Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00258 * 2 1 4 4 H 1.09009 * 109.46903 * 4.99856 * 3 2 1 5 5 C 1.52994 * 109.47172 * 124.99762 * 3 2 1 6 6 O 1.42901 * 109.46786 * 55.00430 * 5 3 2 7 7 C 1.42903 * 113.99983 * 179.97438 * 6 5 3 8 8 N 1.46499 * 109.47366 * 245.00551 * 3 2 1 9 9 C 1.34770 * 120.00278 * 84.99393 * 8 3 2 10 10 O 1.21586 * 120.00020 * 0.02562 * 9 8 3 11 11 N 1.34781 * 119.99924 * 179.97438 * 9 8 3 12 12 C 1.47419 * 125.64850 * 359.97438 * 11 9 8 13 13 C 1.54905 * 104.83258 * 155.91019 * 12 11 9 14 14 C 1.55153 * 101.58432 * 37.00633 * 13 12 11 15 15 O 1.42899 * 110.72123 * 83.04292 * 14 13 12 16 16 C 1.50702 * 110.72079 * 206.13591 * 14 13 12 17 17 H 1.08002 * 120.00299 * 357.56389 * 16 14 13 18 18 C 1.37884 * 119.99942 * 177.27948 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47319 * 125.61416 * 180.20438 * 11 9 8 25 25 H 1.07997 * 120.00033 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99802 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47041 * 174.99957 * 5 3 2 29 29 H 1.08995 * 109.47420 * 295.00389 * 5 3 2 30 30 H 1.08995 * 109.47195 * 300.00242 * 7 6 5 31 31 H 1.09007 * 109.46913 * 60.00463 * 7 6 5 32 32 H 1.09000 * 109.47429 * 179.97438 * 7 6 5 33 33 H 0.97003 * 119.99773 * 264.99721 * 8 3 2 34 34 H 1.08994 * 110.36742 * 37.06455 * 12 11 9 35 35 H 1.09008 * 110.36374 * 274.74316 * 12 11 9 36 36 H 1.09004 * 111.00291 * 278.93328 * 13 12 11 37 37 H 1.09005 * 111.00807 * 155.08431 * 13 12 11 38 38 H 0.96699 * 114.00083 * 182.43988 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.09004 * 110.06766 * 61.67566 * 24 11 9 41 41 H 1.08999 * 109.85130 * 300.41923 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3586 2.1316 0.0895 5 6 3.0350 1.3330 1.1816 6 8 3.8841 0.1849 1.1274 7 6 4.8348 0.1142 2.1919 8 7 2.8132 1.4362 -1.2518 9 6 2.2098 1.9331 -2.3497 10 8 1.0435 2.2730 -2.3012 11 7 2.8997 2.0542 -3.5012 12 6 4.3129 1.6840 -3.6992 13 6 4.4437 1.4174 -5.2195 14 6 3.5050 2.5035 -5.8082 15 8 4.1838 3.7567 -5.9113 16 6 2.9717 2.0762 -7.1514 17 1 3.2910 1.1407 -7.5865 18 6 2.0714 2.8767 -7.8221 19 7 1.6826 4.0159 -7.2922 20 14 1.4045 2.3434 -9.4834 21 1 0.6936 1.0476 -9.3387 22 1 0.4614 3.3719 -9.9915 23 1 2.5286 2.1871 -10.4412 24 6 2.3670 2.5830 -4.7689 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6424 2.2368 1.1313 29 1 2.4722 1.3250 2.1150 30 1 5.4794 0.9926 2.1622 31 1 4.3096 0.0811 3.1465 32 1 5.4402 -0.7851 2.0794 33 1 3.7438 1.1653 -1.2905 34 1 4.5517 0.7831 -3.1341 35 1 4.9654 2.5045 -3.4004 36 1 4.0913 0.4175 -5.4726 37 1 5.4703 1.5647 -5.5551 38 1 3.6298 4.4783 -6.2389 39 1 1.0495 4.5793 -7.7643 40 1 2.0544 3.6192 -4.6399 41 1 1.5224 1.9770 -5.0969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332093287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -97.112042 kcal Electronic energy + Delta-G solvation = -23260.992910 eV Core-core repulsion = 19755.970033 eV Total energy + Delta-G solvation = -3505.022877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78109 -38.37535 -37.28675 -35.29924 -34.21038 -32.35088 -32.16124 -30.03790 -29.03713 -27.68801 -26.39686 -24.95058 -23.10136 -22.33597 -19.87759 -19.65597 -19.41835 -17.52959 -17.03903 -16.68356 -16.25064 -15.57690 -15.50324 -15.18460 -14.89541 -14.30330 -14.25633 -13.62836 -13.40012 -12.98643 -12.84385 -12.77608 -12.45653 -12.09216 -11.70515 -11.67566 -11.51474 -11.40291 -11.06517 -10.99985 -10.76724 -10.61389 -10.48552 -10.13417 -9.94430 -9.65424 -9.31656 -9.27076 -8.78978 -8.63601 -8.28054 -7.70646 -6.25181 -4.33530 2.31536 3.24140 3.29361 3.30784 3.33555 3.53523 3.82408 4.29568 4.53505 4.73852 4.87201 5.02649 5.06317 5.12031 5.19729 5.30967 5.41241 5.42025 5.44865 5.75620 5.76857 5.85082 6.03343 6.06977 6.15327 6.55285 6.71542 6.73863 6.78291 6.83957 6.93449 6.97915 7.05359 7.31020 7.37279 7.71217 7.77014 8.06881 8.59650 8.70288 9.19842 9.34090 9.43834 10.82679 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004074 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.307863 B = 6870.884096 C = 7405.099133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C 0.197 3.803 4 H 0.101 0.899 5 C 0.057 3.943 6 O -0.385 6.385 7 C 0.031 3.969 8 N -0.741 5.741 9 C 0.716 3.284 10 O -0.596 6.596 11 N -0.631 5.631 12 C 0.104 3.896 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.586 6.586 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.124 3.876 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.397 0.603 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -5.934 16.352 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.092 3.908 4 H 0.119 0.881 5 C -0.020 4.020 6 O -0.304 6.304 7 C -0.065 4.065 8 N -0.398 5.398 9 C 0.418 3.582 10 O -0.475 6.475 11 N -0.368 5.368 12 C -0.020 4.020 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.576 4.576 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.002 3.998 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.199 -5.986 16.480 18.029 hybrid contribution -0.430 0.086 -0.846 0.953 sum 3.768 -5.899 15.634 17.129 Atomic orbital electron populations 1.23874 0.95955 1.01823 0.99030 1.23130 0.95873 0.98526 1.00851 1.19911 0.92244 0.96635 0.82040 0.88088 1.22864 0.92494 0.88691 0.97986 1.87914 1.48966 1.44516 1.49011 1.22743 0.91894 1.02021 0.89877 1.45131 1.15118 1.70023 1.09503 1.15531 0.84439 0.78693 0.79543 1.90867 1.15291 1.57417 1.83968 1.48023 1.12124 1.66321 1.10296 1.22220 0.83043 0.98365 0.98337 1.22720 1.00900 0.99598 0.92152 1.19493 0.86293 0.81830 0.91656 1.86085 1.43456 1.20955 1.89004 1.21483 1.26138 1.06745 1.03278 0.91605 1.25070 0.95164 0.94705 0.98303 1.69642 1.33147 1.11665 1.38910 0.86457 0.78747 0.78465 0.83208 1.20027 1.21082 1.20014 1.22905 0.98719 0.98376 0.79837 0.88677 0.88296 0.87035 0.92348 0.91765 0.94043 0.94154 0.89617 0.76847 0.92551 0.92122 0.90574 0.90631 0.76534 0.91929 0.91977 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.16 -2.21 8.67 -36.03 -0.31 -2.52 16 3 C 0.20 2.65 2.73 -69.09 -0.19 2.47 16 4 H 0.10 1.47 7.23 -51.92 -0.38 1.09 16 5 C 0.06 0.57 5.67 37.15 0.21 0.78 16 6 O -0.39 -4.04 9.78 -35.23 -0.34 -4.39 16 7 C 0.03 0.23 11.01 101.05 1.11 1.34 16 8 N -0.74 -11.72 5.01 -59.82 -0.30 -12.02 16 9 C 0.72 14.85 8.45 -86.92 -0.73 14.11 16 10 O -0.60 -14.44 16.33 5.29 0.09 -14.35 16 11 N -0.63 -13.42 3.33 -176.00 -0.59 -14.01 16 12 C 0.10 1.87 6.57 -2.53 -0.02 1.85 16 13 C -0.12 -2.34 6.23 -24.59 -0.15 -2.49 16 14 C 0.25 6.07 0.85 -89.94 -0.08 5.99 16 15 O -0.59 -14.87 13.08 -35.23 -0.46 -15.33 16 16 C -0.54 -14.24 8.11 -34.44 -0.28 -14.51 16 17 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 18 C 0.07 1.87 5.27 -17.82 -0.09 1.77 16 19 N -0.89 -24.10 10.96 55.43 0.61 -23.49 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.12 3.07 5.39 -2.90 -0.02 3.06 16 25 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 27 H 0.11 1.47 7.86 -52.49 -0.41 1.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 5.60 6.86 -40.82 -0.28 5.32 16 34 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 35 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.38 10.01 7.24 45.56 0.33 10.34 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.68 8.00 -51.93 -0.42 1.27 16 41 H 0.06 1.72 7.81 -51.93 -0.41 1.32 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -30.65 341.92 -6.69 -37.34 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.69 Total: 15.39 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.13 Total: 10.05 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.28 Total: -49.51 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.72 Total: -34.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.65 -6.69 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332093287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.775 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds