Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55157 * 110.71748 * 184.74446 * 9 7 2 12 12 C 1.54912 * 101.57717 * 153.86625 * 11 9 7 13 13 N 1.47426 * 104.83264 * 322.98418 * 12 11 9 14 14 C 1.34775 * 125.65132 * 204.09079 * 13 12 11 15 15 O 1.21578 * 120.00216 * 180.02562 * 14 13 12 16 16 N 1.34776 * 119.99671 * 0.04987 * 14 13 12 17 17 C 1.46505 * 119.99903 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.08993 * 110.75285 * 57.01734 * 18 17 16 20 20 C 1.55303 * 110.84368 * 180.71810 * 18 17 16 21 21 C 1.54943 * 100.94142 * 152.32158 * 20 18 17 22 22 O 1.43647 * 105.13827 * 323.55355 * 21 20 18 23 23 C 1.43242 * 109.96997 * 24.42564 * 22 21 20 24 24 C 1.47024 * 108.70058 * 24.13475 * 13 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 27 27 H 1.08999 * 111.00382 * 271.93577 * 11 9 7 28 28 H 1.08996 * 111.00587 * 35.79081 * 11 9 7 29 29 H 1.09000 * 110.36215 * 204.15418 * 12 11 9 30 30 H 1.08995 * 110.46564 * 81.87606 * 12 11 9 31 31 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 32 32 H 1.08999 * 109.46796 * 299.99802 * 17 16 14 33 33 H 1.08999 * 109.46991 * 59.99735 * 17 16 14 34 34 H 1.09004 * 111.12373 * 270.23658 * 20 18 17 35 35 H 1.08998 * 111.12777 * 34.39871 * 20 18 17 36 36 H 1.09002 * 110.30928 * 204.63689 * 21 20 18 37 37 H 1.09003 * 110.39197 * 82.50902 * 21 20 18 38 38 H 1.08996 * 109.83173 * 238.77855 * 23 22 21 39 39 H 1.08996 * 109.90273 * 117.84439 * 23 22 21 40 40 H 1.08994 * 109.88361 * 239.51723 * 24 13 12 41 41 H 1.09000 * 110.00821 * 118.42718 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 2.2284 -3.6980 0.1164 12 6 1.3205 -4.7752 0.7607 13 7 0.4645 -4.0325 1.7037 14 6 -0.1414 -4.5510 2.7902 15 8 -0.8279 -3.8418 3.4999 16 7 0.0140 -5.8558 3.0900 17 6 -0.6442 -6.4194 4.2714 18 6 -0.3065 -7.9076 4.3820 19 1 0.7724 -8.0568 4.4229 20 6 -1.0039 -8.5422 5.6160 21 6 -1.1495 -10.0120 5.1479 22 8 -1.4308 -9.9318 3.7416 23 6 -0.9269 -8.7002 3.2114 24 6 0.3805 -2.6327 1.2620 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2040 -1.9078 -1.2839 27 1 2.5783 -4.0181 -0.8650 28 1 3.0673 -3.4535 0.7680 29 1 1.9236 -5.5100 1.2940 30 1 0.7118 -5.2648 0.0006 31 1 0.5623 -6.4216 2.5242 32 1 -0.2948 -5.9005 5.1640 33 1 -1.7233 -6.2971 4.1790 34 1 -0.3733 -8.4729 6.5025 35 1 -1.9787 -8.0879 5.7932 36 1 -1.9739 -10.4960 5.6717 37 1 -0.2216 -10.5583 5.3176 38 1 -1.7414 -8.1277 2.7678 39 1 -0.1656 -8.9042 2.4585 40 1 0.7597 -1.9741 2.0432 41 1 -0.6532 -2.3761 1.0305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328119509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = -150.020269 kcal Electronic energy + Delta-G solvation = -23029.302892 eV Core-core repulsion = 19521.985743 eV Total energy + Delta-G solvation = -3507.317150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36790 -40.37250 -39.11669 -36.23896 -36.08102 -34.22266 -33.25935 -31.64366 -30.32229 -29.52817 -27.44665 -26.11057 -24.22619 -23.20569 -21.82758 -21.44145 -20.90859 -19.25974 -18.88032 -17.87907 -17.47160 -16.85881 -16.80856 -16.73978 -16.15397 -15.73910 -15.52544 -15.19634 -14.77700 -14.68657 -14.47397 -14.09159 -13.90609 -13.51769 -13.40754 -13.30108 -12.87539 -12.66681 -12.53330 -12.32884 -12.25519 -12.21865 -12.10290 -12.00465 -11.76218 -11.33116 -11.16014 -10.66104 -10.49153 -10.29673 -10.26404 -9.40712 -8.26293 -6.42321 1.40085 1.43560 1.54236 1.64168 2.12251 2.37920 2.91627 3.00490 3.02569 3.44765 3.70941 3.80276 3.87486 4.06653 4.16870 4.25599 4.26966 4.33660 4.38871 4.58950 4.60161 4.68914 4.73357 4.79945 4.89952 4.94765 4.99069 5.06018 5.13828 5.22189 5.24642 5.36988 5.45338 5.50523 5.75059 6.02325 6.03756 6.16206 6.65117 7.04190 7.27808 7.34957 7.54324 8.79806 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.003393 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.981909 B = 8249.650382 C = 8550.833352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.635 5.635 14 C 0.709 3.291 15 O -0.645 6.645 16 N -0.729 5.729 17 C 0.152 3.848 18 C -0.122 4.122 19 H 0.113 0.887 20 C -0.144 4.144 21 C 0.046 3.954 22 O -0.410 6.410 23 C 0.051 3.949 24 C 0.142 3.858 25 H 0.269 0.731 26 H 0.375 0.625 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.409 0.591 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.029 0.971 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -18.320 8.062 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.372 5.372 14 C 0.411 3.589 15 O -0.528 6.528 16 N -0.387 5.387 17 C 0.028 3.972 18 C -0.141 4.141 19 H 0.131 0.869 20 C -0.182 4.182 21 C -0.029 4.029 22 O -0.330 6.330 23 C -0.025 4.025 24 C 0.018 3.982 25 H 0.079 0.921 26 H 0.224 0.776 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.084 -18.438 8.433 20.382 hybrid contribution -0.133 1.911 -0.093 1.918 sum 1.951 -16.527 8.340 18.615 Atomic orbital electron populations 1.69820 1.07137 1.28370 1.50216 1.25842 0.95804 1.02900 0.93168 0.85414 0.79185 0.78994 0.77480 1.18760 1.20336 1.21094 1.21877 0.93967 0.91321 1.52245 0.91370 1.19729 0.87060 0.93655 0.80415 1.86081 1.53729 1.54092 1.45613 1.22718 0.96890 0.93668 1.01517 1.22417 0.92315 0.94896 0.91848 1.47901 1.51503 1.11935 1.25864 1.15749 0.79927 0.82846 0.80369 1.90851 1.46747 1.61384 1.53796 1.44934 1.55467 1.07211 1.31060 1.21172 0.96731 0.92373 0.86969 1.22932 1.02765 0.92318 0.96107 0.86916 1.23276 1.02105 0.94876 0.97902 1.23569 1.02256 0.96636 0.80484 1.88388 1.81001 1.39310 1.24302 1.23271 0.98391 0.84640 0.96203 1.22321 0.99063 0.79095 0.97709 0.92135 0.77552 0.89070 0.89748 0.87859 0.91080 0.75381 0.91698 0.92865 0.87338 0.90265 0.88672 0.90602 0.92272 0.90016 0.95295 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 10.95 21.45 0.23 -50.10 16 2 C 0.02 1.25 5.26 84.66 0.45 1.69 16 3 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.56 -29.06 8.12 25.60 0.21 -28.86 16 8 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 9 C 0.23 11.17 0.86 -10.35 -0.01 11.16 16 10 O -0.59 -29.60 13.09 -148.98 -1.95 -31.55 16 11 C -0.11 -4.07 6.23 31.99 0.20 -3.87 16 12 C 0.11 3.35 6.57 86.86 0.57 3.92 16 13 N -0.64 -25.83 3.33 -829.77 -2.76 -28.59 16 14 C 0.71 28.22 8.49 179.05 1.52 29.74 16 15 O -0.65 -31.96 16.67 -3.96 -0.07 -32.03 16 16 N -0.73 -19.54 5.36 -478.53 -2.57 -22.10 16 17 C 0.15 3.40 5.00 86.38 0.43 3.83 16 18 C -0.12 -1.79 3.07 -9.53 -0.03 -1.82 16 19 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 20 C -0.14 -1.70 6.62 32.05 0.21 -1.49 16 21 C 0.05 0.59 7.78 72.65 0.56 1.16 16 22 O -0.41 -8.16 11.36 -148.98 -1.69 -9.85 16 23 C 0.05 0.89 7.10 72.45 0.51 1.41 16 24 C 0.14 7.15 5.25 86.73 0.46 7.61 16 25 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 26 H 0.38 19.90 7.41 -74.06 -0.55 19.35 16 27 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 29 H 0.10 2.27 7.30 -2.39 -0.02 2.26 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.41 8.27 6.81 -92.71 -0.63 7.64 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.37 8.07 -2.39 -0.02 1.35 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.04 8.04 -2.39 -0.02 1.02 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 1.20 7.76 -2.39 -0.02 1.19 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.03 1.61 7.81 -2.39 -0.02 1.60 16 41 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 Total: -1.00 -69.74 332.34 -1.83 -71.57 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.14 Total: 33.98 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 5.08 Total: 24.48 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -5.09 Total: -100.80 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -3.71 Total: -73.42 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.74 -1.83 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328119509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.450 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds