Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00290 * 2 1 4 4 H 1.08998 * 109.46694 * 245.00141 * 3 2 1 5 5 C 1.52996 * 109.47048 * 124.99887 * 3 2 1 6 6 O 1.42900 * 109.47301 * 304.99433 * 5 3 2 7 7 C 1.42898 * 114.00150 * 179.97438 * 6 5 3 8 8 N 1.46496 * 109.46999 * 4.99690 * 3 2 1 9 9 C 1.34778 * 119.99967 * 275.00393 * 8 3 2 10 10 O 1.21585 * 119.99945 * 359.97438 * 9 8 3 11 11 N 1.34774 * 120.00134 * 180.02562 * 9 8 3 12 12 C 1.47031 * 125.64691 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26879 * 181.01415 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 O 1.42897 * 111.00579 * 82.57426 * 14 13 12 16 16 C 1.50708 * 110.99876 * 206.38340 * 14 13 12 17 17 H 1.07995 * 120.00149 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99534 * 180.02562 * 16 14 13 19 19 N 1.31519 * 120.00164 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99936 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47324 * 59.99299 * 20 18 16 22 22 H 1.48498 * 109.47370 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47013 * 299.99548 * 20 18 16 24 24 C 1.47422 * 125.65171 * 179.97438 * 11 9 8 25 25 H 1.07993 * 120.00310 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99585 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99585 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47593 * 65.00164 * 5 3 2 29 29 H 1.09006 * 109.46665 * 184.99862 * 5 3 2 30 30 H 1.08998 * 109.47421 * 300.00519 * 7 6 5 31 31 H 1.09009 * 109.46478 * 60.00425 * 7 6 5 32 32 H 1.09002 * 109.47012 * 180.02562 * 7 6 5 33 33 H 0.97000 * 120.00179 * 95.00138 * 8 3 2 34 34 H 1.08998 * 109.88059 * 61.59780 * 12 11 9 35 35 H 1.08994 * 109.87878 * 300.43060 * 12 11 9 36 36 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 37 37 H 1.08997 * 110.72099 * 263.64813 * 13 12 11 38 38 H 0.96698 * 114.00190 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99594 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.36378 * 37.07938 * 24 11 9 41 41 H 1.09001 * 110.46274 * 274.80114 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6213 1.4025 -0.9314 5 6 3.0351 1.3330 1.1816 6 8 2.3183 1.0891 2.3935 7 6 3.1375 1.0934 3.5643 8 7 1.1162 2.4160 0.1203 9 6 0.5154 2.9114 -0.9797 10 8 0.7601 2.4367 -2.0720 11 7 -0.3558 3.9338 -0.8692 12 6 -0.7402 4.6002 0.3838 13 6 -1.7754 5.6873 0.0255 14 6 -2.3391 5.1959 -1.3340 15 8 -3.3584 4.2133 -1.1407 16 6 -2.8544 6.3505 -2.1541 17 1 -2.7974 7.3566 -1.7658 18 6 -3.3985 6.1222 -3.4002 19 7 -3.4673 4.8970 -3.8733 20 14 -4.0366 7.5533 -4.4171 21 1 -2.9292 8.5076 -4.6784 22 1 -4.5670 7.0458 -5.7080 23 1 -5.1205 8.2445 -3.6736 24 6 -1.0803 4.5697 -1.9845 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.7937 0.5621 1.0467 29 1 3.5154 2.3101 1.2340 30 1 3.8979 0.3172 3.4786 31 1 3.6204 2.0654 3.6663 32 1 2.5193 0.9006 4.4411 33 1 0.9212 2.7950 0.9917 34 1 0.1352 5.0590 0.8433 35 1 -1.1841 3.8766 1.0674 36 1 -2.5640 5.7314 0.7767 37 1 -1.2929 6.6587 -0.0825 38 1 -3.7411 3.8766 -1.9625 39 1 -3.8498 4.7365 -4.7502 40 1 -1.3676 3.8232 -2.7249 41 1 -0.4667 5.3437 -2.4455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332093289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -115.136803 kcal Electronic energy + Delta-G solvation = -23497.367251 eV Core-core repulsion = 19991.562761 eV Total energy + Delta-G solvation = -3505.804489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41811 -39.58199 -38.68445 -36.59028 -36.04769 -34.14326 -33.22019 -31.64364 -30.32608 -29.47980 -27.25358 -26.72727 -24.41577 -23.74688 -21.48816 -21.20829 -20.40483 -19.27745 -18.85198 -17.82510 -17.26290 -17.03951 -16.78483 -16.35165 -16.25740 -16.12795 -15.67472 -15.02786 -14.80655 -14.69184 -14.60948 -13.81036 -13.67664 -13.48138 -13.28601 -13.08048 -12.98479 -12.79949 -12.52073 -12.31963 -12.30829 -12.23036 -12.09164 -11.94960 -11.32226 -11.19999 -10.63355 -10.57970 -10.35251 -10.23355 -10.20618 -9.32733 -8.24453 -6.42010 1.42833 1.44931 1.45077 1.53651 1.69706 2.18138 2.39161 2.84157 3.01504 3.11275 3.81373 3.83965 4.01159 4.13120 4.19250 4.33950 4.36767 4.44237 4.52883 4.57960 4.62978 4.64595 4.67906 4.76872 4.95579 4.99820 5.05376 5.10139 5.30853 5.39246 5.44477 5.45609 5.67079 5.77510 5.97271 6.03401 6.19485 6.26757 6.65260 7.08223 7.30909 7.40223 7.60166 8.81004 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.004056 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.226270 B = 6901.633449 C = 7209.496064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.186 3.814 4 H 0.099 0.901 5 C 0.068 3.932 6 O -0.407 6.407 7 C 0.027 3.973 8 N -0.722 5.722 9 C 0.713 3.287 10 O -0.640 6.640 11 N -0.634 5.634 12 C 0.109 3.891 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.591 6.591 16 C -0.557 4.557 17 H 0.072 0.928 18 C 0.025 3.975 19 N -0.919 5.919 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.128 3.872 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.141 0.859 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.408 0.592 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.376 0.624 39 H 0.270 0.730 40 H 0.036 0.964 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -5.327 13.921 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C 0.081 3.919 4 H 0.116 0.884 5 C -0.009 4.009 6 O -0.326 6.326 7 C -0.069 4.069 8 N -0.378 5.378 9 C 0.415 3.585 10 O -0.522 6.522 11 N -0.370 5.370 12 C -0.013 4.013 13 C -0.148 4.148 14 C 0.192 3.808 15 O -0.400 6.400 16 C -0.596 4.596 17 H 0.090 0.910 18 C -0.176 4.176 19 N -0.559 5.559 20 Si 0.792 3.208 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.193 1.193 24 C 0.004 3.996 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.244 0.756 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.280 -5.751 13.635 19.883 hybrid contribution -0.646 0.567 -1.281 1.542 sum 12.634 -5.183 12.354 18.415 Atomic orbital electron populations 1.23691 0.97025 1.00965 1.01477 1.23337 0.96102 0.98620 0.99503 1.20110 0.89258 0.83632 0.98925 0.88365 1.22739 0.93042 1.02161 0.82951 1.87925 1.36234 1.93199 1.15254 1.22905 0.95845 1.01054 0.87112 1.44961 1.47457 1.37411 1.07985 1.15694 0.79012 0.79206 0.84555 1.90844 1.69044 1.64405 1.27922 1.47840 1.44176 1.34421 1.10571 1.22077 0.98558 0.95082 0.85625 1.22600 0.97430 0.97899 0.96893 1.19854 0.83248 0.85709 0.92017 1.86050 1.56246 1.60536 1.37167 1.21824 1.41363 0.94329 1.02046 0.91009 1.25866 0.94784 0.98497 0.98443 1.69695 1.45328 1.21270 1.19574 0.85467 0.78793 0.79089 0.77438 1.19415 1.21181 1.19324 1.22664 0.93626 0.94660 0.88649 0.87788 0.91453 0.84175 0.89026 0.91232 0.92801 0.93134 0.89082 0.75584 0.89231 0.91554 0.89807 0.89058 0.77292 0.92019 0.94562 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.11 13.82 67.78 0.94 -5.17 16 2 C -0.16 -4.13 9.03 25.65 0.23 -3.90 16 3 C 0.19 4.73 2.92 44.25 0.13 4.86 16 4 H 0.10 2.73 7.58 -2.39 -0.02 2.71 16 5 C 0.07 1.14 5.67 71.98 0.41 1.55 16 6 O -0.41 -7.62 9.91 -148.98 -1.48 -9.10 16 7 C 0.03 0.31 11.01 113.37 1.25 1.56 16 8 N -0.72 -22.09 3.95 -461.42 -1.82 -23.91 16 9 C 0.71 29.68 7.07 179.05 1.27 30.95 16 10 O -0.64 -32.16 16.26 -3.98 -0.06 -32.22 16 11 N -0.63 -26.85 3.33 -829.75 -2.76 -29.61 16 12 C 0.11 3.68 6.15 86.73 0.53 4.21 16 13 C -0.11 -4.24 6.12 31.78 0.19 -4.05 16 14 C 0.23 11.49 0.89 -10.15 -0.01 11.48 16 15 O -0.59 -31.57 13.18 -148.98 -1.96 -33.54 16 16 C -0.56 -29.28 8.25 25.60 0.21 -29.07 16 17 H 0.07 3.60 7.76 -2.91 -0.02 3.57 16 18 C 0.02 1.30 5.30 84.65 0.45 1.75 16 19 N -0.92 -51.12 10.72 21.45 0.23 -50.89 16 20 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.13 6.47 5.63 86.85 0.49 6.96 16 25 H 0.10 2.90 8.06 -2.91 -0.02 2.88 16 26 H 0.07 2.55 5.91 -2.91 -0.02 2.54 16 27 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.41 10.88 7.37 -92.71 -0.68 10.19 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.09 3.21 8.02 -2.39 -0.02 3.19 16 38 H 0.38 21.32 6.93 -74.06 -0.51 20.80 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.04 2.12 7.64 -2.39 -0.02 2.10 16 41 H 0.04 2.21 8.03 -2.39 -0.02 2.19 16 Total: -1.00 -69.06 338.87 0.09 -68.97 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.16 Total: 45.10 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.09 Total: 21.13 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.35 Total: -104.42 kcal Atomic # 8 Polarization: -71.35 SS G_CDS: -3.51 Total: -74.86 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -69.06 0.09 -68.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332093289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.171 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds