Wall clock time and date at job start Tue Mar 31 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46952 * 300.00133 * 3 2 1 6 6 H 1.48500 * 109.47095 * 59.99840 * 3 2 1 7 7 C 1.37877 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47482 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47069 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00243 * 180.02562 * 12 11 10 14 14 O 1.21585 * 120.00000 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00164 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00041 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47130 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.47057 * 125.40952 * 90.00073 * 18 17 16 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 17 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 0.96996 * 119.99552 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47286 * 59.99506 * 9 7 2 26 26 H 1.09001 * 109.47431 * 299.99896 * 9 7 2 27 27 H 1.09004 * 109.47067 * 60.00445 * 10 9 7 28 28 H 1.09001 * 109.47258 * 300.00039 * 10 9 7 29 29 H 1.09000 * 109.47358 * 60.00740 * 11 10 9 30 30 H 1.09001 * 109.47163 * 300.00160 * 11 10 9 31 31 H 0.96998 * 119.99697 * 0.02562 * 12 11 10 32 32 H 0.97005 * 120.00099 * 0.02562 * 15 13 12 33 33 H 1.09000 * 109.47188 * 59.99765 * 16 15 13 34 34 H 1.09002 * 109.47370 * 299.99891 * 16 15 13 35 35 H 1.09000 * 109.47340 * 59.99781 * 17 16 15 36 36 H 1.09001 * 109.47326 * 300.00351 * 17 16 15 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 17 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 17 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9830 -7.3713 0.0019 14 8 0.7876 -7.5935 0.0020 15 7 2.8588 -8.3957 0.0020 16 6 2.3705 -9.7769 0.0026 17 6 3.5605 -10.7386 0.0032 18 7 3.0721 -12.1197 0.0045 19 6 2.7878 -12.9241 -1.1933 20 6 2.3104 -14.2764 -0.6293 21 7 2.3744 -14.0878 0.8311 22 6 2.8128 -12.8503 1.0968 23 8 2.9620 -12.4284 2.2274 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8914 31 1 3.3859 -5.9234 0.0021 32 1 3.8125 -8.2185 0.0023 33 1 1.7646 -9.9485 -0.8870 34 1 1.7653 -9.9479 0.8929 35 1 4.1660 -10.5668 0.8931 36 1 4.1661 -10.5677 -0.8868 37 1 2.0016 -12.4595 -1.7884 38 1 3.6909 -13.0548 -1.7896 39 1 1.2877 -14.4829 -0.9447 40 1 2.9780 -15.0790 -0.9430 41 1 2.1379 -14.7548 1.4944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330880511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:10 Heat of formation + Delta-G solvation = -87.463263 kcal Electronic energy + Delta-G solvation = -21310.334308 eV Core-core repulsion = 17838.022585 eV Total energy + Delta-G solvation = -3472.311723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96283 -41.01810 -37.52674 -37.25858 -36.51167 -35.19920 -34.62325 -32.95035 -30.52037 -29.38345 -28.22151 -25.27742 -24.18988 -23.76554 -22.31041 -21.99549 -21.22664 -19.32065 -18.59535 -18.53661 -17.76251 -17.19474 -17.06032 -16.84389 -16.47472 -15.99303 -15.55689 -15.36301 -15.23680 -14.95551 -14.74651 -14.59008 -14.25548 -13.74192 -13.70248 -13.53220 -13.05572 -12.78482 -12.77588 -12.53376 -12.43122 -12.32429 -11.68952 -11.65912 -11.42697 -11.32470 -11.14159 -10.55235 -10.44187 -10.40551 -9.80392 -9.54796 -8.18590 -6.29987 1.32762 1.42540 1.42827 1.56090 1.89872 2.05913 2.11668 2.42849 3.03473 3.15199 3.39321 3.61745 3.80707 3.83052 4.18278 4.23994 4.24764 4.37745 4.39083 4.57726 4.68361 4.74443 4.83498 4.97329 5.00024 5.01937 5.08325 5.18700 5.35918 5.47368 5.55369 5.67266 5.72627 5.85702 5.99106 6.17255 6.23769 6.48158 6.87739 7.10555 7.39537 7.52000 7.55820 8.93808 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056638 B = 0.002006 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.252950 B =13952.535807 C =14002.567680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.727 5.727 13 C 0.698 3.302 14 O -0.643 6.643 15 N -0.726 5.726 16 C 0.129 3.871 17 C 0.150 3.850 18 N -0.631 5.631 19 C 0.084 3.916 20 C 0.091 3.909 21 N -0.738 5.738 22 C 0.683 3.317 23 O -0.643 6.643 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.414 0.586 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 -31.231 -6.416 34.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.383 5.383 13 C 0.397 3.603 14 O -0.525 6.525 15 N -0.384 5.384 16 C 0.002 3.998 17 C 0.027 3.973 18 N -0.369 5.369 19 C -0.038 4.038 20 C -0.032 4.032 21 N -0.399 5.399 22 C 0.383 3.617 23 O -0.525 6.525 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.251 0.749 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 10.812 -30.991 -5.914 33.351 hybrid contribution 0.254 0.938 0.554 1.119 sum 11.066 -30.052 -5.360 32.471 Atomic orbital electron populations 1.70125 1.07968 1.27701 1.51817 1.26053 0.95776 1.03647 0.94865 0.85343 0.79221 0.78558 0.77564 1.18097 1.20563 1.20709 1.21718 0.93804 0.91942 1.50214 0.91396 1.18959 0.94506 0.93027 0.95090 1.21586 0.98410 0.91517 1.02249 1.21086 0.91393 0.84692 1.00404 1.44984 1.10953 1.03348 1.79024 1.16150 0.84974 0.81491 0.77691 1.90897 1.16708 1.84874 1.60012 1.44629 1.09568 1.04208 1.79993 1.21472 0.97698 0.79558 1.01029 1.21281 0.93826 0.76574 1.05612 1.47038 1.69811 1.13271 1.06779 1.22798 1.03613 0.89731 0.87686 1.22731 1.04431 0.97866 0.78186 1.45236 1.70837 1.13651 1.10189 1.16356 0.78266 0.82716 0.84406 1.90945 1.62482 1.75515 1.23525 0.92849 0.98847 0.99091 0.91394 0.91024 0.93342 0.93876 0.74934 0.74592 0.91579 0.95126 0.89979 0.85245 0.88850 0.86993 0.88172 0.87114 0.72373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.15 4.97 29.84 0.15 1.30 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.15 5.44 5.67 86.38 0.49 5.93 16 12 N -0.73 -20.57 5.56 -478.52 -2.66 -23.23 16 13 C 0.70 21.59 8.57 179.06 1.53 23.12 16 14 O -0.64 -26.88 16.34 -3.98 -0.07 -26.95 16 15 N -0.73 -14.77 5.56 -478.55 -2.66 -17.43 16 16 C 0.13 2.59 6.00 86.38 0.52 3.11 16 17 C 0.15 1.90 6.11 86.38 0.53 2.43 16 18 N -0.63 -8.72 2.96 -838.36 -2.48 -11.20 16 19 C 0.08 0.36 7.67 86.65 0.66 1.02 16 20 C 0.09 0.25 8.08 86.58 0.70 0.95 16 21 N -0.74 -8.64 6.39 -476.58 -3.04 -11.68 16 22 C 0.68 14.19 8.60 179.57 1.55 15.73 16 23 O -0.64 -20.53 17.53 -4.01 -0.07 -20.60 16 24 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.41 8.41 8.49 -92.71 -0.79 7.62 16 32 H 0.42 4.98 8.49 -92.70 -0.79 4.20 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.25 7.91 -2.39 -0.02 1.23 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.11 -0.24 8.14 -2.39 -0.02 -0.25 16 41 H 0.43 4.05 8.96 -92.71 -0.83 3.21 16 Total: -1.00 -88.68 349.75 -3.03 -91.71 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -1.35 Total: 10.64 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.98 Total: 20.05 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -10.56 Total: -120.91 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.14 Total: -47.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -88.68 -3.03 -91.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330880511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.249 kcal (2) G-P(sol) polarization free energy of solvation -88.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds