Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41594 * 114.00492 * 2 1 4 4 C 1.34771 * 120.00614 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99628 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00356 * 180.02562 * 4 3 2 7 7 C 1.53044 * 109.46055 * 179.97438 * 6 4 3 8 8 C 1.53191 * 109.31440 * 178.62547 * 7 6 4 9 9 N 1.46926 * 108.89109 * 54.56430 * 8 7 6 10 10 C 1.34780 * 120.62730 * 126.46248 * 9 8 7 11 11 O 1.21276 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99585 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.46946 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.47079 * 179.97438 * 13 12 10 15 15 H 1.07989 * 119.99604 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99892 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00262 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47457 * 89.99410 * 18 16 14 20 20 H 1.48493 * 109.47048 * 209.99892 * 18 16 14 21 21 H 1.48499 * 109.46771 * 329.99908 * 18 16 14 22 22 C 1.46957 * 118.71783 * 306.64359 * 9 8 7 23 23 C 1.53040 * 109.44920 * 59.93617 * 6 4 3 24 24 H 1.08995 * 109.47620 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46689 * 299.99956 * 1 2 3 26 26 H 1.09001 * 109.46840 * 59.99948 * 1 2 3 27 27 H 0.97007 * 119.99573 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.46215 * 299.97026 * 6 4 3 29 29 H 1.09003 * 109.49852 * 58.67812 * 7 6 4 30 30 H 1.09001 * 109.52587 * 298.59773 * 7 6 4 31 31 H 1.09002 * 109.58786 * 174.42474 * 8 7 6 32 32 H 1.08996 * 109.58870 * 294.70753 * 8 7 6 33 33 H 1.09002 * 109.47438 * 299.99718 * 12 10 9 34 34 H 1.08999 * 109.47522 * 60.00065 * 12 10 9 35 35 H 1.08997 * 109.47578 * 300.00111 * 13 12 10 36 36 H 1.09002 * 109.46912 * 60.00365 * 13 12 10 37 37 H 0.96999 * 120.00646 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46843 * 293.57352 * 22 9 8 39 39 H 1.08997 * 109.71602 * 173.28846 * 22 9 8 40 40 H 1.08995 * 109.49643 * 301.32932 * 23 6 4 41 41 H 1.08996 * 109.49892 * 61.43126 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 3.3454 1.4344 -0.0005 5 8 4.0582 0.4531 -0.0005 6 6 3.9584 2.8110 0.0001 7 6 5.4840 2.6898 -0.0001 8 6 6.1035 4.0905 -0.0341 9 7 5.5610 4.8779 1.0814 10 6 6.3853 5.4909 1.9539 11 8 7.5871 5.3959 1.8221 12 6 5.8134 6.2945 3.0933 13 6 6.9545 6.8795 3.9280 14 6 6.3826 7.6837 5.0671 15 1 5.3125 7.7686 5.1841 16 6 7.2258 8.3109 5.9596 17 7 6.7269 9.0122 6.9539 18 14 9.0770 8.1645 5.7565 19 1 9.5697 9.2702 4.8963 20 1 9.7289 8.2453 7.0883 21 1 9.4040 6.8617 5.1235 22 6 4.1025 4.9807 1.2295 23 6 3.5058 3.5698 1.2497 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.4349 2.0783 0.0004 28 1 3.6367 3.3522 -0.8897 29 1 5.8044 2.1290 -0.8781 30 1 5.8083 2.1704 0.9017 31 1 7.1863 4.0137 0.0653 32 1 5.8570 4.5762 -0.9782 33 1 5.2015 7.1043 2.6957 34 1 5.1988 5.6490 3.7207 35 1 7.5661 6.0696 4.3256 36 1 7.5695 7.5250 3.3008 37 1 7.3200 9.4538 7.5816 38 1 3.6906 5.5400 0.3895 39 1 3.8628 5.4921 2.1617 40 1 2.4179 3.6354 1.2614 41 1 3.8486 3.0423 2.1397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333104621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -104.435650 kcal Electronic energy + Delta-G solvation = -22472.576188 eV Core-core repulsion = 18967.235735 eV Total energy + Delta-G solvation = -3505.340452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49483 -40.53155 -38.48931 -37.82723 -35.57348 -34.40466 -33.57744 -32.81703 -31.88464 -28.47902 -27.59570 -26.47167 -24.31600 -23.48474 -22.43794 -21.20022 -19.92393 -19.30729 -19.00355 -18.23469 -17.68068 -16.80217 -16.64276 -16.55273 -16.23817 -15.88792 -15.52519 -15.11477 -15.05292 -14.93371 -14.73440 -14.40123 -14.22475 -13.69986 -13.43059 -13.28068 -13.08265 -12.92433 -12.85306 -12.31995 -12.19450 -11.99121 -11.96284 -11.79371 -11.76537 -11.66155 -11.36854 -11.01126 -10.76911 -10.64257 -9.97756 -9.62226 -8.30678 -6.32734 0.91350 1.32940 1.35523 1.50553 1.53026 1.69650 2.08553 2.35635 3.05324 3.33258 3.59042 3.70249 3.78496 3.85690 4.07265 4.23202 4.32807 4.37275 4.39941 4.43170 4.45008 4.49604 4.67218 4.74328 4.74859 4.82069 4.86250 4.94284 5.08238 5.12285 5.30322 5.35499 5.45871 5.62079 5.66161 5.73946 6.24609 6.29156 6.42779 6.73581 7.24801 7.26745 7.32784 8.84773 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003132 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.864592 B = 8938.680138 C = 9498.687096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.189 6.189 3 N -0.585 5.585 4 C 0.527 3.473 5 O -0.579 6.579 6 C -0.081 4.081 7 C -0.108 4.108 8 C 0.113 3.887 9 N -0.614 5.614 10 C 0.511 3.489 11 O -0.590 6.590 12 C -0.113 4.113 13 C 0.004 3.996 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.934 3.066 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.101 3.899 23 C -0.125 4.125 24 H 0.121 0.879 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.427 0.573 28 H 0.148 0.852 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.004 0.996 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.287 -12.941 -19.428 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.193 6.193 3 N -0.290 5.290 4 C 0.315 3.685 5 O -0.456 6.456 6 C -0.102 4.102 7 C -0.147 4.147 8 C -0.010 4.010 9 N -0.348 5.348 10 C 0.302 3.698 11 O -0.471 6.471 12 C -0.153 4.153 13 C -0.034 4.034 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.759 3.241 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.021 4.021 23 C -0.163 4.163 24 H 0.139 0.861 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.271 0.729 28 H 0.166 0.834 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.023 0.977 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.045 -13.780 -19.355 28.670 hybrid contribution 0.477 0.167 0.522 0.727 sum -15.568 -13.613 -18.833 27.971 Atomic orbital electron populations 1.23561 0.77972 1.05890 1.02815 1.90584 1.22999 1.08220 1.97455 1.47630 1.05485 0.99032 1.76830 1.21405 0.79946 0.92366 0.74777 1.90727 1.61699 1.42239 1.50975 1.21323 0.95412 0.90135 1.03320 1.21666 0.93635 0.96303 1.03110 1.21625 0.99156 0.90409 0.89778 1.48295 1.07955 1.50510 1.28024 1.21296 0.86287 0.79017 0.83244 1.90628 1.17433 1.63683 1.75349 1.21506 0.99818 0.99671 0.94259 1.19240 0.94895 0.95141 0.94166 1.21421 0.94483 1.30168 1.10238 0.92716 1.25755 1.03153 0.94587 0.94784 1.70007 1.36961 1.34716 1.16630 0.85889 0.81043 0.79528 0.77618 1.19267 1.20456 1.18960 1.22101 0.77286 0.97116 1.05564 1.22026 1.03181 0.95148 0.95939 0.86116 0.91122 0.90788 0.72851 0.83432 0.89537 0.93712 0.91433 0.88193 0.87420 0.88142 0.97738 0.97403 0.92410 0.87147 0.88277 0.85998 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 11.30 113.37 1.28 1.24 16 2 O -0.19 -3.37 11.47 -21.38 -0.25 -3.62 16 3 N -0.58 -7.87 6.27 -173.54 -1.09 -8.96 16 4 C 0.53 10.26 7.30 87.66 0.64 10.89 16 5 O -0.58 -18.18 16.39 14.35 0.24 -17.95 16 6 C -0.08 -1.02 2.49 -11.51 -0.03 -1.05 16 7 C -0.11 -2.12 4.65 30.67 0.14 -1.98 16 8 C 0.11 2.37 6.43 86.36 0.56 2.92 16 9 N -0.61 -14.69 2.98 -818.82 -2.44 -17.13 16 10 C 0.51 18.04 7.70 87.66 0.67 18.71 16 11 O -0.59 -26.51 15.39 -3.02 -0.05 -26.56 16 12 C -0.11 -4.14 3.99 29.85 0.12 -4.03 16 13 C 0.00 0.18 3.33 29.85 0.10 0.28 16 14 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 15 H 0.05 3.23 7.99 -2.92 -0.02 3.21 16 16 C 0.01 0.89 5.47 84.66 0.46 1.35 16 17 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 18 Si 0.93 47.02 27.47 68.60 1.88 48.90 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.27 -13.44 6.54 99.48 0.65 -12.79 16 22 C 0.10 1.37 6.33 86.36 0.55 1.92 16 23 C -0.12 -1.36 5.27 30.67 0.16 -1.20 16 24 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.43 1.63 7.94 -92.70 -0.74 0.89 16 28 H 0.15 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.07 1.86 7.01 -2.39 -0.02 1.85 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 3.45 7.95 -2.39 -0.02 3.43 16 34 H 0.10 3.35 7.69 -2.39 -0.02 3.33 16 35 H 0.00 0.22 7.16 -2.39 -0.02 0.21 16 36 H 0.01 0.39 7.52 -2.39 -0.02 0.37 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.43 5.95 -2.39 -0.01 1.42 16 40 H 0.12 0.34 7.52 -2.39 -0.02 0.32 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -88.52 336.83 3.74 -84.79 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 0.24 Total: -0.57 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.90 Total: -0.60 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.23 Total: -84.40 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.06 Total: -48.12 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.88 Total: 48.90 kcal Total: -88.52 3.74 -84.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333104621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.651 kcal (2) G-P(sol) polarization free energy of solvation -88.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds