Wall clock time and date at job start Tue Mar 31 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46952 * 300.00133 * 3 2 1 6 6 H 1.48500 * 109.47095 * 59.99840 * 3 2 1 7 7 C 1.37877 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47482 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47069 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00243 * 180.02562 * 12 11 10 14 14 O 1.21585 * 120.00000 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00164 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00041 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47130 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.47057 * 125.40952 * 90.00073 * 18 17 16 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 17 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 0.96996 * 119.99552 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47286 * 59.99506 * 9 7 2 26 26 H 1.09001 * 109.47431 * 299.99896 * 9 7 2 27 27 H 1.09004 * 109.47067 * 60.00445 * 10 9 7 28 28 H 1.09001 * 109.47258 * 300.00039 * 10 9 7 29 29 H 1.09000 * 109.47358 * 60.00740 * 11 10 9 30 30 H 1.09001 * 109.47163 * 300.00160 * 11 10 9 31 31 H 0.96998 * 119.99697 * 0.02562 * 12 11 10 32 32 H 0.97005 * 120.00099 * 0.02562 * 15 13 12 33 33 H 1.09000 * 109.47188 * 59.99765 * 16 15 13 34 34 H 1.09002 * 109.47370 * 299.99891 * 16 15 13 35 35 H 1.09000 * 109.47340 * 59.99781 * 17 16 15 36 36 H 1.09001 * 109.47326 * 300.00351 * 17 16 15 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 17 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 17 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9830 -7.3713 0.0019 14 8 0.7876 -7.5935 0.0020 15 7 2.8588 -8.3957 0.0020 16 6 2.3705 -9.7769 0.0026 17 6 3.5605 -10.7386 0.0032 18 7 3.0721 -12.1197 0.0045 19 6 2.7878 -12.9241 -1.1933 20 6 2.3104 -14.2764 -0.6293 21 7 2.3744 -14.0878 0.8311 22 6 2.8128 -12.8503 1.0968 23 8 2.9620 -12.4284 2.2274 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8914 31 1 3.3859 -5.9234 0.0021 32 1 3.8125 -8.2185 0.0023 33 1 1.7646 -9.9485 -0.8870 34 1 1.7653 -9.9479 0.8929 35 1 4.1660 -10.5668 0.8931 36 1 4.1661 -10.5677 -0.8868 37 1 2.0016 -12.4595 -1.7884 38 1 3.6909 -13.0548 -1.7896 39 1 1.2877 -14.4829 -0.9447 40 1 2.9780 -15.0790 -0.9430 41 1 2.1379 -14.7548 1.4944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330880511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:11 Heat of formation + Delta-G solvation = -55.107857 kcal Electronic energy + Delta-G solvation = -21308.931273 eV Core-core repulsion = 17838.022585 eV Total energy + Delta-G solvation = -3470.908688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36888 -39.76378 -36.71430 -36.18292 -35.18653 -33.83900 -33.22935 -31.21223 -29.82390 -28.64319 -26.51854 -24.03672 -23.41723 -22.73383 -20.99438 -20.63553 -20.24786 -18.25082 -17.87429 -17.15131 -16.52469 -16.46851 -15.92262 -15.67265 -14.89151 -14.70300 -14.50428 -14.31682 -14.30329 -14.06695 -13.79019 -13.56579 -13.19768 -12.77554 -12.29050 -12.24317 -11.89879 -11.77873 -11.53906 -10.90506 -10.70259 -10.56745 -10.55133 -10.11590 -9.83731 -9.73420 -9.43108 -9.21493 -9.10451 -9.07073 -8.58272 -8.35779 -6.00188 -4.03117 1.99686 2.75100 2.92457 3.31105 3.38524 3.39529 3.42062 3.47202 3.87744 4.31656 4.34591 4.41415 4.48001 4.62028 4.80078 4.88208 5.02273 5.16732 5.23589 5.35616 5.61987 5.69964 5.76612 5.84721 6.17386 6.22086 6.43106 6.55613 6.65382 6.66221 6.82270 7.04900 7.05311 7.07837 7.66300 7.79092 7.99086 8.16007 8.20324 8.40006 8.77086 9.03896 9.60958 11.11159 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056638 B = 0.002006 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.252950 B =13952.535807 C =14002.567680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.702 3.298 14 O -0.592 6.592 15 N -0.750 5.750 16 C 0.123 3.877 17 C 0.143 3.857 18 N -0.630 5.630 19 C 0.090 3.910 20 C 0.093 3.907 21 N -0.743 5.743 22 C 0.699 3.301 23 O -0.581 6.581 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.394 0.606 32 H 0.395 0.605 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 -30.342 -4.804 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.470 6.470 15 N -0.407 5.407 16 C -0.003 4.003 17 C 0.020 3.980 18 N -0.369 5.369 19 C -0.034 4.034 20 C -0.032 4.032 21 N -0.406 5.406 22 C 0.399 3.601 23 O -0.458 6.458 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.084 -30.038 -4.245 31.395 hybrid contribution 1.125 0.751 0.084 1.355 sum 9.210 -29.287 -4.161 30.981 Atomic orbital electron populations 1.69978 1.06049 1.26549 1.50677 1.25040 0.94869 0.99323 0.95337 0.86523 0.80027 0.83770 0.77576 1.19777 1.21030 1.21014 1.21245 0.93028 0.90939 1.50737 0.92589 1.19037 0.93884 0.90830 0.97717 1.21889 0.99780 0.93312 1.00834 1.21519 0.91300 0.84120 1.01901 1.45370 1.10474 1.04374 1.79292 1.15958 0.85211 0.80739 0.77981 1.90926 1.14165 1.84099 1.57775 1.44883 1.09005 1.05011 1.81825 1.21482 0.96481 0.79412 1.02974 1.21294 0.95307 0.77325 1.04122 1.46916 1.70632 1.13242 1.06102 1.22443 1.01918 0.90095 0.88931 1.22413 1.02657 0.97395 0.80776 1.45170 1.72304 1.14941 1.08153 1.15914 0.78119 0.81480 0.84623 1.91004 1.59789 1.74003 1.20982 0.92995 0.96240 0.96210 0.92742 0.92761 0.91955 0.91946 0.77284 0.77145 0.91568 0.91206 0.88966 0.89381 0.89697 0.89763 0.89752 0.89846 0.72855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 12 N -0.74 -10.93 5.56 -65.22 -0.36 -11.29 16 13 C 0.70 11.04 8.57 -86.92 -0.74 10.29 16 14 O -0.59 -12.10 16.34 5.29 0.09 -12.01 16 15 N -0.75 -8.15 5.56 -65.23 -0.36 -8.51 16 16 C 0.12 1.27 6.00 -4.04 -0.02 1.24 16 17 C 0.14 1.03 6.11 -4.04 -0.02 1.00 16 18 N -0.63 -4.81 2.96 -178.81 -0.53 -5.34 16 19 C 0.09 0.33 7.67 -3.16 -0.02 0.30 16 20 C 0.09 0.26 8.08 -2.98 -0.02 0.23 16 21 N -0.74 -4.72 6.39 -64.46 -0.41 -5.13 16 22 C 0.70 7.28 8.60 -88.40 -0.76 6.52 16 23 O -0.58 -8.84 17.53 5.28 0.09 -8.75 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 4.53 8.49 -40.82 -0.35 4.18 16 32 H 0.40 2.90 8.49 -40.82 -0.35 2.55 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.43 2.11 8.96 -40.82 -0.37 1.74 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -38.81 349.75 -9.32 -48.13 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.51 Total: 0.83 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.32 Total: 6.50 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.93 Total: -56.55 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.18 Total: -20.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.81 -9.32 -48.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330880511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.978 kcal (2) G-P(sol) polarization free energy of solvation -38.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds