Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00258 * 2 1 4 4 H 1.09009 * 109.46903 * 4.99856 * 3 2 1 5 5 C 1.52994 * 109.47172 * 124.99762 * 3 2 1 6 6 O 1.42901 * 109.46786 * 55.00430 * 5 3 2 7 7 C 1.42903 * 113.99983 * 179.97438 * 6 5 3 8 8 N 1.46499 * 109.47366 * 245.00551 * 3 2 1 9 9 C 1.34770 * 120.00278 * 84.99393 * 8 3 2 10 10 O 1.21586 * 120.00020 * 0.02562 * 9 8 3 11 11 N 1.34781 * 119.99924 * 179.97438 * 9 8 3 12 12 C 1.47419 * 125.64850 * 359.97438 * 11 9 8 13 13 C 1.54905 * 104.83258 * 155.91019 * 12 11 9 14 14 C 1.55153 * 101.58432 * 37.00633 * 13 12 11 15 15 O 1.42899 * 110.72123 * 83.04292 * 14 13 12 16 16 C 1.50702 * 110.72079 * 206.13591 * 14 13 12 17 17 H 1.08002 * 120.00299 * 357.56389 * 16 14 13 18 18 C 1.37884 * 119.99942 * 177.27948 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47319 * 125.61416 * 180.20438 * 11 9 8 25 25 H 1.07997 * 120.00033 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99802 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47041 * 174.99957 * 5 3 2 29 29 H 1.08995 * 109.47420 * 295.00389 * 5 3 2 30 30 H 1.08995 * 109.47195 * 300.00242 * 7 6 5 31 31 H 1.09007 * 109.46913 * 60.00463 * 7 6 5 32 32 H 1.09000 * 109.47429 * 179.97438 * 7 6 5 33 33 H 0.97003 * 119.99773 * 264.99721 * 8 3 2 34 34 H 1.08994 * 110.36742 * 37.06455 * 12 11 9 35 35 H 1.09008 * 110.36374 * 274.74316 * 12 11 9 36 36 H 1.09004 * 111.00291 * 278.93328 * 13 12 11 37 37 H 1.09005 * 111.00807 * 155.08431 * 13 12 11 38 38 H 0.96699 * 114.00083 * 182.43988 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.09004 * 110.06766 * 61.67566 * 24 11 9 41 41 H 1.08999 * 109.85130 * 300.41923 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3586 2.1316 0.0895 5 6 3.0350 1.3330 1.1816 6 8 3.8841 0.1849 1.1274 7 6 4.8348 0.1142 2.1919 8 7 2.8132 1.4362 -1.2518 9 6 2.2098 1.9331 -2.3497 10 8 1.0435 2.2730 -2.3012 11 7 2.8997 2.0542 -3.5012 12 6 4.3129 1.6840 -3.6992 13 6 4.4437 1.4174 -5.2195 14 6 3.5050 2.5035 -5.8082 15 8 4.1838 3.7567 -5.9113 16 6 2.9717 2.0762 -7.1514 17 1 3.2910 1.1407 -7.5865 18 6 2.0714 2.8767 -7.8221 19 7 1.6826 4.0159 -7.2922 20 14 1.4045 2.3434 -9.4834 21 1 0.6936 1.0476 -9.3387 22 1 0.4614 3.3719 -9.9915 23 1 2.5286 2.1871 -10.4412 24 6 2.3670 2.5830 -4.7689 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6424 2.2368 1.1313 29 1 2.4722 1.3250 2.1150 30 1 5.4794 0.9926 2.1622 31 1 4.3096 0.0811 3.1465 32 1 5.4402 -0.7851 2.0794 33 1 3.7438 1.1653 -1.2905 34 1 4.5517 0.7831 -3.1341 35 1 4.9654 2.5045 -3.4004 36 1 4.0913 0.4175 -5.4726 37 1 5.4703 1.5647 -5.5551 38 1 3.6298 4.4783 -6.2389 39 1 1.0495 4.5793 -7.7643 40 1 2.0544 3.6192 -4.6399 41 1 1.5224 1.9770 -5.0969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332093287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -120.502799 kcal Electronic energy + Delta-G solvation = -23262.007209 eV Core-core repulsion = 19755.970033 eV Total energy + Delta-G solvation = -3506.037176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33110 -39.56624 -38.72058 -36.50244 -36.04636 -34.19435 -33.66509 -31.63162 -30.14745 -29.43721 -27.23954 -26.66678 -24.47288 -23.62918 -21.46897 -21.07228 -20.89057 -19.23006 -18.85343 -17.77343 -17.27564 -17.01037 -16.67451 -16.45082 -16.39891 -15.95176 -15.77945 -15.01867 -14.74963 -14.72743 -14.36892 -14.13118 -13.76797 -13.50038 -13.32616 -13.15407 -12.82871 -12.59290 -12.46631 -12.40038 -12.31736 -12.30860 -12.08883 -12.04634 -11.33101 -11.17214 -10.64002 -10.60949 -10.43307 -10.27890 -10.20513 -9.39801 -8.25844 -6.41685 1.19346 1.43197 1.43926 1.51926 1.84435 2.17148 2.38672 2.83592 3.00849 3.12825 3.79035 3.81293 3.98201 4.08883 4.18862 4.21810 4.37891 4.46299 4.51628 4.60516 4.61657 4.66366 4.72534 4.73055 4.94712 5.01821 5.05329 5.13714 5.24569 5.36472 5.47988 5.50140 5.67896 5.75668 5.84319 6.03982 6.19464 6.23280 6.64659 7.08056 7.29226 7.37089 7.59222 8.80262 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.004074 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.307863 B = 6870.884096 C = 7405.099133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 C 0.190 3.810 4 H 0.086 0.914 5 C 0.067 3.933 6 O -0.404 6.404 7 C 0.026 3.974 8 N -0.720 5.720 9 C 0.711 3.289 10 O -0.639 6.639 11 N -0.637 5.637 12 C 0.109 3.891 13 C -0.110 4.110 14 C 0.233 3.767 15 O -0.587 6.587 16 C -0.560 4.560 17 H 0.067 0.933 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.143 3.857 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.409 0.591 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.376 0.624 39 H 0.270 0.730 40 H 0.027 0.973 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -7.400 17.447 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C 0.085 3.915 4 H 0.104 0.896 5 C -0.010 4.010 6 O -0.324 6.324 7 C -0.070 4.070 8 N -0.376 5.376 9 C 0.413 3.587 10 O -0.521 6.521 11 N -0.374 5.374 12 C -0.013 4.013 13 C -0.148 4.148 14 C 0.193 3.807 15 O -0.396 6.396 16 C -0.598 4.598 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.556 5.556 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.192 1.192 24 C 0.019 3.981 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.758 -7.484 17.623 19.994 hybrid contribution -0.902 0.529 -1.118 1.531 sum 4.855 -6.955 16.505 18.557 Atomic orbital electron populations 1.24011 0.96164 1.02184 0.98701 1.23182 0.95951 0.98633 1.01112 1.20125 0.93029 0.96241 0.82077 0.89625 1.22743 0.92258 0.89154 0.96893 1.87871 1.49601 1.44451 1.50458 1.22923 0.91600 1.02935 0.89522 1.44998 1.15571 1.68343 1.08719 1.15753 0.83997 0.78681 0.80279 1.90834 1.17325 1.59162 1.84753 1.47972 1.13478 1.66453 1.09463 1.22367 0.81036 1.00517 0.97383 1.22714 1.00651 0.98134 0.93304 1.19697 0.87419 0.82470 0.91112 1.86074 1.43376 1.21185 1.88920 1.21836 1.26594 1.06968 1.04401 0.91452 1.25822 0.95407 0.94772 1.01505 1.69751 1.33399 1.12417 1.39988 0.85521 0.78222 0.77936 0.79442 1.19879 1.20920 1.19163 1.22384 0.98055 0.95654 0.81990 0.86975 0.89399 0.86335 0.91440 0.89671 0.93211 0.92986 0.88644 0.75445 0.88467 0.91083 0.89998 0.89068 0.77386 0.92026 0.95434 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 14.32 67.78 0.97 -3.44 16 2 C -0.17 -4.33 8.67 25.64 0.22 -4.10 16 3 C 0.19 4.86 2.73 44.24 0.12 4.99 16 4 H 0.09 2.48 7.23 -2.38 -0.02 2.46 16 5 C 0.07 1.17 5.67 71.98 0.41 1.58 16 6 O -0.40 -7.28 9.78 -148.98 -1.46 -8.74 16 7 C 0.03 0.30 11.01 113.37 1.25 1.54 16 8 N -0.72 -21.65 5.01 -461.42 -2.31 -23.96 16 9 C 0.71 29.38 8.45 179.05 1.51 30.89 16 10 O -0.64 -31.71 16.33 -3.99 -0.07 -31.78 16 11 N -0.64 -26.93 3.33 -829.01 -2.76 -29.69 16 12 C 0.11 3.66 6.57 86.85 0.57 4.23 16 13 C -0.11 -4.26 6.23 31.98 0.20 -4.06 16 14 C 0.23 11.50 0.85 -10.35 -0.01 11.49 16 15 O -0.59 -30.09 13.08 -148.98 -1.95 -32.04 16 16 C -0.56 -29.83 8.11 25.60 0.21 -29.62 16 17 H 0.07 3.47 7.77 -2.91 -0.02 3.45 16 18 C 0.03 1.37 5.27 84.66 0.45 1.82 16 19 N -0.92 -50.65 10.96 21.45 0.24 -50.41 16 20 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C 0.14 7.33 5.39 86.67 0.47 7.80 16 25 H 0.11 2.43 8.06 -2.91 -0.02 2.40 16 26 H 0.09 2.43 7.84 -2.91 -0.02 2.41 16 27 H 0.12 2.88 7.86 -2.91 -0.02 2.85 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.41 10.37 6.86 -92.71 -0.64 9.73 16 34 H 0.10 2.50 7.30 -2.39 -0.02 2.49 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 3.05 8.03 -2.38 -0.02 3.04 16 37 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 38 H 0.38 20.23 7.24 -74.06 -0.54 19.70 16 39 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 40 H 0.03 1.56 8.00 -2.39 -0.02 1.54 16 41 H 0.03 1.60 7.81 -2.39 -0.02 1.58 16 Total: -1.00 -67.70 341.92 -0.06 -67.76 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.14 Total: 41.13 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.36 Total: 23.12 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.84 Total: -104.07 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -3.47 Total: -72.55 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -67.70 -0.06 -67.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332093287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.740 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds