Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46931 * 2 1 4 4 N 1.41603 * 113.99637 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.99733 * 269.99322 * 4 3 2 6 6 C 1.34774 * 120.00542 * 89.99758 * 4 3 2 7 7 O 1.21348 * 120.00238 * 179.97438 * 6 4 3 8 8 C 1.49450 * 119.99456 * 359.97438 * 6 4 3 9 9 O 1.21346 * 120.00470 * 353.48618 * 8 6 4 10 10 N 1.34778 * 119.99791 * 173.48001 * 8 6 4 11 11 C 1.46931 * 120.63094 * 353.15712 * 10 8 6 12 12 C 1.53190 * 108.77783 * 126.41192 * 11 10 8 13 13 C 1.53041 * 109.31277 * 54.63141 * 12 11 10 14 14 C 1.53035 * 109.53889 * 298.63612 * 13 12 11 15 15 H 1.09002 * 109.50092 * 301.41420 * 14 13 12 16 16 C 1.50705 * 109.52326 * 181.33227 * 14 13 12 17 17 H 1.08002 * 119.99683 * 0.08360 * 16 14 13 18 18 C 1.37876 * 120.00128 * 180.02562 * 16 14 13 19 19 N 1.31521 * 119.99738 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00108 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46966 * 90.00702 * 20 18 16 22 22 H 1.48499 * 109.47024 * 210.00230 * 20 18 16 23 23 H 1.48498 * 109.47201 * 330.00425 * 20 18 16 24 24 C 1.46928 * 120.63219 * 173.17328 * 10 8 6 25 25 H 1.08998 * 109.46915 * 60.00765 * 1 2 3 26 26 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47459 * 300.00014 * 1 2 3 28 28 H 1.08994 * 109.47376 * 239.99437 * 2 1 3 29 29 H 1.09011 * 109.47038 * 119.99303 * 2 1 3 30 30 H 1.09003 * 109.47206 * 270.00406 * 5 4 3 31 31 H 1.08998 * 109.47070 * 30.00179 * 5 4 3 32 32 H 1.09004 * 109.47170 * 150.00523 * 5 4 3 33 33 H 1.09008 * 109.57972 * 246.19957 * 11 10 8 34 34 H 1.08996 * 109.58549 * 6.47664 * 11 10 8 35 35 H 1.09000 * 109.49690 * 174.58749 * 12 11 10 36 36 H 1.09003 * 109.49274 * 294.67948 * 12 11 10 37 37 H 1.08998 * 109.45472 * 178.61313 * 13 12 11 38 38 H 1.08997 * 109.45855 * 58.65704 * 13 12 11 39 39 H 0.97004 * 119.99682 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58801 * 113.80017 * 24 10 8 41 41 H 1.09003 * 109.70537 * 353.44536 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 4.1486 1.5168 1.2679 6 6 4.0893 1.5124 -1.1680 7 8 5.2990 1.6086 -1.1684 8 6 3.3439 1.4530 -2.4619 9 8 2.1495 1.2384 -2.4649 10 7 3.9982 1.6379 -3.6256 11 6 5.4097 2.0457 -3.6342 12 6 6.2034 1.0570 -4.4940 13 6 5.5662 0.9688 -5.8826 14 6 4.1307 0.4540 -5.7553 15 1 4.1362 -0.5238 -5.2736 16 6 3.5144 0.3362 -7.1255 17 1 4.0894 0.6007 -8.0007 18 6 2.2171 -0.1102 -7.2619 19 7 1.5172 -0.4328 -6.1961 20 14 1.4530 -0.2555 -8.9602 21 1 1.7139 -1.6117 -9.5060 22 1 -0.0122 -0.0340 -8.8644 23 1 2.0499 0.7636 -9.8604 24 6 3.3134 1.4359 -4.9098 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.2486 2.5556 1.5826 31 1 3.6022 0.9581 2.0277 32 1 5.1386 1.0799 1.1372 33 1 5.4979 3.0478 -4.0540 34 1 5.7977 2.0408 -2.6156 35 1 7.2334 1.4014 -4.5875 36 1 6.1895 0.0736 -4.0241 37 1 6.1436 0.2845 -6.5043 38 1 5.5581 1.9573 -6.3419 39 1 0.6044 -0.7466 -6.2921 40 1 3.2307 2.3882 -5.4336 41 1 2.3181 1.0273 -4.7353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333442712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = -62.728017 kcal Electronic energy + Delta-G solvation = -23971.696151 eV Core-core repulsion = 20468.164278 eV Total energy + Delta-G solvation = -3503.531874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99280 -39.94263 -38.94751 -38.21477 -35.33740 -34.66224 -33.44716 -31.63262 -31.48297 -29.02370 -27.20372 -26.48456 -24.19200 -23.62825 -23.30645 -21.60570 -20.57890 -19.11755 -18.37926 -18.20692 -17.44204 -17.13513 -16.86982 -16.52164 -16.06021 -15.86479 -15.56249 -15.16394 -14.86772 -14.58523 -14.46158 -14.10282 -13.84494 -13.66519 -13.48290 -13.25717 -13.14012 -12.97493 -12.88433 -12.59575 -12.44181 -12.29408 -12.15667 -11.71499 -11.55976 -11.26367 -11.15412 -10.97823 -10.54745 -10.33297 -10.03098 -9.51849 -8.12535 -6.28826 0.21300 0.58355 1.41146 1.42457 1.53047 1.77926 2.07663 2.41730 2.90210 3.16817 3.65513 4.04178 4.13515 4.16017 4.18242 4.28943 4.34773 4.37800 4.50646 4.57172 4.67235 4.75496 4.77901 4.81440 4.87968 4.96850 5.05613 5.15099 5.21816 5.24178 5.26751 5.39203 5.50278 5.56666 5.83091 5.92682 5.94626 6.28477 6.40417 6.58035 6.81825 6.98772 7.40963 8.91554 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.005677 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.579202 B = 4931.356802 C = 6273.127325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 O -0.137 6.137 4 N -0.454 5.454 5 C 0.078 3.922 6 C 0.522 3.478 7 O -0.500 6.500 8 C 0.481 3.519 9 O -0.534 6.534 10 N -0.578 5.578 11 C 0.051 3.949 12 C -0.120 4.120 13 C -0.107 4.107 14 C 0.040 3.960 15 H -0.011 1.011 16 C -0.536 4.536 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.914 5.914 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.264 1.264 24 C 0.125 3.875 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.041 0.959 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 3.119 15.326 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.047 4.047 3 O -0.142 6.142 4 N -0.230 5.230 5 C -0.060 4.060 6 C 0.307 3.693 7 O -0.379 6.379 8 C 0.263 3.737 9 O -0.411 6.411 10 N -0.311 5.311 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.145 4.145 14 C 0.020 3.980 15 H 0.007 0.993 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.553 5.553 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C 0.004 3.996 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.720 3.174 15.406 16.422 hybrid contribution -0.925 -0.556 -1.237 1.642 sum 3.795 2.618 14.169 14.900 Atomic orbital electron populations 1.21648 0.90852 1.03939 1.02962 1.23124 0.97281 0.83624 1.00694 1.90711 0.99423 1.27283 1.96783 1.49904 0.96964 1.69565 1.06605 1.22380 0.96894 1.04974 0.81726 1.20351 0.86803 0.77258 0.84938 1.90324 1.12775 1.50382 1.84377 1.20280 0.87509 0.80146 0.85747 1.90745 1.15036 1.48406 1.86958 1.48460 1.13568 1.63664 1.05402 1.23262 0.78829 0.97830 1.07032 1.21823 0.99859 0.98943 0.95139 1.21560 0.95945 1.00502 0.96456 1.18906 0.92375 0.92638 0.94042 0.99332 1.21482 0.98476 1.44480 0.92954 0.91938 1.25873 0.97879 0.94603 1.00398 1.70056 1.10316 1.44733 1.30187 0.85536 0.77313 0.78687 0.80026 1.20078 1.21198 1.18775 1.21907 0.98995 0.98111 0.80634 0.93721 0.88665 0.89878 0.95005 0.89900 0.89433 0.87414 0.88474 0.91108 0.83125 0.88225 0.93487 0.92718 0.92467 0.92979 0.94066 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 10.28 71.98 0.74 -2.50 16 2 C 0.03 0.83 6.35 71.98 0.46 1.29 16 3 O -0.14 -4.25 9.52 -17.43 -0.17 -4.42 16 4 N -0.45 -12.96 3.36 -485.88 -1.63 -14.59 16 5 C 0.08 1.33 10.82 127.77 1.38 2.71 16 6 C 0.52 18.01 7.71 87.27 0.67 18.68 16 7 O -0.50 -16.42 12.68 -3.24 -0.04 -16.46 16 8 C 0.48 20.76 7.71 87.27 0.67 21.43 16 9 O -0.53 -26.06 12.96 18.12 0.23 -25.83 16 10 N -0.58 -25.19 2.97 -820.46 -2.44 -27.63 16 11 C 0.05 1.78 6.27 86.36 0.54 2.32 16 12 C -0.12 -4.09 6.08 30.67 0.19 -3.90 16 13 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 14 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 15 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 16 C -0.54 -29.67 8.56 25.60 0.22 -29.45 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.67 5.30 84.65 0.45 1.12 16 19 N -0.91 -54.72 11.39 21.45 0.24 -54.47 16 20 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.13 6.39 5.38 86.36 0.46 6.86 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.10 7.19 -2.39 -0.02 1.08 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.57 7.42 -2.38 -0.02 1.56 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.15 4.99 3.78 -79.08 -0.30 4.70 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 5.00 5.18 -2.39 -0.01 4.99 16 Total: -1.00 -69.66 331.05 4.88 -64.78 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.73 Total: 16.18 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 5.92 Total: 16.36 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -3.82 Total: -96.69 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: 0.03 Total: -46.71 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.66 4.88 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333442712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.054 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds