Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47345 * 2 1 4 4 N 1.41596 * 113.99946 * 179.97438 * 3 2 1 5 5 C 1.46502 * 119.99707 * 90.00198 * 4 3 2 6 6 C 1.34771 * 120.00433 * 269.72858 * 4 3 2 7 7 O 1.21347 * 120.00235 * 180.27837 * 6 4 3 8 8 C 1.49453 * 120.00066 * 0.27549 * 6 4 3 9 9 O 1.21348 * 119.99713 * 6.53103 * 8 6 4 10 10 N 1.34770 * 120.00228 * 186.53819 * 8 6 4 11 11 C 1.46927 * 120.63422 * 6.92365 * 10 8 6 12 12 C 1.53186 * 108.77752 * 233.59377 * 11 10 8 13 13 C 1.53049 * 109.31048 * 305.35766 * 12 11 10 14 14 C 1.53039 * 109.53372 * 61.36895 * 13 12 11 15 15 H 1.09004 * 109.50197 * 58.58752 * 14 13 12 16 16 C 1.50699 * 109.49562 * 178.67985 * 14 13 12 17 17 H 1.08002 * 120.00143 * 34.65667 * 16 14 13 18 18 C 1.37877 * 120.00214 * 214.65082 * 16 14 13 19 19 N 1.31518 * 120.00070 * 175.10345 * 18 16 14 20 20 Si 1.86804 * 120.00076 * 355.10614 * 18 16 14 21 21 H 1.48495 * 109.47063 * 95.21467 * 20 18 16 22 22 H 1.48497 * 109.47391 * 215.22083 * 20 18 16 23 23 H 1.48505 * 109.46858 * 335.21722 * 20 18 16 24 24 C 1.46931 * 120.62993 * 186.64892 * 10 8 6 25 25 H 1.08993 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46702 * 300.00164 * 1 2 3 27 27 H 1.09004 * 109.46993 * 59.99770 * 1 2 3 28 28 H 1.09004 * 109.46643 * 240.00323 * 2 1 3 29 29 H 1.09004 * 109.46993 * 120.00229 * 2 1 3 30 30 H 1.09000 * 109.47392 * 269.72454 * 5 4 3 31 31 H 1.09007 * 109.46926 * 29.72826 * 5 4 3 32 32 H 1.09001 * 109.47094 * 149.72055 * 5 4 3 33 33 H 1.09003 * 109.58084 * 353.37986 * 11 10 8 34 34 H 1.08999 * 109.58755 * 113.65779 * 11 10 8 35 35 H 1.09001 * 109.50133 * 65.31364 * 12 11 10 36 36 H 1.08997 * 109.49669 * 185.41522 * 12 11 10 37 37 H 1.08996 * 109.45805 * 181.38648 * 13 12 11 38 38 H 1.08993 * 109.45933 * 301.36137 * 13 12 11 39 39 H 0.97006 * 119.99621 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.58414 * 246.19763 * 24 10 8 41 41 H 1.08994 * 109.58637 * 6.62479 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1487 1.5167 -1.2679 6 6 4.0889 1.5179 1.1679 7 8 5.2982 1.6187 1.1684 8 6 3.3435 1.4590 2.4620 9 8 2.1501 1.2396 2.4653 10 7 3.9968 1.6498 3.6252 11 6 5.4062 2.0650 3.6330 12 6 6.2050 1.0822 4.4948 13 6 5.5683 0.9936 5.8837 14 6 4.1354 0.4710 5.7573 15 1 4.1460 -0.5078 5.2777 16 6 3.5203 0.3534 7.1280 17 1 3.7740 1.0682 7.8969 18 6 2.6336 -0.6666 7.4006 19 7 2.1710 -0.8272 8.6212 20 14 2.0892 -1.8205 6.0361 21 1 2.9385 -3.0386 6.0498 22 1 0.6704 -2.2038 6.2484 23 1 2.2263 -1.1363 4.7252 24 6 3.3115 1.4523 4.9098 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 4.4153 0.5069 -1.5799 31 1 3.5193 1.9780 -2.0291 32 1 5.0550 2.1082 -1.1386 33 1 5.7949 2.0575 2.6147 34 1 5.4890 3.0693 4.0484 35 1 6.1962 0.0977 4.0270 36 1 7.2331 1.4322 4.5876 37 1 6.1492 0.3136 6.5067 38 1 5.5548 1.9830 6.3407 39 1 1.5474 -1.5451 8.8129 40 1 3.2272 2.4067 5.4295 41 1 2.3177 1.0404 4.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333442711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = -63.792495 kcal Electronic energy + Delta-G solvation = -24005.938227 eV Core-core repulsion = 20502.360194 eV Total energy + Delta-G solvation = -3503.578033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08168 -40.04536 -39.00608 -38.30529 -35.32871 -34.70057 -33.56444 -32.18663 -31.56131 -29.08035 -27.25481 -26.59208 -24.21915 -23.50058 -23.39898 -21.60423 -20.62913 -19.35593 -18.75682 -18.35221 -17.56698 -17.24997 -16.92307 -16.45469 -16.04572 -15.92865 -15.64707 -15.22894 -15.06421 -14.83145 -14.50536 -14.24691 -14.01067 -13.74042 -13.65611 -13.31248 -13.19204 -13.10067 -13.03150 -12.62604 -12.58740 -12.30751 -12.05443 -11.69467 -11.61574 -11.31981 -11.23681 -11.15998 -10.81164 -10.39191 -10.06550 -9.66936 -8.36336 -6.38935 0.14192 0.53987 1.23838 1.30434 1.41889 1.66568 1.98559 2.27174 2.79386 3.01609 3.61685 4.00198 4.03996 4.12227 4.14524 4.21486 4.30092 4.35021 4.44512 4.47558 4.52659 4.62853 4.71557 4.77533 4.79862 4.90186 4.93557 4.95449 5.07693 5.16688 5.19636 5.29612 5.39421 5.54884 5.58892 5.64736 5.89618 6.23820 6.28485 6.50845 6.69080 6.84916 7.27314 8.80077 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006381 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.536124 B = 4387.040513 C = 5630.727384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.029 3.971 3 O -0.136 6.136 4 N -0.454 5.454 5 C 0.077 3.923 6 C 0.521 3.479 7 O -0.498 6.498 8 C 0.485 3.515 9 O -0.537 6.537 10 N -0.579 5.579 11 C 0.052 3.948 12 C -0.122 4.122 13 C -0.103 4.103 14 C 0.008 3.992 15 H 0.024 0.976 16 C -0.510 4.510 17 H 0.044 0.956 18 C 0.024 3.976 19 N -0.940 5.940 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.258 1.258 24 C 0.121 3.879 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 3.403 -22.937 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 O -0.141 6.141 4 N -0.230 5.230 5 C -0.061 4.061 6 C 0.306 3.694 7 O -0.376 6.376 8 C 0.267 3.733 9 O -0.415 6.415 10 N -0.311 5.311 11 C -0.068 4.068 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.012 4.012 15 H 0.042 0.958 16 C -0.549 4.549 17 H 0.062 0.938 18 C -0.175 4.175 19 N -0.579 5.579 20 Si 0.755 3.245 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.183 1.183 24 C -0.001 4.001 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.288 3.409 -22.851 23.499 hybrid contribution -0.852 -0.919 0.461 1.335 sum 3.436 2.491 -22.390 22.789 Atomic orbital electron populations 1.21674 0.90826 1.03983 1.03129 1.23139 0.97290 0.83636 1.00766 1.90708 0.99409 1.27235 1.96795 1.49890 0.96976 1.69533 1.06632 1.22393 0.97321 1.04478 0.81883 1.20268 0.86824 0.77439 0.84863 1.90347 1.12744 1.50199 1.84293 1.20285 0.87400 0.79866 0.85756 1.90731 1.14999 1.48713 1.87038 1.48439 1.14010 1.63717 1.04939 1.23302 0.78225 0.98017 1.07242 1.21869 1.00029 0.99341 0.94749 1.21508 0.95207 1.00720 0.96650 1.19503 0.94212 0.94245 0.93250 0.95817 1.21168 1.25242 1.12261 0.96216 0.93772 1.25784 0.95851 0.98902 0.96942 1.70023 1.33361 1.33465 1.21078 0.85993 0.77796 0.79749 0.80946 1.19379 1.21106 1.18268 1.22255 0.96436 1.00171 0.81254 0.88669 0.93390 0.89987 0.90069 0.94763 0.90136 0.87292 0.87808 0.82911 0.90620 0.92856 0.88107 0.92678 0.92451 0.92389 0.91501 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.03 0.69 6.36 71.98 0.46 1.15 16 3 O -0.14 -3.72 9.52 -17.42 -0.17 -3.89 16 4 N -0.45 -11.33 3.35 -485.88 -1.63 -12.95 16 5 C 0.08 1.10 10.82 127.77 1.38 2.48 16 6 C 0.52 15.77 7.71 87.27 0.67 16.44 16 7 O -0.50 -14.39 12.68 -3.24 -0.04 -14.43 16 8 C 0.48 18.18 7.71 87.27 0.67 18.86 16 9 O -0.54 -22.77 12.96 18.12 0.23 -22.53 16 10 N -0.58 -21.83 2.97 -819.65 -2.43 -24.26 16 11 C 0.05 1.59 6.27 86.36 0.54 2.13 16 12 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 13 C -0.10 -3.95 5.15 30.62 0.16 -3.79 16 14 C 0.01 0.36 1.79 -11.32 -0.02 0.33 16 15 H 0.02 1.15 5.61 -2.39 -0.01 1.14 16 16 C -0.51 -28.76 8.86 25.60 0.23 -28.54 16 17 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 18 C 0.02 1.38 5.47 84.65 0.46 1.85 16 19 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 20 Si 0.93 46.15 26.63 68.60 1.83 47.98 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.26 -12.76 5.97 99.48 0.59 -12.17 16 24 C 0.12 5.33 5.52 86.51 0.48 5.81 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.02 7.20 -2.38 -0.02 1.01 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.10 1.39 7.42 -2.39 -0.02 1.37 16 33 H 0.15 4.40 3.78 -78.95 -0.30 4.10 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.06 2.80 5.94 -2.39 -0.01 2.78 16 Total: -1.00 -70.80 328.29 4.67 -66.13 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.62 Total: 11.01 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.96 Total: 11.14 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.76 Total: -95.42 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: 0.03 Total: -40.85 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.83 Total: 47.98 kcal Total: -70.80 4.67 -66.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333442711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.339 kcal (2) G-P(sol) polarization free energy of solvation -70.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds