Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53001 * 114.39140 * 272.67779 * 10 9 8 12 12 N 1.46488 * 114.08867 * 139.78131 * 10 9 8 13 13 C 1.34782 * 120.00087 * 86.55901 * 12 10 9 14 14 O 1.21684 * 120.00017 * 359.97438 * 13 12 10 15 15 C 1.46376 * 119.99884 * 180.02562 * 13 12 10 16 16 H 1.07997 * 120.00450 * 359.97438 * 15 13 12 17 17 C 1.40057 * 119.99889 * 180.02562 * 15 13 12 18 18 N 1.30665 * 119.99680 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99855 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47136 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47081 * 119.99895 * 19 17 15 22 22 H 1.48499 * 109.46854 * 239.99812 * 19 17 15 23 23 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 34 34 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 35 35 H 1.09003 * 109.47262 * 153.58364 * 11 10 9 36 36 H 1.09003 * 109.46944 * 273.58550 * 11 10 9 37 37 H 1.08996 * 109.47358 * 33.58556 * 11 10 9 38 38 H 0.97003 * 120.00190 * 266.56242 * 12 10 9 39 39 H 0.97005 * 120.00033 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.46755 * 321.86921 * 23 8 6 41 41 H 1.09004 * 113.46677 * 92.30306 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8250 -2.8530 -5.0847 12 7 2.9243 -2.3458 -6.3513 13 6 3.1818 -3.6329 -6.6570 14 8 2.7344 -4.5250 -5.9608 15 6 4.0007 -3.9577 -7.8260 16 1 4.3982 -3.1660 -8.4438 17 6 4.2679 -5.2953 -8.1441 18 7 3.7866 -6.2531 -7.3970 19 14 5.3135 -5.7097 -9.6355 20 1 5.7341 -4.4549 -10.3093 21 1 6.5156 -6.4665 -9.2025 22 1 4.5216 -6.5371 -10.5807 23 6 1.8960 -0.5168 -4.9572 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.9504 -1.6754 -4.0134 34 1 2.7529 -2.7752 -3.2054 35 1 0.1135 -2.5136 -5.8375 36 1 1.0609 -3.9035 -5.2552 37 1 0.3887 -2.7350 -4.0929 38 1 3.2813 -1.6347 -6.9061 39 1 3.9713 -7.1795 -7.6174 40 1 0.8962 -0.1734 -5.2231 41 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336257064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -76.918271 kcal Electronic energy + Delta-G solvation = -23132.396675 eV Core-core repulsion = 19628.249466 eV Total energy + Delta-G solvation = -3504.147209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85079 -39.62809 -37.05520 -36.26443 -34.06419 -32.88739 -32.11203 -29.61073 -27.51874 -27.46835 -26.89893 -26.13777 -25.86339 -22.18272 -20.68945 -19.30219 -18.45689 -17.59580 -17.28827 -16.62203 -16.35198 -15.43359 -15.26037 -15.09445 -14.35524 -14.19086 -13.95257 -13.56193 -13.08849 -12.82590 -12.79331 -12.58379 -12.32956 -12.26746 -11.98270 -11.94769 -11.72763 -11.49726 -11.39256 -11.28156 -11.22806 -11.06450 -11.02712 -10.55655 -10.38050 -10.25382 -10.10696 -9.96250 -8.92351 -8.64934 -7.69611 -7.54774 -6.24809 -4.71799 2.06879 2.96454 3.09424 3.18548 3.22266 3.86966 4.05941 4.40900 4.62643 4.64684 4.67163 4.79557 4.81444 5.07120 5.29336 5.34505 5.37779 5.41857 5.56199 5.57000 5.64188 5.72312 5.75467 5.80695 5.85250 5.88897 6.05537 6.18610 6.24140 6.30101 6.35456 6.45380 6.55439 7.15430 7.37971 7.77921 7.86797 7.98268 8.24368 8.44204 8.96094 9.41621 10.51239 10.69308 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037501 B = 0.003366 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.463073 B = 8315.338863 C = 8492.343231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.182 4.182 4 C -0.140 4.140 5 O -0.359 6.359 6 C 0.683 3.317 7 O -0.576 6.576 8 N -0.629 5.629 9 C 0.093 3.907 10 C 0.164 3.836 11 C -0.147 4.147 12 N -0.749 5.749 13 C 0.558 3.442 14 O -0.570 6.570 15 C -0.543 4.543 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.765 5.765 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.123 3.877 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.385 0.615 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 11.125 10.738 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.239 4.239 4 C -0.197 4.197 5 O -0.274 6.274 6 C 0.440 3.560 7 O -0.467 6.467 8 N -0.370 5.370 9 C -0.031 4.031 10 C 0.074 3.926 11 C -0.205 4.205 12 N -0.405 5.405 13 C 0.363 3.637 14 O -0.453 6.453 15 C -0.580 4.580 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.393 5.393 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C 0.001 3.999 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.217 0.783 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.233 10.668 11.565 16.063 hybrid contribution 0.800 0.343 -0.849 1.216 sum -2.434 11.011 10.716 15.556 Atomic orbital electron populations 1.22519 0.94081 1.03007 1.04419 1.22050 0.94388 0.92142 0.81657 1.22508 1.01506 0.95508 1.04427 1.21850 1.02265 1.01219 0.94405 1.86341 1.71328 1.56356 1.13383 1.17170 0.78733 0.80272 0.79866 1.90864 1.42366 1.26873 1.86596 1.47899 1.53117 1.32438 1.03581 1.23809 0.95747 0.87061 0.96530 1.21389 0.92636 0.91809 0.86772 1.21985 0.93595 1.04784 1.00088 1.46040 1.56166 1.09511 1.28740 1.18208 0.80624 0.79295 0.85611 1.90502 1.55313 1.45813 1.53633 1.20910 1.33597 0.92555 1.10957 0.91302 1.25692 0.94672 0.96106 0.96727 1.70010 1.34997 1.00071 1.34232 0.86321 0.79829 0.79105 0.81541 1.18782 1.20185 1.20186 1.23409 1.02656 0.97678 0.76188 0.89370 0.92104 0.91324 0.91289 0.92259 0.89420 0.91376 0.91495 0.90272 0.89581 0.89958 0.92976 0.86907 0.93427 0.78283 0.92082 0.89921 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 2 C 0.13 1.65 1.13 -90.62 -0.10 1.54 16 3 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 4 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 5 O -0.36 -5.62 9.91 -40.29 -0.40 -6.02 16 6 C 0.68 11.60 8.26 54.06 0.45 12.05 16 7 O -0.58 -10.36 12.66 -19.28 -0.24 -10.61 16 8 N -0.63 -10.35 3.49 -190.89 -0.67 -11.02 16 9 C 0.09 1.60 8.01 -8.37 -0.07 1.53 16 10 C 0.16 2.92 1.48 -131.58 -0.20 2.72 16 11 C -0.15 -2.77 9.12 37.16 0.34 -2.43 16 12 N -0.75 -15.01 5.37 -48.71 -0.26 -15.27 16 13 C 0.56 14.43 7.52 -12.98 -0.10 14.33 16 14 O -0.57 -16.63 12.43 5.20 0.06 -16.56 16 15 C -0.54 -14.32 9.54 -35.63 -0.34 -14.66 16 16 H 0.07 1.67 7.85 -52.49 -0.41 1.25 16 17 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 18 N -0.76 -21.73 11.83 55.55 0.66 -21.07 16 19 Si 0.91 19.26 29.56 -169.99 -5.02 14.23 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C 0.12 1.83 7.91 -8.51 -0.07 1.76 16 24 H 0.09 1.24 5.88 -51.93 -0.31 0.94 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 2.60 5.32 -51.93 -0.28 2.32 16 37 H 0.05 0.84 7.93 -51.93 -0.41 0.42 16 38 H 0.38 6.64 8.64 -40.82 -0.35 6.29 16 39 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 40 H 0.08 1.18 8.12 -51.93 -0.42 0.75 16 41 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -32.03 338.08 -6.27 -38.31 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.27 Total: 8.42 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 0.77 Total: 14.50 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.27 Total: -47.36 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.58 Total: -33.19 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.03 -6.27 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336257064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.610 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds