Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47608 * 2 1 4 4 N 1.41599 * 114.00497 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99687 * 270.00524 * 4 3 2 6 6 C 1.53006 * 109.46985 * 254.99330 * 5 4 3 7 7 C 1.34778 * 120.00011 * 90.00094 * 4 3 2 8 8 O 1.21350 * 119.99875 * 180.02562 * 7 4 3 9 9 C 1.49446 * 119.99726 * 0.02562 * 7 4 3 10 10 O 1.21347 * 120.00244 * 0.69021 * 9 7 4 11 11 N 1.34775 * 119.99525 * 180.41746 * 9 7 4 12 12 C 1.46506 * 119.99981 * 186.15459 * 11 9 7 13 13 C 1.52999 * 109.47115 * 183.53225 * 12 11 9 14 14 C 1.50694 * 115.54897 * 306.36020 * 13 12 11 15 15 H 1.08002 * 120.00251 * 145.14352 * 14 13 12 16 16 C 1.37877 * 120.00355 * 325.13336 * 14 13 12 17 17 N 1.31514 * 119.99959 * 349.46166 * 16 14 13 18 18 Si 1.86801 * 120.00307 * 169.45117 * 16 14 13 19 19 H 1.48496 * 109.46971 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46678 * 120.00439 * 18 16 14 21 21 H 1.48497 * 109.47184 * 240.00505 * 18 16 14 22 22 C 1.52996 * 117.49631 * 160.69093 * 13 12 11 23 23 C 1.53000 * 117.49901 * 92.03309 * 13 12 11 24 24 H 1.09000 * 109.46633 * 300.00039 * 1 2 3 25 25 H 1.09001 * 109.46820 * 59.99630 * 1 2 3 26 26 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47119 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46820 * 120.00370 * 2 1 3 29 29 H 1.08995 * 109.47242 * 14.99620 * 5 4 3 30 30 H 1.09006 * 109.47207 * 134.99825 * 5 4 3 31 31 H 1.08998 * 109.47075 * 60.00129 * 6 5 4 32 32 H 1.08994 * 109.47187 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47137 * 300.00530 * 6 5 4 34 34 H 0.97006 * 120.00447 * 6.14985 * 11 9 7 35 35 H 1.09004 * 109.46698 * 303.52939 * 12 11 9 36 36 H 1.08992 * 109.46981 * 63.52877 * 12 11 9 37 37 H 0.96998 * 120.00451 * 185.02331 * 17 16 14 38 38 H 1.08996 * 117.50517 * 359.97438 * 22 13 12 39 39 H 1.09002 * 117.49999 * 145.02069 * 22 13 12 40 40 H 1.09007 * 117.49480 * 214.97890 * 23 13 12 41 41 H 1.09000 * 117.49987 * 359.96886 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 4.1487 1.5165 1.2679 6 6 4.6155 2.9511 1.5230 7 6 4.0893 1.5124 -1.1681 8 8 5.2991 1.6077 -1.1685 9 6 3.3438 1.4542 -2.4620 10 8 2.1331 1.3715 -2.4615 11 7 4.0157 1.4991 -3.6294 12 6 3.2814 1.5782 -4.8947 13 6 4.2695 1.5275 -6.0618 14 6 5.3827 2.5421 -6.0153 15 1 6.3637 2.2848 -6.3868 16 6 5.1490 3.7989 -5.4988 17 7 3.9189 4.1850 -5.2395 18 14 6.5797 4.9533 -5.1670 19 1 7.8519 4.2852 -5.5417 20 1 6.4147 6.1901 -5.9721 21 1 6.6097 5.3023 -3.7240 22 6 3.7191 1.1450 -7.4371 23 6 4.5887 0.1551 -6.6580 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.4942 1.1977 2.0790 30 1 5.0146 0.8561 1.2188 31 1 3.7497 3.6116 1.5721 32 1 5.1595 2.9939 2.4665 33 1 5.2700 3.2699 0.7117 34 1 4.9856 1.4792 -3.6319 35 1 2.5905 0.7382 -4.9668 36 1 2.7222 2.5129 -4.9323 37 1 3.7474 5.0933 -4.9454 38 1 2.6533 0.9290 -7.5105 39 1 4.1625 1.6269 -8.3085 40 1 5.6040 -0.0137 -7.0171 41 1 4.0953 -0.7117 -6.2185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333035824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -36.400660 kcal Electronic energy + Delta-G solvation = -23649.235504 eV Core-core repulsion = 20146.845270 eV Total energy + Delta-G solvation = -3502.390234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15684 -38.16435 -37.38995 -36.62593 -34.28470 -33.06637 -32.17507 -31.30930 -29.32450 -26.74651 -25.55271 -24.31533 -23.01438 -21.67133 -21.18799 -19.78069 -19.35829 -18.20598 -16.87878 -16.36002 -15.81472 -15.69599 -15.13124 -14.82522 -14.65258 -14.46674 -14.10305 -13.80155 -13.45410 -13.05592 -12.77538 -12.68906 -12.49058 -12.16538 -12.03304 -11.78275 -11.58472 -11.51393 -11.21140 -11.03880 -10.95382 -10.77371 -10.50528 -10.28171 -10.10022 -9.62000 -9.17154 -9.04474 -8.89583 -8.84078 -8.29557 -7.96820 -6.08775 -4.18162 1.81614 1.95865 3.24783 3.35570 3.37688 3.38472 3.87723 4.32051 4.63702 4.91912 4.93923 5.03044 5.11304 5.18243 5.26903 5.29636 5.38010 5.48518 5.56006 5.78143 5.86781 5.91285 5.97294 6.13668 6.22063 6.26337 6.41881 6.50622 6.56744 6.65614 6.84757 7.01607 7.22524 7.27367 7.43631 7.51500 7.88359 7.89739 8.29100 8.38878 8.80295 8.86145 9.43616 10.88616 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.005978 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.480755 B = 4683.097338 C = 5789.631913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 O -0.116 6.116 4 N -0.464 5.464 5 C 0.117 3.883 6 C -0.170 4.170 7 C 0.516 3.484 8 O -0.505 6.505 9 C 0.493 3.507 10 O -0.524 6.524 11 N -0.654 5.654 12 C 0.161 3.839 13 C 0.035 3.965 14 C -0.499 4.499 15 H 0.064 0.936 16 C 0.076 3.924 17 N -0.870 5.870 18 Si 0.891 3.109 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.280 1.280 22 C -0.193 4.193 23 C -0.211 4.211 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.411 0.589 35 H 0.033 0.967 36 H 0.114 0.886 37 H 0.264 0.736 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -6.792 12.088 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 O -0.122 6.122 4 N -0.242 5.242 5 C -0.003 4.003 6 C -0.228 4.228 7 C 0.300 3.700 8 O -0.379 6.379 9 C 0.271 3.729 10 O -0.402 6.402 11 N -0.303 5.303 12 C 0.039 3.961 13 C 0.034 3.966 14 C -0.536 4.536 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.506 5.506 18 Si 0.718 3.282 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.206 1.206 22 C -0.232 4.232 23 C -0.249 4.249 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.051 0.949 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.398 -6.455 12.192 14.208 hybrid contribution 1.081 0.443 0.119 1.174 sum -2.318 -6.012 12.312 13.896 Atomic orbital electron populations 1.21638 0.92269 1.02479 1.03555 1.22963 0.96134 0.85126 1.00475 1.90760 0.99523 1.25223 1.96657 1.49914 0.96485 1.72101 1.05709 1.21732 0.95861 0.98868 0.83882 1.22140 1.02192 0.95981 1.02514 1.21010 0.87164 0.76645 0.85139 1.90774 1.13062 1.47776 1.86245 1.19588 0.87750 0.80838 0.84727 1.90700 1.13038 1.49445 1.86994 1.45698 1.11713 1.68046 1.04891 1.21177 0.93144 1.01931 0.79887 1.19183 0.96131 0.91739 0.89521 1.20524 0.95247 0.96413 1.41409 0.91806 1.24971 0.95650 0.97992 0.94271 1.69824 1.18591 1.17803 1.44338 0.86539 0.82737 0.80602 0.78304 1.19520 1.20983 1.20608 1.22919 0.96716 1.04902 0.98635 1.22972 0.99570 0.94234 1.08084 0.92089 0.90714 0.90828 0.92103 0.93438 0.89403 0.89778 0.91919 0.91153 0.91275 0.75283 0.94913 0.86822 0.92608 0.91458 0.90090 0.90489 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.03 0.41 6.43 37.16 0.24 0.65 16 3 O -0.12 -1.90 9.40 -33.90 -0.32 -2.22 16 4 N -0.46 -7.54 3.02 -60.73 -0.18 -7.73 16 5 C 0.12 1.42 6.38 -4.04 -0.03 1.40 16 6 C -0.17 -2.05 10.04 37.16 0.37 -1.68 16 7 C 0.52 9.99 7.62 -11.59 -0.09 9.90 16 8 O -0.50 -10.30 15.57 5.50 0.09 -10.21 16 9 C 0.49 10.60 7.86 -11.59 -0.09 10.50 16 10 O -0.52 -11.78 13.80 -16.93 -0.23 -12.01 16 11 N -0.65 -14.65 5.26 -60.73 -0.32 -14.97 16 12 C 0.16 3.77 4.75 -4.04 -0.02 3.76 16 13 C 0.04 0.83 2.00 -155.67 -0.31 0.52 16 14 C -0.50 -12.85 8.28 -34.44 -0.29 -13.14 16 15 H 0.06 1.66 7.84 -52.49 -0.41 1.24 16 16 C 0.08 1.98 5.13 -17.82 -0.09 1.89 16 17 N -0.87 -23.47 10.74 55.43 0.60 -22.88 16 18 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.19 -4.20 9.96 -26.70 -0.27 -4.47 16 23 C -0.21 -4.39 9.92 -26.70 -0.26 -4.66 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.02 7.34 -51.93 -0.38 0.64 16 34 H 0.41 9.31 7.42 -40.82 -0.30 9.01 16 35 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.11 3.01 6.03 -51.93 -0.31 2.70 16 37 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -28.89 347.27 -7.02 -35.92 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.41 Total: 9.62 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.45 Total: 3.50 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.09 Total: -45.57 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.47 Total: -24.44 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.89 -7.02 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333035824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds