Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47345 * 2 1 4 4 N 1.41596 * 113.99946 * 179.97438 * 3 2 1 5 5 C 1.46502 * 119.99707 * 90.00198 * 4 3 2 6 6 C 1.34771 * 120.00433 * 269.72858 * 4 3 2 7 7 O 1.21347 * 120.00235 * 180.27837 * 6 4 3 8 8 C 1.49453 * 120.00066 * 0.27549 * 6 4 3 9 9 O 1.21348 * 119.99713 * 6.53103 * 8 6 4 10 10 N 1.34770 * 120.00228 * 186.53819 * 8 6 4 11 11 C 1.46927 * 120.63422 * 6.92365 * 10 8 6 12 12 C 1.53186 * 108.77752 * 233.59377 * 11 10 8 13 13 C 1.53049 * 109.31048 * 305.35766 * 12 11 10 14 14 C 1.53039 * 109.53372 * 61.36895 * 13 12 11 15 15 H 1.09004 * 109.50197 * 58.58752 * 14 13 12 16 16 C 1.50699 * 109.49562 * 178.67985 * 14 13 12 17 17 H 1.08002 * 120.00143 * 34.65667 * 16 14 13 18 18 C 1.37877 * 120.00214 * 214.65082 * 16 14 13 19 19 N 1.31518 * 120.00070 * 175.10345 * 18 16 14 20 20 Si 1.86804 * 120.00076 * 355.10614 * 18 16 14 21 21 H 1.48495 * 109.47063 * 95.21467 * 20 18 16 22 22 H 1.48497 * 109.47391 * 215.22083 * 20 18 16 23 23 H 1.48505 * 109.46858 * 335.21722 * 20 18 16 24 24 C 1.46931 * 120.62993 * 186.64892 * 10 8 6 25 25 H 1.08993 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46702 * 300.00164 * 1 2 3 27 27 H 1.09004 * 109.46993 * 59.99770 * 1 2 3 28 28 H 1.09004 * 109.46643 * 240.00323 * 2 1 3 29 29 H 1.09004 * 109.46993 * 120.00229 * 2 1 3 30 30 H 1.09000 * 109.47392 * 269.72454 * 5 4 3 31 31 H 1.09007 * 109.46926 * 29.72826 * 5 4 3 32 32 H 1.09001 * 109.47094 * 149.72055 * 5 4 3 33 33 H 1.09003 * 109.58084 * 353.37986 * 11 10 8 34 34 H 1.08999 * 109.58755 * 113.65779 * 11 10 8 35 35 H 1.09001 * 109.50133 * 65.31364 * 12 11 10 36 36 H 1.08997 * 109.49669 * 185.41522 * 12 11 10 37 37 H 1.08996 * 109.45805 * 181.38648 * 13 12 11 38 38 H 1.08993 * 109.45933 * 301.36137 * 13 12 11 39 39 H 0.97006 * 119.99621 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.58414 * 246.19763 * 24 10 8 41 41 H 1.08994 * 109.58637 * 6.62479 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1487 1.5167 -1.2679 6 6 4.0889 1.5179 1.1679 7 8 5.2982 1.6187 1.1684 8 6 3.3435 1.4590 2.4620 9 8 2.1501 1.2396 2.4653 10 7 3.9968 1.6498 3.6252 11 6 5.4062 2.0650 3.6330 12 6 6.2050 1.0822 4.4948 13 6 5.5683 0.9936 5.8837 14 6 4.1354 0.4710 5.7573 15 1 4.1460 -0.5078 5.2777 16 6 3.5203 0.3534 7.1280 17 1 3.7740 1.0682 7.8969 18 6 2.6336 -0.6666 7.4006 19 7 2.1710 -0.8272 8.6212 20 14 2.0892 -1.8205 6.0361 21 1 2.9385 -3.0386 6.0498 22 1 0.6704 -2.2038 6.2484 23 1 2.2263 -1.1363 4.7252 24 6 3.3115 1.4523 4.9098 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 4.4153 0.5069 -1.5799 31 1 3.5193 1.9780 -2.0291 32 1 5.0550 2.1082 -1.1386 33 1 5.7949 2.0575 2.6147 34 1 5.4890 3.0693 4.0484 35 1 6.1962 0.0977 4.0270 36 1 7.2331 1.4322 4.5876 37 1 6.1492 0.3136 6.5067 38 1 5.5548 1.9830 6.3407 39 1 1.5474 -1.5451 8.8129 40 1 3.2272 2.4067 5.4295 41 1 2.3177 1.0404 4.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333442711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = -43.286298 kcal Electronic energy + Delta-G solvation = -24005.049011 eV Core-core repulsion = 20502.360194 eV Total energy + Delta-G solvation = -3502.688817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75925 -38.68230 -37.80829 -36.82105 -33.89974 -33.17929 -31.84619 -30.66732 -30.43083 -27.98409 -25.47269 -25.09639 -23.18102 -22.16848 -21.82364 -20.32236 -19.01715 -17.82360 -17.18667 -16.81993 -16.36242 -15.91599 -15.66583 -15.03398 -14.76036 -14.33024 -14.06578 -13.91642 -13.55953 -13.34509 -13.14851 -12.95022 -12.53862 -12.50200 -12.46204 -12.21676 -12.12327 -11.76959 -11.56805 -11.17200 -10.72687 -10.63925 -10.41126 -10.26039 -10.03611 -9.73741 -9.52433 -9.35331 -9.21174 -8.71202 -8.63697 -8.08792 -6.14095 -4.14361 1.43909 1.61251 3.01994 3.26901 3.36764 3.37703 3.44722 4.11548 4.39207 4.68230 4.90626 4.99050 5.04924 5.10246 5.17453 5.28759 5.36758 5.46737 5.54377 5.60633 5.74331 5.81768 5.91869 6.03801 6.07959 6.21729 6.24948 6.44281 6.50933 6.57755 6.65713 6.81388 6.86158 7.02619 7.25693 7.33635 7.59980 7.72136 7.79256 8.29748 8.46906 8.91820 9.49219 10.98413 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006381 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.536124 B = 4387.040513 C = 5630.727384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 O -0.119 6.119 4 N -0.461 5.461 5 C 0.083 3.917 6 C 0.519 3.481 7 O -0.499 6.499 8 C 0.495 3.505 9 O -0.510 6.510 10 N -0.572 5.572 11 C 0.053 3.947 12 C -0.131 4.131 13 C -0.106 4.106 14 C 0.008 3.992 15 H 0.034 0.966 16 C -0.512 4.512 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.894 5.894 20 Si 0.869 3.131 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.257 1.257 24 C 0.109 3.891 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 3.383 -19.651 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 O -0.124 6.124 4 N -0.238 5.238 5 C -0.057 4.057 6 C 0.305 3.695 7 O -0.376 6.376 8 C 0.276 3.724 9 O -0.386 6.386 10 N -0.305 5.305 11 C -0.069 4.069 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.012 4.012 15 H 0.052 0.948 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.696 3.304 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.181 1.181 24 C -0.011 4.011 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.009 3.381 -19.517 20.035 hybrid contribution -0.464 -0.980 -0.534 1.209 sum 2.546 2.401 -20.051 20.354 Atomic orbital electron populations 1.21651 0.91970 1.02843 1.03509 1.23025 0.96337 0.84488 1.00871 1.90729 0.98917 1.26020 1.96747 1.49765 0.97051 1.71009 1.05995 1.22013 0.97138 1.02833 0.83715 1.21032 0.86999 0.76294 0.85210 1.90370 1.13312 1.49563 1.84334 1.19636 0.87395 0.80811 0.84590 1.90746 1.13662 1.47890 1.86352 1.48445 1.12906 1.63407 1.05744 1.23067 0.80095 0.97388 1.06304 1.21918 0.98406 0.99240 0.97352 1.21596 0.97564 1.00981 0.94268 1.19554 0.91936 0.94063 0.95626 0.94793 1.20909 1.25799 1.13519 0.94826 0.90572 1.25070 0.95477 0.97044 0.95119 1.69906 1.31911 1.32160 1.19162 0.86956 0.78143 0.81442 0.83815 1.20509 1.21261 1.18140 1.22783 0.97794 1.00841 0.79673 0.90541 0.90700 0.92006 0.93146 0.91667 0.92006 0.89730 0.88539 0.84190 0.92147 0.92382 0.91740 0.92215 0.92768 0.92537 0.91512 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.03 0.39 6.36 37.16 0.24 0.63 16 3 O -0.12 -1.73 9.52 -33.80 -0.32 -2.05 16 4 N -0.46 -6.33 3.35 -67.52 -0.23 -6.56 16 5 C 0.08 0.75 10.82 59.85 0.65 1.40 16 6 C 0.52 8.37 7.71 -11.59 -0.09 8.28 16 7 O -0.50 -7.93 12.68 5.50 0.07 -7.86 16 8 C 0.49 9.46 7.71 -11.59 -0.09 9.37 16 9 O -0.51 -10.73 12.96 -16.84 -0.22 -10.95 16 10 N -0.57 -11.05 2.97 -173.01 -0.51 -11.57 16 11 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C -0.11 -2.09 5.15 -26.69 -0.14 -2.23 16 14 C 0.01 0.18 1.79 -91.43 -0.16 0.02 16 15 H 0.03 0.83 5.61 -51.93 -0.29 0.53 16 16 C -0.51 -14.03 8.86 -34.44 -0.31 -14.33 16 17 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 20 Si 0.87 21.79 26.63 -169.99 -4.53 17.27 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.39 5.97 56.52 0.34 -6.06 16 24 C 0.11 2.39 5.52 -3.48 -0.02 2.38 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.99 7.20 -51.93 -0.37 0.62 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.83 7.42 -51.93 -0.39 0.44 16 33 H 0.14 2.24 3.78 -56.76 -0.21 2.02 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.08 2.00 5.94 -51.93 -0.31 1.69 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -31.78 328.29 -6.11 -37.89 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.27 Total: 0.19 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.18 Total: 4.93 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.03 Total: -44.36 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.47 Total: -20.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.53 Total: 17.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.78 -6.11 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333442711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.397 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds