Wall clock time and date at job start Tue Mar 31 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41594 * 114.00492 * 2 1 4 4 C 1.34771 * 120.00614 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99628 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00356 * 180.02562 * 4 3 2 7 7 C 1.53044 * 109.46055 * 179.97438 * 6 4 3 8 8 C 1.53191 * 109.31440 * 178.62547 * 7 6 4 9 9 N 1.46926 * 108.89109 * 54.56430 * 8 7 6 10 10 C 1.34780 * 120.62730 * 126.46248 * 9 8 7 11 11 O 1.21276 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99585 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47079 * 179.97438 * 13 12 10 15 15 H 1.07989 * 119.99604 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99892 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00262 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47457 * 89.99410 * 18 16 14 20 20 H 1.48493 * 109.47048 * 209.99892 * 18 16 14 21 21 H 1.48499 * 109.46771 * 329.99908 * 18 16 14 22 22 C 1.46957 * 118.71783 * 306.64359 * 9 8 7 23 23 C 1.53040 * 109.44920 * 59.93617 * 6 4 3 24 24 H 1.08995 * 109.47620 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46689 * 299.99956 * 1 2 3 26 26 H 1.09001 * 109.46840 * 59.99948 * 1 2 3 27 27 H 0.97007 * 119.99573 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.46215 * 299.97026 * 6 4 3 29 29 H 1.09003 * 109.49852 * 58.67812 * 7 6 4 30 30 H 1.09001 * 109.52587 * 298.59773 * 7 6 4 31 31 H 1.09002 * 109.58786 * 174.42474 * 8 7 6 32 32 H 1.08996 * 109.58870 * 294.70753 * 8 7 6 33 33 H 1.09002 * 109.47438 * 299.99718 * 12 10 9 34 34 H 1.08999 * 109.47522 * 60.00065 * 12 10 9 35 35 H 1.08997 * 109.47578 * 300.00111 * 13 12 10 36 36 H 1.09002 * 109.46912 * 60.00365 * 13 12 10 37 37 H 0.96999 * 120.00646 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46843 * 293.57352 * 22 9 8 39 39 H 1.08997 * 109.71602 * 173.28846 * 22 9 8 40 40 H 1.08995 * 109.49643 * 301.32932 * 23 6 4 41 41 H 1.08996 * 109.49892 * 61.43126 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 3.3454 1.4344 -0.0005 5 8 4.0582 0.4531 -0.0005 6 6 3.9584 2.8110 0.0001 7 6 5.4840 2.6898 -0.0001 8 6 6.1035 4.0905 -0.0341 9 7 5.5610 4.8779 1.0814 10 6 6.3853 5.4909 1.9539 11 8 7.5871 5.3959 1.8221 12 6 5.8134 6.2945 3.0933 13 6 6.9545 6.8795 3.9280 14 6 6.3826 7.6837 5.0671 15 1 5.3125 7.7686 5.1841 16 6 7.2258 8.3109 5.9596 17 7 6.7269 9.0122 6.9539 18 14 9.0770 8.1645 5.7565 19 1 9.5697 9.2702 4.8963 20 1 9.7289 8.2453 7.0883 21 1 9.4040 6.8617 5.1235 22 6 4.1025 4.9807 1.2295 23 6 3.5058 3.5698 1.2497 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4349 2.0783 0.0004 28 1 3.6367 3.3522 -0.8897 29 1 5.8044 2.1290 -0.8781 30 1 5.8083 2.1704 0.9017 31 1 7.1863 4.0137 0.0653 32 1 5.8570 4.5762 -0.9782 33 1 5.2015 7.1043 2.6957 34 1 5.1988 5.6490 3.7207 35 1 7.5661 6.0696 4.3256 36 1 7.5695 7.5250 3.3008 37 1 7.3200 9.4538 7.5816 38 1 3.6906 5.5400 0.3895 39 1 3.8628 5.4921 2.1617 40 1 2.4179 3.6354 1.2614 41 1 3.8486 3.0423 2.1397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333104621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:14 Heat of formation + Delta-G solvation = -75.805446 kcal Electronic energy + Delta-G solvation = -22471.334689 eV Core-core repulsion = 18967.235735 eV Total energy + Delta-G solvation = -3504.098953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56562 -39.44550 -37.72136 -36.84016 -33.58841 -33.43898 -32.37329 -31.48364 -30.81898 -27.35010 -26.65456 -25.36603 -23.41657 -22.29022 -21.09194 -20.22054 -18.80780 -18.49938 -17.56321 -17.14008 -16.23339 -16.05378 -15.52115 -15.38539 -15.13861 -14.84645 -14.41346 -14.22828 -14.03175 -13.85107 -13.31522 -13.15929 -12.69282 -12.57579 -12.53176 -12.34142 -11.97577 -11.67688 -11.49786 -11.40927 -11.03907 -10.97422 -10.92427 -10.16085 -10.10270 -10.03617 -9.78164 -9.30317 -9.23983 -9.14741 -8.57821 -8.50214 -6.03514 -4.02270 1.51505 2.30534 3.05471 3.15480 3.38357 3.45118 3.56425 4.04463 4.19641 4.33393 4.38202 4.51130 4.64831 4.68293 4.80090 4.83898 5.01036 5.04461 5.07949 5.26217 5.32256 5.36741 5.42503 5.52292 5.65036 5.79749 5.89784 6.02519 6.04974 6.09893 6.36646 6.58808 6.70000 6.87053 7.36208 7.43307 7.58967 7.78892 7.91814 8.48148 8.60320 8.99096 9.59806 11.09259 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003132 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.864592 B = 8938.680138 C = 9498.687096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.150 6.150 3 N -0.602 5.602 4 C 0.529 3.471 5 O -0.517 6.517 6 C -0.091 4.091 7 C -0.114 4.114 8 C 0.111 3.889 9 N -0.625 5.625 10 C 0.513 3.487 11 O -0.537 6.537 12 C -0.121 4.121 13 C 0.001 3.999 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.110 3.890 23 C -0.131 4.131 24 H 0.111 0.889 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.406 0.594 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 -13.185 -17.511 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.153 6.153 3 N -0.306 5.306 4 C 0.316 3.684 5 O -0.390 6.390 6 C -0.113 4.113 7 C -0.152 4.152 8 C -0.012 4.012 9 N -0.361 5.361 10 C 0.304 3.696 11 O -0.413 6.413 12 C -0.161 4.161 13 C -0.037 4.037 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.013 4.013 23 C -0.169 4.169 24 H 0.129 0.871 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.247 0.753 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.723 -14.038 -17.412 26.240 hybrid contribution -0.029 0.294 -0.045 0.299 sum -13.752 -13.744 -17.457 26.129 Atomic orbital electron populations 1.23295 0.80510 1.04663 1.01291 1.90600 1.20106 1.07246 1.97316 1.47790 1.05760 0.98476 1.78587 1.20954 0.79498 0.92167 0.75789 1.90746 1.60128 1.40230 1.47934 1.21330 0.97679 0.91175 1.01139 1.21789 0.91427 0.97480 1.04547 1.21527 1.00681 0.89810 0.89173 1.48290 1.06349 1.52322 1.29175 1.21561 0.86681 0.78608 0.82755 1.90647 1.15274 1.61439 1.73941 1.21693 1.01734 0.98589 0.94069 1.19385 0.93305 0.96320 0.94710 1.21099 0.95151 1.30510 1.09484 0.90961 1.24968 0.98903 0.94544 0.94810 1.69905 1.35396 1.33399 1.15574 0.86800 0.85832 0.79694 0.77274 1.20238 1.21454 1.18492 1.21690 0.80180 0.95688 1.03767 1.22026 1.00719 0.96744 0.97438 0.87134 0.92467 0.92620 0.75344 0.87721 0.89856 0.90346 0.88486 0.91734 0.89626 0.89626 0.95820 0.96270 0.92714 0.91156 0.88224 0.90305 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 11.30 101.05 1.14 1.14 16 2 O -0.15 -1.46 11.47 -29.66 -0.34 -1.80 16 3 N -0.60 -4.88 6.27 31.22 0.20 -4.68 16 4 C 0.53 5.63 7.30 -10.99 -0.08 5.55 16 5 O -0.52 -8.07 16.39 -12.64 -0.21 -8.28 16 6 C -0.09 -0.73 2.49 -91.73 -0.23 -0.95 16 7 C -0.11 -1.17 4.65 -26.61 -0.12 -1.30 16 8 C 0.11 1.26 6.43 -3.71 -0.02 1.24 16 9 N -0.63 -8.14 2.98 -172.74 -0.51 -8.65 16 10 C 0.51 9.22 7.70 -10.98 -0.08 9.14 16 11 O -0.54 -11.84 15.39 5.56 0.09 -11.76 16 12 C -0.12 -2.28 3.99 -27.88 -0.11 -2.39 16 13 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 22 C 0.11 0.98 6.33 -3.69 -0.02 0.96 16 23 C -0.13 -0.96 5.27 -26.61 -0.14 -1.10 16 24 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.41 1.65 7.94 -40.82 -0.32 1.32 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.10 1.32 7.01 -51.93 -0.36 0.96 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.46 7.95 -51.93 -0.41 1.05 16 34 H 0.09 1.48 7.69 -51.93 -0.40 1.09 16 35 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 36 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.91 5.95 -51.93 -0.31 0.60 16 40 H 0.08 0.33 7.52 -51.93 -0.39 -0.06 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -38.60 336.83 -6.15 -44.74 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.35 Total: -4.44 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.20 Total: -1.03 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.45 Total: -40.41 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.46 Total: -21.84 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -38.60 -6.15 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333104621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.061 kcal (2) G-P(sol) polarization free energy of solvation -38.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds