Wall clock time and date at job start Tue Mar 31 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46931 * 2 1 4 4 N 1.41603 * 113.99637 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99733 * 269.99322 * 4 3 2 6 6 C 1.34774 * 120.00542 * 89.99758 * 4 3 2 7 7 O 1.21348 * 120.00238 * 179.97438 * 6 4 3 8 8 C 1.49450 * 119.99456 * 359.97438 * 6 4 3 9 9 O 1.21346 * 120.00470 * 353.48618 * 8 6 4 10 10 N 1.34778 * 119.99791 * 173.48001 * 8 6 4 11 11 C 1.46931 * 120.63094 * 353.15712 * 10 8 6 12 12 C 1.53190 * 108.77783 * 126.41192 * 11 10 8 13 13 C 1.53041 * 109.31277 * 54.63141 * 12 11 10 14 14 C 1.53035 * 109.53889 * 298.63612 * 13 12 11 15 15 H 1.09002 * 109.50092 * 301.41420 * 14 13 12 16 16 C 1.50705 * 109.52326 * 181.33227 * 14 13 12 17 17 H 1.08002 * 119.99683 * 0.08360 * 16 14 13 18 18 C 1.37876 * 120.00128 * 180.02562 * 16 14 13 19 19 N 1.31521 * 119.99738 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00108 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46966 * 90.00702 * 20 18 16 22 22 H 1.48499 * 109.47024 * 210.00230 * 20 18 16 23 23 H 1.48498 * 109.47201 * 330.00425 * 20 18 16 24 24 C 1.46928 * 120.63219 * 173.17328 * 10 8 6 25 25 H 1.08998 * 109.46915 * 60.00765 * 1 2 3 26 26 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47459 * 300.00014 * 1 2 3 28 28 H 1.08994 * 109.47376 * 239.99437 * 2 1 3 29 29 H 1.09011 * 109.47038 * 119.99303 * 2 1 3 30 30 H 1.09003 * 109.47206 * 270.00406 * 5 4 3 31 31 H 1.08998 * 109.47070 * 30.00179 * 5 4 3 32 32 H 1.09004 * 109.47170 * 150.00523 * 5 4 3 33 33 H 1.09008 * 109.57972 * 246.19957 * 11 10 8 34 34 H 1.08996 * 109.58549 * 6.47664 * 11 10 8 35 35 H 1.09000 * 109.49690 * 174.58749 * 12 11 10 36 36 H 1.09003 * 109.49274 * 294.67948 * 12 11 10 37 37 H 1.08998 * 109.45472 * 178.61313 * 13 12 11 38 38 H 1.08997 * 109.45855 * 58.65704 * 13 12 11 39 39 H 0.97004 * 119.99682 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58801 * 113.80017 * 24 10 8 41 41 H 1.09003 * 109.70537 * 353.44536 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 4.1486 1.5168 1.2679 6 6 4.0893 1.5124 -1.1680 7 8 5.2990 1.6086 -1.1684 8 6 3.3439 1.4530 -2.4619 9 8 2.1495 1.2384 -2.4649 10 7 3.9982 1.6379 -3.6256 11 6 5.4097 2.0457 -3.6342 12 6 6.2034 1.0570 -4.4940 13 6 5.5662 0.9688 -5.8826 14 6 4.1307 0.4540 -5.7553 15 1 4.1362 -0.5238 -5.2736 16 6 3.5144 0.3362 -7.1255 17 1 4.0894 0.6007 -8.0007 18 6 2.2171 -0.1102 -7.2619 19 7 1.5172 -0.4328 -6.1961 20 14 1.4530 -0.2555 -8.9602 21 1 1.7139 -1.6117 -9.5060 22 1 -0.0122 -0.0340 -8.8644 23 1 2.0499 0.7636 -9.8604 24 6 3.3134 1.4359 -4.9098 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.2486 2.5556 1.5826 31 1 3.6022 0.9581 2.0277 32 1 5.1386 1.0799 1.1372 33 1 5.4979 3.0478 -4.0540 34 1 5.7977 2.0408 -2.6156 35 1 7.2334 1.4014 -4.5875 36 1 6.1895 0.0736 -4.0241 37 1 6.1436 0.2845 -6.5043 38 1 5.5581 1.9573 -6.3419 39 1 0.6044 -0.7466 -6.2921 40 1 3.2307 2.3882 -5.4336 41 1 2.3181 1.0273 -4.7353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333442712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:17 Heat of formation + Delta-G solvation = -43.992771 kcal Electronic energy + Delta-G solvation = -23970.883730 eV Core-core repulsion = 20468.164278 eV Total energy + Delta-G solvation = -3502.719452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52879 -38.42876 -37.61421 -36.57648 -33.75406 -33.14729 -31.70672 -30.48933 -29.72525 -27.80218 -25.32526 -24.87171 -23.01010 -22.05720 -21.73138 -20.19016 -18.90277 -17.56145 -16.98101 -16.40015 -16.05395 -15.58096 -15.45715 -14.86435 -14.56163 -14.46216 -13.92528 -13.70373 -13.34019 -13.13076 -12.86275 -12.74284 -12.59278 -12.36396 -12.09486 -12.01360 -11.77458 -11.55376 -11.33478 -10.98256 -10.69893 -10.44674 -10.26997 -10.08848 -10.01954 -9.84035 -9.20944 -9.17596 -9.10864 -8.52953 -8.41221 -7.78088 -6.02463 -4.10256 1.65110 1.79852 3.25861 3.31750 3.37385 3.40046 3.63551 4.34523 4.43115 4.86249 5.06215 5.10063 5.21667 5.25057 5.28442 5.45599 5.49316 5.63579 5.69733 5.76740 5.89876 5.99034 6.10524 6.23490 6.27719 6.39809 6.60031 6.62706 6.75051 6.88296 7.00206 7.06987 7.18791 7.24464 7.59371 7.79694 7.88842 7.95931 8.17272 8.35866 8.63054 8.93729 9.55225 11.03195 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.005677 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.579202 B = 4931.356802 C = 6273.127325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.031 3.969 3 O -0.119 6.119 4 N -0.463 5.463 5 C 0.084 3.916 6 C 0.518 3.482 7 O -0.502 6.502 8 C 0.494 3.506 9 O -0.502 6.502 10 N -0.571 5.571 11 C 0.052 3.948 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.111 3.889 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.140 0.860 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.047 0.953 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 2.553 14.124 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 O -0.124 6.124 4 N -0.239 5.239 5 C -0.056 4.056 6 C 0.304 3.696 7 O -0.380 6.380 8 C 0.275 3.725 9 O -0.377 6.377 10 N -0.303 5.303 11 C -0.070 4.070 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.009 4.009 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.364 2.600 14.167 14.791 hybrid contribution -0.493 -0.364 -0.944 1.126 sum 2.871 2.236 13.222 13.714 Atomic orbital electron populations 1.21633 0.92028 1.02778 1.03412 1.23024 0.96304 0.84510 1.00876 1.90733 0.98892 1.26043 1.96740 1.49796 0.97045 1.71145 1.05951 1.21976 0.96848 1.03111 0.83661 1.21236 0.87003 0.76011 0.85353 1.90351 1.13455 1.49745 1.84413 1.19537 0.87492 0.81123 0.84371 1.90767 1.13453 1.47368 1.86138 1.48427 1.12280 1.63433 1.06204 1.23011 0.80883 0.97116 1.05956 1.21857 0.98029 0.99282 0.97376 1.21663 0.98702 1.00430 0.94291 1.18975 0.89403 0.94297 0.95179 0.95346 1.21097 0.98077 1.44641 0.91870 0.92260 1.25052 0.97300 0.94912 0.96764 1.69877 1.10245 1.43891 1.28052 0.86569 0.78433 0.78414 0.84457 1.20686 1.21176 1.19871 1.22452 1.00463 0.99028 0.78922 0.90576 0.90594 0.92255 0.91331 0.93422 0.91241 0.90288 0.89228 0.92658 0.84404 0.92265 0.92404 0.93096 0.93216 0.92680 0.93457 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.28 37.16 0.38 -1.32 16 2 C 0.03 0.43 6.35 37.16 0.24 0.66 16 3 O -0.12 -1.89 9.52 -33.81 -0.32 -2.21 16 4 N -0.46 -6.94 3.36 -67.52 -0.23 -7.17 16 5 C 0.08 0.85 10.82 59.85 0.65 1.50 16 6 C 0.52 9.11 7.71 -11.59 -0.09 9.03 16 7 O -0.50 -8.69 12.68 5.50 0.07 -8.62 16 8 C 0.49 10.37 7.71 -11.58 -0.09 10.28 16 9 O -0.50 -11.62 12.96 -16.84 -0.22 -11.84 16 10 N -0.57 -12.18 2.97 -173.27 -0.52 -12.69 16 11 C 0.05 0.95 6.27 -3.71 -0.02 0.92 16 12 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 13 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 14 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -25.31 11.39 55.43 0.63 -24.68 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 C 0.11 2.72 5.38 -3.71 -0.02 2.70 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.14 7.19 -51.93 -0.37 0.77 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.87 7.42 -51.93 -0.39 0.49 16 33 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.14 2.43 3.78 -56.77 -0.21 2.21 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.12 3.43 5.18 -51.93 -0.27 3.16 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -30.58 331.05 -6.74 -37.33 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.28 Total: 1.84 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.15 Total: 6.93 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.11 Total: -44.54 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.47 Total: -22.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.58 -6.74 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333442712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.666 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds