Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00290 * 2 1 4 4 H 1.08998 * 109.46694 * 245.00141 * 3 2 1 5 5 C 1.52996 * 109.47048 * 124.99887 * 3 2 1 6 6 O 1.42900 * 109.47301 * 304.99433 * 5 3 2 7 7 C 1.42898 * 114.00150 * 179.97438 * 6 5 3 8 8 N 1.46496 * 109.46999 * 4.99690 * 3 2 1 9 9 C 1.34778 * 119.99967 * 275.00393 * 8 3 2 10 10 O 1.21585 * 119.99945 * 359.97438 * 9 8 3 11 11 N 1.34774 * 120.00134 * 180.02562 * 9 8 3 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 O 1.42897 * 111.00579 * 82.57426 * 14 13 12 16 16 C 1.50708 * 110.99876 * 206.38340 * 14 13 12 17 17 H 1.07995 * 120.00149 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99534 * 180.02562 * 16 14 13 19 19 N 1.31519 * 120.00164 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99936 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47324 * 59.99299 * 20 18 16 22 22 H 1.48498 * 109.47370 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47013 * 299.99548 * 20 18 16 24 24 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 25 25 H 1.07993 * 120.00310 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99585 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99585 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47593 * 65.00164 * 5 3 2 29 29 H 1.09006 * 109.46665 * 184.99862 * 5 3 2 30 30 H 1.08998 * 109.47421 * 300.00519 * 7 6 5 31 31 H 1.09009 * 109.46478 * 60.00425 * 7 6 5 32 32 H 1.09002 * 109.47012 * 180.02562 * 7 6 5 33 33 H 0.97000 * 120.00179 * 95.00138 * 8 3 2 34 34 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 35 35 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 36 36 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 37 37 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 38 38 H 0.96698 * 114.00190 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99594 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.36378 * 37.07938 * 24 11 9 41 41 H 1.09001 * 110.46274 * 274.80114 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6213 1.4025 -0.9314 5 6 3.0351 1.3330 1.1816 6 8 2.3183 1.0891 2.3935 7 6 3.1375 1.0934 3.5643 8 7 1.1162 2.4160 0.1203 9 6 0.5154 2.9114 -0.9797 10 8 0.7601 2.4367 -2.0720 11 7 -0.3558 3.9338 -0.8692 12 6 -0.7402 4.6002 0.3838 13 6 -1.7754 5.6873 0.0255 14 6 -2.3391 5.1959 -1.3340 15 8 -3.3584 4.2133 -1.1407 16 6 -2.8544 6.3505 -2.1541 17 1 -2.7974 7.3566 -1.7658 18 6 -3.3985 6.1222 -3.4002 19 7 -3.4673 4.8970 -3.8733 20 14 -4.0366 7.5533 -4.4171 21 1 -2.9292 8.5076 -4.6784 22 1 -4.5670 7.0458 -5.7080 23 1 -5.1205 8.2445 -3.6736 24 6 -1.0803 4.5697 -1.9845 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.7937 0.5621 1.0467 29 1 3.5154 2.3101 1.2340 30 1 3.8979 0.3172 3.4786 31 1 3.6204 2.0654 3.6663 32 1 2.5193 0.9006 4.4411 33 1 0.9212 2.7950 0.9917 34 1 0.1352 5.0590 0.8433 35 1 -1.1841 3.8766 1.0674 36 1 -2.5640 5.7314 0.7767 37 1 -1.2929 6.6587 -0.0825 38 1 -3.7411 3.8766 -1.9625 39 1 -3.8498 4.7365 -4.7502 40 1 -1.3676 3.8232 -2.7249 41 1 -0.4667 5.3437 -2.4455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332093289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -91.549390 kcal Electronic energy + Delta-G solvation = -23496.344424 eV Core-core repulsion = 19991.562761 eV Total energy + Delta-G solvation = -3504.781662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89017 -38.34739 -37.29126 -35.31900 -34.19587 -32.11444 -31.82629 -30.10368 -29.19849 -27.71474 -26.45315 -24.96790 -23.09906 -22.42166 -19.87055 -19.52764 -19.12831 -17.54659 -17.07354 -16.84866 -16.12630 -15.74324 -15.30992 -15.03238 -14.79437 -14.55749 -14.18642 -13.91483 -13.14624 -12.99504 -12.83415 -12.63864 -12.35607 -12.15271 -11.91551 -11.57718 -11.51712 -11.40960 -11.00617 -10.90170 -10.76472 -10.55056 -10.47795 -10.14459 -9.91090 -9.56548 -9.35409 -9.07412 -8.83046 -8.64884 -8.32955 -7.63216 -6.25851 -4.35612 2.59819 3.14928 3.24498 3.29703 3.31539 3.56567 3.81909 4.27545 4.51699 4.81522 4.89637 5.01123 5.08668 5.15179 5.21118 5.42708 5.45301 5.46972 5.51280 5.64388 5.70172 5.85205 6.08859 6.15451 6.20055 6.55483 6.71378 6.75163 6.84090 6.91466 6.93855 7.01723 7.17024 7.28061 7.36845 7.70882 7.77807 8.04277 8.59180 8.68862 9.19824 9.34214 9.50838 10.81285 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.004056 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.226270 B = 6901.633449 C = 7209.496064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.172 4.172 3 C 0.197 3.803 4 H 0.107 0.893 5 C 0.058 3.942 6 O -0.382 6.382 7 C 0.031 3.969 8 N -0.742 5.742 9 C 0.716 3.284 10 O -0.595 6.595 11 N -0.627 5.627 12 C 0.106 3.894 13 C -0.116 4.116 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.113 3.887 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.398 0.602 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 -5.763 11.946 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.091 3.909 4 H 0.124 0.876 5 C -0.019 4.019 6 O -0.301 6.301 7 C -0.065 4.065 8 N -0.399 5.399 9 C 0.418 3.582 10 O -0.474 6.474 11 N -0.364 5.364 12 C -0.018 4.018 13 C -0.154 4.154 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.009 4.009 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.232 0.768 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.668 -6.189 11.576 17.562 hybrid contribution -0.202 0.753 -0.707 1.052 sum 11.466 -5.436 10.869 16.708 Atomic orbital electron populations 1.23759 0.96178 1.01783 0.98413 1.23003 0.96563 0.97221 1.02341 1.19787 0.89260 0.84729 0.97126 0.87552 1.22820 0.94158 1.00379 0.84536 1.87966 1.34818 1.92948 1.14337 1.22738 0.95637 0.99918 0.88249 1.45108 1.48245 1.37512 1.09079 1.15515 0.79087 0.79502 0.84057 1.90885 1.67593 1.63105 1.25824 1.47892 1.44186 1.33901 1.10400 1.21919 0.97405 0.95466 0.86968 1.22596 0.96754 0.96671 0.99413 1.19584 0.83872 0.86376 0.89295 1.86058 1.55670 1.59966 1.37732 1.21466 1.41181 0.93601 1.01468 0.91551 1.25082 0.94536 0.96273 0.97315 1.69568 1.44759 1.19539 1.19445 0.86447 0.79256 0.82000 0.79099 1.20029 1.21075 1.20009 1.23130 0.93145 0.96248 0.88423 0.89036 0.88235 0.87199 0.91803 0.92460 0.94212 0.94149 0.89652 0.76776 0.93258 0.92605 0.90808 0.90558 0.76199 0.91820 0.90147 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 13.82 29.01 0.40 -2.18 16 2 C -0.17 -2.40 9.03 -36.02 -0.33 -2.72 16 3 C 0.20 2.67 2.92 -69.08 -0.20 2.47 16 4 H 0.11 1.53 7.58 -51.93 -0.39 1.14 16 5 C 0.06 0.59 5.67 37.16 0.21 0.80 16 6 O -0.38 -4.16 9.91 -35.23 -0.35 -4.51 16 7 C 0.03 0.23 11.01 101.05 1.11 1.35 16 8 N -0.74 -11.74 3.95 -59.82 -0.24 -11.98 16 9 C 0.72 14.77 7.07 -86.92 -0.61 14.15 16 10 O -0.60 -14.48 16.26 5.29 0.09 -14.39 16 11 N -0.63 -13.23 3.33 -176.24 -0.59 -13.81 16 12 C 0.11 1.89 6.15 -3.06 -0.02 1.87 16 13 C -0.12 -2.32 6.12 -24.90 -0.15 -2.47 16 14 C 0.25 6.10 0.89 -89.62 -0.08 6.02 16 15 O -0.58 -15.21 13.18 -35.23 -0.46 -15.67 16 16 C -0.54 -14.06 8.25 -34.44 -0.28 -14.34 16 17 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 18 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 19 N -0.89 -24.07 10.72 55.43 0.59 -23.47 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.11 2.76 5.63 -2.53 -0.01 2.74 16 25 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.10 1.84 5.91 -52.48 -0.31 1.53 16 27 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 5.70 7.37 -40.82 -0.30 5.40 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 38 H 0.39 10.44 6.93 45.56 0.32 10.76 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 41 H 0.06 1.40 8.03 -51.93 -0.42 0.99 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -30.66 338.87 -6.62 -37.28 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -5.69 Total: 16.64 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.06 Total: 9.44 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.23 Total: -49.27 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.73 Total: -34.57 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.66 -6.62 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332093289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.270 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds