Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99624 * 2 1 4 4 H 1.48506 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47145 * 299.99828 * 3 2 1 6 6 H 1.48495 * 109.47120 * 59.99905 * 3 2 1 7 7 C 1.37880 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47462 * 299.99832 * 9 7 2 11 11 O 1.42903 * 109.47073 * 60.00224 * 9 7 2 12 12 C 1.52999 * 109.46909 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47089 * 179.73833 * 12 9 7 14 14 C 1.46848 * 110.99538 * 294.02650 * 13 12 9 15 15 C 1.53045 * 109.51290 * 174.15733 * 14 13 12 16 16 C 1.53116 * 109.27509 * 59.18712 * 15 14 13 17 17 N 1.46508 * 109.52057 * 182.44340 * 16 15 14 18 18 C 1.47095 * 125.55739 * 240.00258 * 17 16 15 19 19 C 1.54085 * 103.77649 * 179.97438 * 18 17 16 20 20 O 1.45711 * 104.00852 * 359.97438 * 19 18 17 21 21 C 1.33766 * 109.47286 * 359.75551 * 20 19 18 22 22 O 1.21516 * 123.06867 * 180.24534 * 21 20 19 23 23 C 1.53112 * 109.16317 * 302.34320 * 16 15 14 24 24 C 1.46852 * 110.99149 * 169.82941 * 13 12 9 25 25 H 0.96999 * 120.00139 * 0.02562 * 1 2 3 26 26 H 0.96692 * 114.00576 * 59.99868 * 11 9 7 27 27 H 1.08997 * 109.47215 * 59.73041 * 12 9 7 28 28 H 1.09008 * 109.47017 * 299.73586 * 12 9 7 29 29 H 1.09003 * 109.45947 * 54.15154 * 14 13 12 30 30 H 1.08999 * 109.46817 * 294.16990 * 14 13 12 31 31 H 1.08999 * 109.50055 * 179.13182 * 15 14 13 32 32 H 1.09008 * 109.49840 * 299.24850 * 15 14 13 33 33 H 1.08996 * 109.52414 * 62.25692 * 16 15 14 34 34 H 1.08998 * 110.56502 * 298.54722 * 18 17 16 35 35 H 1.09002 * 110.56547 * 61.40148 * 18 17 16 36 36 H 1.09002 * 110.52243 * 118.63104 * 19 18 17 37 37 H 1.08997 * 110.52312 * 241.23061 * 19 18 17 38 38 H 1.09000 * 109.50675 * 177.59428 * 23 16 15 39 39 H 1.08995 * 109.50960 * 297.67710 * 23 16 15 40 40 H 1.09000 * 109.47181 * 65.82778 * 24 13 12 41 41 H 1.09000 * 109.45138 * 305.85153 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8902 11 8 0.4300 -2.5751 -1.1666 12 6 2.2454 -3.6620 0.0005 13 7 1.5109 -4.9342 0.0069 14 6 0.7688 -5.1071 1.2622 15 6 -0.0961 -6.3667 1.1754 16 6 0.8023 -7.5802 0.9206 17 7 -0.0252 -8.7808 0.7785 18 6 0.0494 -9.9769 1.6314 19 6 -1.0257 -10.9126 1.0460 20 8 -1.5879 -10.1534 -0.0634 21 6 -0.9781 -8.9656 -0.1453 22 8 -1.2596 -8.1321 -0.9835 23 6 1.6001 -7.3535 -0.3664 24 6 2.4158 -6.0653 -0.2350 25 1 -0.4850 0.8400 -0.0004 26 1 0.9224 -2.5300 -1.9975 27 1 2.8752 -3.6016 0.8881 28 1 2.8689 -3.6069 -0.8919 29 1 0.1307 -4.2393 1.4292 30 1 1.4719 -5.2056 2.0892 31 1 -0.6351 -6.5033 2.1129 32 1 -0.8086 -6.2632 0.3570 33 1 1.4891 -7.7070 1.7574 34 1 1.0355 -10.4359 1.5619 35 1 -0.1846 -9.7248 2.6658 36 1 -0.5732 -11.8369 0.6865 37 1 -1.7917 -11.1279 1.7909 38 1 2.2731 -8.1951 -0.5305 39 1 0.9144 -7.2662 -1.2091 40 1 3.1111 -6.1592 0.5991 41 1 2.9739 -5.8932 -1.1554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336133441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = -109.261360 kcal Electronic energy + Delta-G solvation = -23370.388976 eV Core-core repulsion = 19864.839266 eV Total energy + Delta-G solvation = -3505.549711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69994 -38.84730 -37.13469 -36.10637 -34.84582 -32.18869 -31.96071 -30.66306 -29.62762 -27.89927 -25.24921 -23.89614 -23.43127 -22.96649 -21.24748 -20.10511 -19.44633 -17.48758 -17.40652 -17.00702 -16.61890 -15.14098 -15.01475 -14.82481 -14.58260 -14.34634 -14.27981 -14.06689 -14.05180 -13.64538 -13.32916 -12.95022 -12.87168 -12.51452 -12.44309 -11.83908 -11.58666 -11.07638 -11.02616 -10.94909 -10.82658 -10.80202 -10.72264 -10.51515 -10.33584 -10.11195 -9.95147 -8.99077 -8.88090 -8.51972 -8.02571 -7.57197 -5.95781 -4.14261 2.30764 2.72964 3.29109 3.29972 3.37327 3.40229 3.87189 4.31714 4.32830 4.41366 4.52656 4.85479 4.89181 4.90121 5.08657 5.15021 5.31552 5.36315 5.43063 5.51501 5.57638 5.73995 5.84549 5.91020 6.06295 6.17494 6.22571 6.37952 6.42745 6.49313 6.60195 6.68557 6.86723 7.29662 7.60294 7.68021 7.83251 7.93767 8.03580 8.25595 8.90068 9.52634 9.70058 11.08229 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.003461 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.446415 B = 8089.039266 C = 8296.014284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.236 3.764 10 H 0.054 0.946 11 O -0.552 6.552 12 C 0.032 3.968 13 N -0.525 5.525 14 C 0.063 3.937 15 C -0.131 4.131 16 C 0.181 3.819 17 N -0.629 5.629 18 C 0.064 3.936 19 C 0.042 3.958 20 O -0.333 6.333 21 C 0.638 3.362 22 O -0.504 6.504 23 C -0.130 4.130 24 C 0.061 3.939 25 H 0.259 0.741 26 H 0.342 0.658 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -22.357 6.113 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.178 3.822 10 H 0.071 0.929 11 O -0.354 6.354 12 C -0.096 4.096 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.170 4.170 16 C 0.081 3.919 17 N -0.377 5.377 18 C -0.059 4.059 19 C -0.034 4.034 20 O -0.244 6.244 21 C 0.392 3.608 22 O -0.387 6.387 23 C -0.169 4.169 24 C -0.068 4.068 25 H 0.069 0.931 26 H 0.185 0.815 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.626 -21.936 5.608 22.700 hybrid contribution 1.750 0.812 0.605 2.022 sum 3.377 -21.124 6.213 22.276 Atomic orbital electron populations 1.70097 1.05883 1.26236 1.47084 1.25030 0.94671 0.99046 0.93935 0.86636 0.80168 0.83996 0.77663 1.19789 1.20872 1.20961 1.21700 0.93137 0.91670 1.54752 0.92740 1.19326 0.87784 0.88466 0.86601 0.92856 1.86573 1.37610 1.96283 1.14916 1.23077 0.97231 0.89761 0.99488 1.61916 1.27236 1.01781 1.34038 1.22013 0.96648 0.97991 0.89937 1.22033 0.99051 0.92980 1.02897 1.21037 0.90831 0.81411 0.98643 1.48324 1.38693 1.17928 1.32719 1.22785 1.00548 0.86124 0.96487 1.24223 0.96188 0.95042 0.87904 1.87295 1.58747 1.28157 1.50209 1.18554 0.78742 0.81475 0.82068 1.91111 1.67380 1.42019 1.38180 1.22005 0.99196 0.96995 0.98675 1.21996 0.93715 0.90680 1.00429 0.93071 0.81454 0.95646 0.91806 0.89086 0.95835 0.91874 0.88927 0.89442 0.89265 0.89223 0.87871 0.87839 0.92034 0.89092 0.95799 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.57 -15.89 8.76 -34.44 -0.30 -16.19 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.07 2.71 -27.88 -0.08 5.99 16 10 H 0.05 1.50 6.42 -51.93 -0.33 1.16 16 11 O -0.55 -14.93 12.60 -35.23 -0.44 -15.38 16 12 C 0.03 0.66 4.56 -3.82 -0.02 0.64 16 13 N -0.53 -9.74 4.53 -234.66 -1.06 -10.80 16 14 C 0.06 1.08 5.29 -3.83 -0.02 1.06 16 15 C -0.13 -1.98 5.42 -26.65 -0.14 -2.12 16 16 C 0.18 2.23 2.86 -67.81 -0.19 2.04 16 17 N -0.63 -7.07 2.85 -171.09 -0.49 -7.55 16 18 C 0.06 0.38 7.67 -3.15 -0.02 0.36 16 19 C 0.04 0.24 8.23 37.72 0.31 0.55 16 20 O -0.33 -4.03 11.09 -37.82 -0.42 -4.45 16 21 C 0.64 9.32 8.30 53.71 0.45 9.77 16 22 O -0.50 -9.74 14.98 -19.12 -0.29 -10.03 16 23 C -0.13 -1.77 5.42 -26.65 -0.14 -1.91 16 24 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.34 8.39 9.04 45.56 0.41 8.80 16 27 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.06 1.30 7.98 -51.92 -0.41 0.88 16 29 H 0.09 1.82 6.21 -51.93 -0.32 1.50 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.74 6.72 -51.92 -0.35 1.39 16 33 H 0.09 0.88 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.54 6.74 -51.93 -0.35 1.19 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -35.11 328.38 -7.88 -42.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.54 Total: 5.78 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.28 Total: 3.22 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.84 Total: -43.41 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.15 Total: -29.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.11 -7.88 -42.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336133441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.268 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds