 309.19700 * 18 17 16 20 20 C 1.55300 * 111.12401 * 185.00358 * 18 17 16 21 21 C 1.54377 * 102.25502 * 207.94816 * 20 18 17 22 22 O 1.43245 * 107.58529 * 21.35358 * 21 20 18 23 23 C 1.43641 * 109.97106 * 1.71442 * 22 21 20 24 24 C 1.47021 * 108.70669 * 24.35444 * 13 12 11 25 25 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 26 26 H 0.96695 * 114.00682 * 303.14158 * 10 9 7 27 27 H 1.09006 * 111.00520 * 35.97490 * 11 9 7 28 28 H 1.08994 * 111.03849 * 272.12802 * 11 9 7 29 29 H 1.08998 * 110.36850 * 204.15117 * 12 11 9 30 30 H 1.08996 * 110.35962 * 81.82724 * 12 11 9 31 31 H 0.97001 * 119.99800 * 0.02562 * 16 14 13 32 32 H 1.08995 * 109.46747 * 60.00733 * 17 16 14 33 33 H 1.08998 * 109.47364 * 300.00417 * 17 16 14 34 34 H 1.09006 * 110.85287 * 89.75441 * 20 18 17 35 35 H 1.09007 * 110.84948 * 326.14010 * 20 18 17 36 36 H 1.09000 * 109.83189 * 261.84669 * 21 20 18 37 37 H 1.08997 * 109.83895 * 140.86726 * 21 20 18 38 38 H 1.08997 * 110.30942 * 94.48681 * 23 22 21 39 39 H 1.08999 * 110.30828 * 216.65652 * 23 22 21 40 40 H 1.09002 * 109.88243 * 118.12496 * 24 13 12 41 41 H 1.09000 * 109.88120 * 239.29734 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.3664 -2.5700 -1.1194 11 6 2.2333 -3.7001 0.0005 12 6 1.3740 -4.8048 0.6649 13 7 0.5905 -4.1031 1.6980 14 6 0.0655 -4.6671 2.8037 15 8 -0.5661 -3.9890 3.5907 16 7 0.2408 -5.9830 3.0371 17 6 -0.3294 -6.5960 4.2394 18 6 0.0133 -8.0869 4.2632 19 1 -0.2463 -8.5624 3.3173 20 6 -0.6776 -8.8011 5.4567 21 6 0.2879 -9.9714 5.7417 22 8 1.5636 -9.6241 5.1905 23 6 1.5065 -8.3112 4.6107 24 6 0.4713 -2.6876 1.3191 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2682 -1.8419 -1.1663 27 1 3.1182 -3.4811 0.5983 28 1 2.5103 -3.9791 -1.0160 29 1 2.0138 -5.5599 1.1215 30 1 0.7106 -5.2619 -0.0692 31 1 0.7450 -6.5239 2.4095 32 1 -1.4123 -6.4719 4.2317 33 1 0.0853 -6.1140 5.1246 34 1 -1.6620 -9.1713 5.1701 35 1 -0.7475 -8.1371 6.3183 36 1 -0.0837 -10.8808 5.2695 37 1 0.3787 -10.1225 6.8174 38 1 1.8437 -7.5649 5.3301 39 1 2.1155 -8.2695 3.7076 40 1 -0.5776 -2.4304 1.1717 41 1 0.9039 -2.0580 2.0966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328119506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -149.993510 kcal Electronic energy + Delta-G solvation = -22987.814863 eV Core-core repulsion = 19480.498874 eV Total energy + Delta-G solvation = -3507.315989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35573 -40.36642 -39.11472 -36.23070 -36.09562 -34.16617 -33.27253 -31.64688 -30.34347 -29.55842 -27.45503 -26.09696 -24.19615 -23.14423 -21.93104 -21.43437 -20.89029 -19.28361 -18.88198 -17.93859 -17.33622 -16.92609 -16.82387 -16.63428 -16.17669 -15.82780 -15.39664 -15.15533 -14.76972 -14.67389 -14.53047 -14.29646 -13.83406 -13.50619 -13.44595 -13.21397 -12.88062 -12.67780 -12.53826 -12.33280 -12.29325 -12.24559 -12.08545 -11.94416 -11.74706 -11.33566 -11.19631 -10.64464 -10.49244 -10.30071 -10.25635 -9.40962 -8.27197 -6.42872 1.40240 1.43779 1.54434 1.64079 2.12314 2.37765 2.88725 2.99467 3.04509 3.44557 3.74788 3.81631 3.86792 4.08735 4.17166 4.23539 4.26689 4.30832 4.39713 4.58445 4.60675 4.69712 4.71730 4.79063 4.90253 4.91345 5.01435 5.03818 5.13917 5.21408 5.24491 5.37413 5.46889 5.49270 5.76145 6.01211 6.02583 6.15731 6.64262 7.04185 7.29310 7.38716 7.54349 8.79224 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003352 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.981808 B = 8350.029613 C = 8502.392016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.285 1.285 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.710 3.290 15 O -0.645 6.645 16 N -0.729 5.729 17 C 0.153 3.847 18 C -0.124 4.124 19 H 0.108 0.892 20 C -0.143 4.143 21 C 0.046 3.954 22 O -0.408 6.408 23 C 0.053 3.947 24 C 0.138 3.862 25 H 0.271 0.729 26 H 0.378 0.622 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 -18.456 6.632 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.398 6.398 11 C -0.149 4.149 12 C -0.014 4.014 13 N -0.371 5.371 14 C 0.411 3.589 15 O -0.528 6.528 16 N -0.386 5.386 17 C 0.029 3.971 18 C -0.143 4.143 19 H 0.126 0.874 20 C -0.181 4.181 21 C -0.030 4.030 22 O -0.328 6.328 23 C -0.023 4.023 24 C 0.014 3.986 25 H 0.080 0.920 26 H 0.229 0.771 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.255 -18.584 7.160 19.955 hybrid contribution -0.302 1.874 -0.036 1.899 sum 0.953 -16.710 7.123 18.190 Atomic orbital electron populations 1.69689 1.07148 1.28479 1.50456 1.25840 0.95819 1.02917 0.93113 0.85398 0.79148 0.78917 0.77518 1.18813 1.20260 1.21059 1.21895 0.94011 0.91357 1.52115 0.91337 1.19722 0.86391 0.93644 0.81026 1.86053 1.51475 1.52998 1.49320 1.22731 0.97086 0.93496 1.01594 1.22415 0.93807 0.95407 0.89799 1.47871 1.56001 1.11104 1.22130 1.15744 0.79624 0.82748 0.80742 1.90850 1.48705 1.63740 1.49466 1.44939 1.59897 1.06349 1.27466 1.21105 0.98396 0.91366 0.86250 1.23034 0.95994 0.93708 1.01530 0.87379 1.23125 1.00385 0.96993 0.97628 1.23284 0.82386 0.98052 0.99262 1.88386 1.33345 1.33853 1.77189 1.23537 0.96070 0.84324 0.98400 1.22387 0.98778 0.78838 0.98580 0.91975 0.77125 0.89832 0.89105 0.87856 0.91055 0.75359 0.91909 0.92379 0.87823 0.89896 0.89951 0.90621 0.92395 0.88656 0.95681 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.14 10.97 21.45 0.24 -49.90 16 2 C 0.02 1.24 5.28 84.66 0.45 1.68 16 3 Si 0.96 42.08 29.54 68.60 2.03 44.10 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.56 -29.05 8.12 25.60 0.21 -28.85 16 8 H 0.07 3.48 7.76 -2.91 -0.02 3.45 16 9 C 0.23 11.22 0.86 -10.35 -0.01 11.21 16 10 O -0.59 -29.91 13.07 -148.98 -1.95 -31.86 16 11 C -0.11 -4.12 6.23 31.99 0.20 -3.92 16 12 C 0.11 3.36 6.57 86.86 0.57 3.93 16 13 N -0.63 -25.60 3.33 -829.73 -2.76 -28.36 16 14 C 0.71 27.90 8.49 179.05 1.52 29.42 16 15 O -0.64 -31.55 16.67 -3.97 -0.07 -31.62 16 16 N -0.73 -19.23 5.47 -478.54 -2.62 -21.85 16 17 C 0.15 3.35 5.14 86.38 0.44 3.79 16 18 C -0.12 -1.81 3.10 -9.34 -0.03 -1.84 16 19 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 20 C -0.14 -1.70 6.50 31.85 0.21 -1.49 16 21 C 0.05 0.61 7.79 72.45 0.56 1.17 16 22 O -0.41 -7.83 11.36 -148.98 -1.69 -9.52 16 23 C 0.05 0.88 7.22 72.65 0.52 1.40 16 24 C 0.14 6.92 5.54 86.73 0.48 7.40 16 25 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 26 H 0.38 20.28 6.98 -74.06 -0.52 19.77 16 27 H 0.08 2.96 8.03 -2.38 -0.02 2.94 16 28 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.10 2.28 7.30 -2.39 -0.02 2.26 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 8.15 6.95 -92.71 -0.64 7.51 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.41 7.95 -2.39 -0.02 1.39 16 34 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 1.00 8.03 -2.38 -0.02 0.98 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.04 7.89 -2.39 -0.02 1.02 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 41 H 0.03 1.65 7.82 -2.39 -0.02 1.64 16 Total: -1.00 -68.88 332.79 -1.82 -70.70 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.12 Total: 34.39 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 5.13 Total: 23.91 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.14 Total: -100.11 kcal Atomic # 8 Polarization: -69.29 SS G_CDS: -3.71 Total: -73.00 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -68.88 -1.82 -70.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328119506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.296 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds