Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47608 * 2 1 4 4 N 1.41599 * 114.00497 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99687 * 270.00524 * 4 3 2 6 6 C 1.53006 * 109.46985 * 254.99330 * 5 4 3 7 7 C 1.34778 * 120.00011 * 90.00094 * 4 3 2 8 8 O 1.21350 * 119.99875 * 180.02562 * 7 4 3 9 9 C 1.49446 * 119.99726 * 0.02562 * 7 4 3 10 10 O 1.21347 * 120.00244 * 0.69021 * 9 7 4 11 11 N 1.34775 * 119.99525 * 180.41746 * 9 7 4 12 12 C 1.46506 * 119.99981 * 186.15459 * 11 9 7 13 13 C 1.52999 * 109.47115 * 183.53225 * 12 11 9 14 14 C 1.50694 * 115.54897 * 306.36020 * 13 12 11 15 15 H 1.08002 * 120.00251 * 145.14352 * 14 13 12 16 16 C 1.37877 * 120.00355 * 325.13336 * 14 13 12 17 17 N 1.31514 * 119.99959 * 349.46166 * 16 14 13 18 18 Si 1.86801 * 120.00307 * 169.45117 * 16 14 13 19 19 H 1.48496 * 109.46971 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46678 * 120.00439 * 18 16 14 21 21 H 1.48497 * 109.47184 * 240.00505 * 18 16 14 22 22 C 1.52996 * 117.49631 * 160.69093 * 13 12 11 23 23 C 1.53000 * 117.49901 * 92.03309 * 13 12 11 24 24 H 1.09000 * 109.46633 * 300.00039 * 1 2 3 25 25 H 1.09001 * 109.46820 * 59.99630 * 1 2 3 26 26 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47119 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46820 * 120.00370 * 2 1 3 29 29 H 1.08995 * 109.47242 * 14.99620 * 5 4 3 30 30 H 1.09006 * 109.47207 * 134.99825 * 5 4 3 31 31 H 1.08998 * 109.47075 * 60.00129 * 6 5 4 32 32 H 1.08994 * 109.47187 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47137 * 300.00530 * 6 5 4 34 34 H 0.97006 * 120.00447 * 6.14985 * 11 9 7 35 35 H 1.09004 * 109.46698 * 303.52939 * 12 11 9 36 36 H 1.08992 * 109.46981 * 63.52877 * 12 11 9 37 37 H 0.96998 * 120.00451 * 185.02331 * 17 16 14 38 38 H 1.08996 * 117.50517 * 359.97438 * 22 13 12 39 39 H 1.09002 * 117.49999 * 145.02069 * 22 13 12 40 40 H 1.09007 * 117.49480 * 214.97890 * 23 13 12 41 41 H 1.09000 * 117.49987 * 359.96886 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 4.1487 1.5165 1.2679 6 6 4.6155 2.9511 1.5230 7 6 4.0893 1.5124 -1.1681 8 8 5.2991 1.6077 -1.1685 9 6 3.3438 1.4542 -2.4620 10 8 2.1331 1.3715 -2.4615 11 7 4.0157 1.4991 -3.6294 12 6 3.2814 1.5782 -4.8947 13 6 4.2695 1.5275 -6.0618 14 6 5.3827 2.5421 -6.0153 15 1 6.3637 2.2848 -6.3868 16 6 5.1490 3.7989 -5.4988 17 7 3.9189 4.1850 -5.2395 18 14 6.5797 4.9533 -5.1670 19 1 7.8519 4.2852 -5.5417 20 1 6.4147 6.1901 -5.9721 21 1 6.6097 5.3023 -3.7240 22 6 3.7191 1.1450 -7.4371 23 6 4.5887 0.1551 -6.6580 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.4942 1.1977 2.0790 30 1 5.0146 0.8561 1.2188 31 1 3.7497 3.6116 1.5721 32 1 5.1595 2.9939 2.4665 33 1 5.2700 3.2699 0.7117 34 1 4.9856 1.4792 -3.6319 35 1 2.5905 0.7382 -4.9668 36 1 2.7222 2.5129 -4.9323 37 1 3.7474 5.0933 -4.9454 38 1 2.6533 0.9290 -7.5105 39 1 4.1625 1.6269 -8.3085 40 1 5.6040 -0.0137 -7.0171 41 1 4.0953 -0.7117 -6.2185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333035824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -53.312836 kcal Electronic energy + Delta-G solvation = -23649.968871 eV Core-core repulsion = 20146.845270 eV Total energy + Delta-G solvation = -3503.123601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67052 -39.78265 -38.71982 -38.38435 -35.46830 -34.77412 -34.14778 -32.32721 -30.52627 -28.46423 -27.49826 -25.69679 -24.04068 -23.10384 -22.79886 -21.25249 -21.12128 -19.83404 -18.28946 -18.11481 -17.31491 -17.09486 -16.70652 -16.52070 -16.09702 -15.96346 -15.43745 -15.27948 -14.95167 -14.66141 -14.39057 -13.80880 -13.59138 -13.55708 -13.41797 -13.12954 -13.10397 -12.93457 -12.70070 -12.63724 -12.45803 -12.30638 -12.08209 -12.05381 -11.46105 -11.23061 -11.09675 -10.69135 -10.50461 -10.31283 -10.14958 -9.79875 -8.06822 -6.20592 0.31932 0.64001 1.37299 1.44613 1.51712 1.84085 2.25448 2.39193 2.97460 3.30585 3.65021 3.76810 4.01703 4.08257 4.15064 4.21548 4.22238 4.37098 4.41862 4.49840 4.64575 4.70407 4.75873 4.81267 4.93692 4.96859 4.98616 5.07116 5.16699 5.25394 5.26652 5.27553 5.48428 5.57671 5.60009 5.88922 6.00810 6.34588 6.44135 6.68834 6.83319 7.12480 7.42369 8.88221 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.005978 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.480755 B = 4683.097338 C = 5789.631913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 O -0.136 6.136 4 N -0.454 5.454 5 C 0.110 3.890 6 C -0.167 4.167 7 C 0.514 3.486 8 O -0.522 6.522 9 C 0.486 3.514 10 O -0.538 6.538 11 N -0.658 5.658 12 C 0.174 3.826 13 C 0.002 3.998 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.039 3.961 17 N -0.893 5.893 18 Si 0.940 3.060 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.289 1.289 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.408 0.592 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -7.969 13.628 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 O -0.142 6.142 4 N -0.232 5.232 5 C -0.008 4.008 6 C -0.225 4.225 7 C 0.298 3.702 8 O -0.399 6.399 9 C 0.266 3.734 10 O -0.417 6.417 11 N -0.307 5.307 12 C 0.051 3.949 13 C 0.002 3.998 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.163 4.163 17 N -0.530 5.530 18 Si 0.766 3.234 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.215 1.215 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.055 0.945 34 H 0.244 0.756 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.286 -7.645 13.753 16.074 hybrid contribution 0.978 0.756 -0.319 1.276 sum -2.308 -6.889 13.434 15.273 Atomic orbital electron populations 1.21664 0.90655 1.04076 1.02995 1.23192 0.97354 0.83663 1.00930 1.90737 0.99239 1.27442 1.96741 1.50012 0.96865 1.70290 1.05989 1.22136 0.96613 0.99289 0.82775 1.22126 1.01677 0.95642 1.03015 1.20525 0.86891 0.77473 0.85342 1.90761 1.13379 1.49160 1.86582 1.20082 0.87810 0.79998 0.85513 1.90679 1.13680 1.49844 1.87463 1.45667 1.11461 1.68497 1.05069 1.20863 0.93060 1.00360 0.80596 1.19247 0.96543 0.93494 0.90564 1.20711 0.95574 0.96960 1.40969 0.92371 1.25500 0.97147 0.99228 0.94453 1.69964 1.19819 1.17694 1.45476 0.85774 0.80940 0.79252 0.77411 1.18818 1.20733 1.21538 1.22923 0.97709 1.04888 0.97304 1.22972 0.99887 0.93386 1.06081 0.90539 0.93317 0.88146 0.94292 0.90221 0.85730 0.88821 0.92429 0.87688 0.94483 0.75578 0.94328 0.90105 0.93125 0.90204 0.90476 0.89850 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 10.28 71.98 0.74 -2.00 16 2 C 0.03 0.64 6.43 71.98 0.46 1.10 16 3 O -0.14 -4.29 9.40 -17.34 -0.16 -4.45 16 4 N -0.45 -14.28 3.02 -464.40 -1.40 -15.68 16 5 C 0.11 2.41 6.38 86.38 0.55 2.96 16 6 C -0.17 -3.72 10.04 71.98 0.72 -3.00 16 7 C 0.51 19.94 7.62 87.27 0.67 20.60 16 8 O -0.52 -21.43 15.57 -3.25 -0.05 -21.48 16 9 C 0.49 21.28 7.86 87.27 0.69 21.96 16 10 O -0.54 -24.64 13.80 18.21 0.25 -24.39 16 11 N -0.66 -29.99 5.26 -464.41 -2.44 -32.43 16 12 C 0.17 8.28 4.75 86.38 0.41 8.69 16 13 C 0.00 0.10 2.00 -52.93 -0.11 0.00 16 14 C -0.50 -26.08 8.28 25.60 0.21 -25.87 16 15 H 0.06 3.01 7.84 -2.91 -0.02 2.98 16 16 C 0.04 2.04 5.13 84.65 0.43 2.47 16 17 N -0.89 -49.24 10.74 21.45 0.23 -49.01 16 18 Si 0.94 43.02 29.55 68.60 2.03 45.05 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C -0.19 -8.06 9.96 30.62 0.30 -7.75 16 23 C -0.19 -7.43 9.92 30.62 0.30 -7.12 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.13 7.48 -2.39 -0.02 1.11 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.93 7.90 -2.38 -0.02 1.92 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.06 7.34 -2.39 -0.02 1.05 16 34 H 0.41 18.86 7.42 -92.70 -0.69 18.17 16 35 H 0.04 1.75 8.06 -2.38 -0.02 1.73 16 36 H 0.08 4.42 6.03 -2.39 -0.01 4.40 16 37 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 41 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -62.87 347.27 4.18 -58.69 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.34 Total: 31.64 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.39 Total: 12.05 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.62 Total: -97.12 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: 0.04 Total: -50.32 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.87 4.18 -58.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333035824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.379 kcal (2) G-P(sol) polarization free energy of solvation -62.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds