Wall clock time and date at job start Tue Mar 31 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55157 * 110.71748 * 184.74446 * 9 7 2 12 12 C 1.54912 * 101.57717 * 153.86625 * 11 9 7 13 13 N 1.47426 * 104.83264 * 322.98418 * 12 11 9 14 14 C 1.34775 * 125.65132 * 204.09079 * 13 12 11 15 15 O 1.21578 * 120.00216 * 180.02562 * 14 13 12 16 16 N 1.34776 * 119.99671 * 0.04987 * 14 13 12 17 17 C 1.46505 * 119.99903 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.08993 * 110.75285 * 57.01734 * 18 17 16 20 20 C 1.55303 * 110.84368 * 180.71810 * 18 17 16 21 21 C 1.54943 * 100.94142 * 152.32158 * 20 18 17 22 22 O 1.43647 * 105.13827 * 323.55355 * 21 20 18 23 23 C 1.43242 * 109.96997 * 24.42564 * 22 21 20 24 24 C 1.47024 * 108.70058 * 24.13475 * 13 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 27 27 H 1.08999 * 111.00382 * 271.93577 * 11 9 7 28 28 H 1.08996 * 111.00587 * 35.79081 * 11 9 7 29 29 H 1.09000 * 110.36215 * 204.15418 * 12 11 9 30 30 H 1.08995 * 110.46564 * 81.87606 * 12 11 9 31 31 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 32 32 H 1.08999 * 109.46796 * 299.99802 * 17 16 14 33 33 H 1.08999 * 109.46991 * 59.99735 * 17 16 14 34 34 H 1.09004 * 111.12373 * 270.23658 * 20 18 17 35 35 H 1.08998 * 111.12777 * 34.39871 * 20 18 17 36 36 H 1.09002 * 110.30928 * 204.63689 * 21 20 18 37 37 H 1.09003 * 110.39197 * 82.50902 * 21 20 18 38 38 H 1.08996 * 109.83173 * 238.77855 * 23 22 21 39 39 H 1.08996 * 109.90273 * 117.84439 * 23 22 21 40 40 H 1.08994 * 109.88361 * 239.51723 * 24 13 12 41 41 H 1.09000 * 110.00821 * 118.42718 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 2.2284 -3.6980 0.1164 12 6 1.3205 -4.7752 0.7607 13 7 0.4645 -4.0325 1.7037 14 6 -0.1414 -4.5510 2.7902 15 8 -0.8279 -3.8418 3.4999 16 7 0.0140 -5.8558 3.0900 17 6 -0.6442 -6.4194 4.2714 18 6 -0.3065 -7.9076 4.3820 19 1 0.7724 -8.0568 4.4229 20 6 -1.0039 -8.5422 5.6160 21 6 -1.1495 -10.0120 5.1479 22 8 -1.4308 -9.9318 3.7416 23 6 -0.9269 -8.7002 3.2114 24 6 0.3805 -2.6327 1.2620 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2040 -1.9078 -1.2839 27 1 2.5783 -4.0181 -0.8650 28 1 3.0673 -3.4535 0.7680 29 1 1.9236 -5.5100 1.2940 30 1 0.7118 -5.2648 0.0006 31 1 0.5623 -6.4216 2.5242 32 1 -0.2948 -5.9005 5.1640 33 1 -1.7233 -6.2971 4.1790 34 1 -0.3733 -8.4729 6.5025 35 1 -1.9787 -8.0879 5.7932 36 1 -1.9739 -10.4960 5.6717 37 1 -0.2216 -10.5583 5.3176 38 1 -1.7414 -8.1277 2.7678 39 1 -0.1656 -8.9042 2.4585 40 1 0.7597 -1.9741 2.0432 41 1 -0.6532 -2.3761 1.0305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328119509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:50 Heat of formation + Delta-G solvation = -125.689105 kcal Electronic energy + Delta-G solvation = -23028.247814 eV Core-core repulsion = 19521.985743 eV Total energy + Delta-G solvation = -3506.262071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05530 -39.34647 -37.43779 -35.03070 -34.27503 -32.24889 -32.21954 -30.15929 -29.43674 -27.80048 -26.03271 -24.58477 -22.87982 -22.33835 -20.98383 -19.69764 -19.41065 -17.67426 -17.15059 -17.03909 -16.09293 -15.78737 -15.37815 -15.03538 -14.92250 -14.45360 -14.16337 -13.90253 -13.48181 -13.15252 -12.95173 -12.87082 -12.57259 -12.16039 -11.96012 -11.69992 -11.54609 -11.46662 -11.19035 -11.13133 -11.05804 -10.81882 -10.67082 -10.47650 -10.17535 -9.79445 -9.64702 -9.31284 -8.89611 -8.68689 -8.31914 -7.77254 -6.28349 -4.37143 3.04741 3.20821 3.29373 3.32621 3.58511 3.71240 4.09460 4.26539 4.36037 4.49764 4.58529 4.88403 4.91615 4.99187 5.02435 5.33743 5.35839 5.39293 5.48222 5.57876 5.64532 5.66486 5.72782 5.78675 5.91982 5.99741 6.09170 6.50187 6.65740 6.70763 6.72330 6.88777 6.97949 7.25921 7.32083 7.61665 7.73337 8.02783 8.50175 8.67058 9.09711 9.29764 9.38178 10.79304 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.003393 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.981909 B = 8249.650382 C = 8550.833352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.596 6.596 16 N -0.754 5.754 17 C 0.152 3.848 18 C -0.136 4.136 19 H 0.092 0.908 20 C -0.147 4.147 21 C 0.051 3.949 22 O -0.385 6.385 23 C 0.054 3.946 24 C 0.123 3.877 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -16.309 7.606 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.475 6.475 16 N -0.412 5.412 17 C 0.027 3.973 18 C -0.155 4.155 19 H 0.110 0.890 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.305 6.305 23 C -0.023 4.023 24 C 0.001 3.999 25 H 0.080 0.920 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.257 -16.345 7.986 18.193 hybrid contribution 0.469 1.332 0.016 1.412 sum 0.726 -15.014 8.002 17.028 Atomic orbital electron populations 1.69708 1.05972 1.27825 1.49666 1.25088 0.95064 0.99800 0.93411 0.86348 0.80036 0.82760 0.77754 1.19611 1.20745 1.20775 1.21538 0.93693 0.90068 1.52285 0.91497 1.19506 0.86521 0.92048 0.81246 1.86090 1.53801 1.54486 1.45054 1.22719 0.97380 0.95100 1.00163 1.22238 0.92705 0.95178 0.91905 1.47971 1.50640 1.13046 1.25023 1.15499 0.80419 0.81428 0.80962 1.90888 1.44717 1.59654 1.52265 1.45126 1.56158 1.09353 1.30532 1.21032 0.97728 0.90221 0.88272 1.23009 1.01530 0.95284 0.95635 0.88972 1.23256 1.02068 0.95422 0.97818 1.23369 1.01011 0.96240 0.81896 1.88411 1.80532 1.38995 1.22538 1.23254 0.98598 0.84812 0.95616 1.22851 1.01528 0.77149 0.98368 0.92033 0.76655 0.90590 0.90500 0.92719 0.91982 0.77356 0.91363 0.91433 0.89452 0.89695 0.89661 0.92146 0.90619 0.91266 0.91792 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 10.95 55.43 0.61 -23.19 16 2 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -13.96 8.12 -34.44 -0.28 -14.24 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.93 0.86 -89.94 -0.08 5.85 16 10 O -0.59 -14.59 13.09 -35.23 -0.46 -15.05 16 11 C -0.12 -2.25 6.23 -24.58 -0.15 -2.41 16 12 C 0.10 1.76 6.57 -2.53 -0.02 1.74 16 13 N -0.63 -12.94 3.33 -176.24 -0.59 -13.53 16 14 C 0.72 14.33 8.49 -86.92 -0.74 13.59 16 15 O -0.60 -14.39 16.67 5.30 0.09 -14.30 16 16 N -0.75 -10.81 5.36 -65.22 -0.35 -11.16 16 17 C 0.15 1.82 5.00 -4.04 -0.02 1.80 16 18 C -0.14 -1.18 3.07 -88.67 -0.27 -1.45 16 19 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.15 -1.07 6.62 -24.48 -0.16 -1.23 16 21 C 0.05 0.40 7.78 38.18 0.30 0.69 16 22 O -0.39 -4.21 11.36 -35.23 -0.40 -4.61 16 23 C 0.05 0.52 7.10 37.88 0.27 0.79 16 24 C 0.12 3.00 5.25 -3.06 -0.02 2.98 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.38 9.82 7.41 45.56 0.34 10.16 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 29 H 0.05 0.74 7.30 -51.93 -0.38 0.36 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.39 4.65 6.81 -40.82 -0.28 4.37 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.81 7.76 -51.93 -0.40 0.40 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 41 H 0.06 1.70 7.93 -51.93 -0.41 1.29 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -30.97 332.34 -8.10 -39.07 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -5.72 Total: 12.52 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -1.26 Total: 9.84 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.33 Total: -47.88 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.77 Total: -33.96 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.97 -8.10 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328119509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.618 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds