Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53001 * 114.39140 * 272.67779 * 10 9 8 12 12 N 1.46488 * 114.08867 * 139.78131 * 10 9 8 13 13 C 1.34782 * 120.00087 * 86.55901 * 12 10 9 14 14 O 1.21684 * 120.00017 * 359.97438 * 13 12 10 15 15 C 1.46376 * 119.99884 * 180.02562 * 13 12 10 16 16 H 1.07997 * 120.00450 * 359.97438 * 15 13 12 17 17 C 1.40057 * 119.99889 * 180.02562 * 15 13 12 18 18 N 1.30665 * 119.99680 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99855 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47136 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47081 * 119.99895 * 19 17 15 22 22 H 1.48499 * 109.46854 * 239.99812 * 19 17 15 23 23 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 33 33 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 34 34 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 35 35 H 1.09003 * 109.47262 * 153.58364 * 11 10 9 36 36 H 1.09003 * 109.46944 * 273.58550 * 11 10 9 37 37 H 1.08996 * 109.47358 * 33.58556 * 11 10 9 38 38 H 0.97003 * 120.00190 * 266.56242 * 12 10 9 39 39 H 0.97005 * 120.00033 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.46755 * 321.86921 * 23 8 6 41 41 H 1.09004 * 113.46677 * 92.30306 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8250 -2.8530 -5.0847 12 7 2.9243 -2.3458 -6.3513 13 6 3.1818 -3.6329 -6.6570 14 8 2.7344 -4.5250 -5.9608 15 6 4.0007 -3.9577 -7.8260 16 1 4.3982 -3.1660 -8.4438 17 6 4.2679 -5.2953 -8.1441 18 7 3.7866 -6.2531 -7.3970 19 14 5.3135 -5.7097 -9.6355 20 1 5.7341 -4.4549 -10.3093 21 1 6.5156 -6.4665 -9.2025 22 1 4.5216 -6.5371 -10.5807 23 6 1.8960 -0.5168 -4.9572 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2493 32 1 1.6767 -0.2075 2.1392 33 1 3.9504 -1.6754 -4.0134 34 1 2.7529 -2.7752 -3.2054 35 1 0.1135 -2.5136 -5.8375 36 1 1.0609 -3.9035 -5.2552 37 1 0.3887 -2.7350 -4.0929 38 1 3.2813 -1.6347 -6.9061 39 1 3.9713 -7.1795 -7.6174 40 1 0.8962 -0.1734 -5.2231 41 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336257064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -99.538854 kcal Electronic energy + Delta-G solvation = -23133.377578 eV Core-core repulsion = 19628.249466 eV Total energy + Delta-G solvation = -3505.128111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14388 -40.95314 -38.78134 -37.62838 -35.16921 -34.71215 -33.94251 -31.19842 -28.37540 -28.33275 -28.29912 -28.09450 -27.19571 -23.54235 -22.23639 -20.61703 -19.95531 -19.15577 -18.85813 -17.78027 -17.67213 -17.37546 -16.53207 -16.28098 -15.96109 -15.30402 -15.21435 -14.88703 -14.67991 -14.37984 -14.24275 -13.99632 -13.37026 -13.33022 -13.13660 -12.93772 -12.92170 -12.89294 -12.88026 -12.75390 -12.67845 -12.53773 -12.46600 -12.28030 -11.92879 -11.60727 -11.42349 -11.17929 -10.88008 -9.98740 -9.58119 -9.43402 -8.21487 -6.77511 0.87789 1.44011 1.45917 1.61765 1.66435 2.28632 2.51704 2.66338 3.07275 3.31404 3.66692 3.73962 3.76115 3.78470 3.92833 4.06056 4.15357 4.38596 4.48344 4.56362 4.60590 4.62077 4.74600 4.76294 4.81064 4.85010 4.85579 4.89225 4.93213 5.09572 5.26867 5.31142 5.38628 5.43013 5.52175 5.94968 6.27051 6.32349 6.54960 6.95237 7.16769 7.61922 8.56957 8.74763 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037501 B = 0.003366 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.463073 B = 8315.338863 C = 8492.343231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 C -0.176 4.176 4 C -0.136 4.136 5 O -0.372 6.372 6 C 0.680 3.320 7 O -0.588 6.588 8 N -0.631 5.631 9 C 0.098 3.902 10 C 0.153 3.847 11 C -0.138 4.138 12 N -0.734 5.734 13 C 0.547 3.453 14 O -0.611 6.611 15 C -0.570 4.570 16 H 0.087 0.913 17 C 0.033 3.967 18 N -0.818 5.818 19 Si 0.991 3.009 20 H -0.248 1.248 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.136 3.864 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.401 0.599 39 H 0.272 0.728 40 H 0.094 0.906 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 12.861 10.776 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.083 3.917 3 C -0.234 4.234 4 C -0.192 4.192 5 O -0.287 6.287 6 C 0.437 3.563 7 O -0.480 6.480 8 N -0.373 5.373 9 C -0.027 4.027 10 C 0.064 3.936 11 C -0.196 4.196 12 N -0.389 5.389 13 C 0.351 3.649 14 O -0.497 6.497 15 C -0.606 4.606 16 H 0.106 0.894 17 C -0.183 4.183 18 N -0.447 5.447 19 Si 0.811 3.189 20 H -0.171 1.171 21 H -0.198 1.198 22 H -0.198 1.198 23 C 0.015 3.985 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.526 12.468 11.611 17.224 hybrid contribution 0.514 -0.145 -0.751 0.921 sum -2.012 12.324 10.860 16.549 Atomic orbital electron populations 1.22475 0.93797 1.02776 1.04532 1.22539 0.94873 0.92970 0.81328 1.22453 1.01539 0.94849 1.04521 1.21891 1.02342 1.01091 0.93924 1.86357 1.71520 1.57014 1.13791 1.17272 0.78561 0.80193 0.80263 1.90865 1.42842 1.27383 1.86868 1.47898 1.52968 1.32162 1.04245 1.23689 0.96269 0.87001 0.95716 1.21449 0.91956 0.94074 0.86155 1.21798 0.94621 1.02328 1.00884 1.45600 1.55721 1.08224 1.29354 1.18447 0.80389 0.80594 0.85484 1.90495 1.56649 1.47730 1.54824 1.21447 1.33984 0.93587 1.11625 0.89447 1.26831 0.95678 0.95801 0.99970 1.70168 1.37057 1.00724 1.36791 0.85061 0.77557 0.79269 0.76975 1.17070 1.19769 1.19814 1.23393 1.04431 0.95279 0.75376 0.91964 0.92479 0.88417 0.88465 0.92123 0.91968 0.91742 0.91419 0.87253 0.88700 0.91684 0.91840 0.91150 0.92625 0.76401 0.91768 0.88721 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.37 71.98 0.60 -3.34 16 2 C 0.12 2.74 1.13 -10.79 -0.01 2.72 16 3 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16 4 C -0.14 -2.25 8.85 71.98 0.64 -1.61 16 5 O -0.37 -11.43 9.91 -55.38 -0.55 -11.98 16 6 C 0.68 22.66 8.26 129.79 1.07 23.74 16 7 O -0.59 -20.76 12.66 19.80 0.25 -20.51 16 8 N -0.63 -20.18 3.49 -988.25 -3.45 -23.62 16 9 C 0.10 3.35 8.01 83.27 0.67 4.02 16 10 C 0.15 5.38 1.48 4.16 0.01 5.39 16 11 C -0.14 -5.32 9.12 71.98 0.66 -4.66 16 12 N -0.73 -29.05 5.37 -426.24 -2.29 -31.34 16 13 C 0.55 28.75 7.52 86.36 0.65 29.40 16 14 O -0.61 -37.07 12.43 -4.30 -0.05 -37.12 16 15 C -0.57 -30.03 9.54 24.83 0.24 -29.79 16 16 H 0.09 4.12 7.85 -2.91 -0.02 4.09 16 17 C 0.03 1.73 5.50 85.31 0.47 2.20 16 18 N -0.82 -47.74 11.83 21.84 0.26 -47.48 16 19 Si 0.99 39.28 29.56 68.60 2.03 41.30 16 20 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 C 0.14 3.80 7.91 83.17 0.66 4.46 16 24 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 3.39 5.32 -2.39 -0.01 3.38 16 37 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 38 H 0.40 13.20 8.64 -92.71 -0.80 12.40 16 39 H 0.27 14.51 8.29 -92.70 -0.77 13.74 16 40 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 41 H 0.12 2.62 8.13 -2.39 -0.02 2.60 16 Total: -1.00 -71.68 338.08 2.68 -69.00 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.24 Total: 32.33 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 6.25 Total: 29.41 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.48 Total: -102.44 kcal Atomic # 8 Polarization: -69.26 SS G_CDS: -0.35 Total: -69.61 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Total: -71.68 2.68 -69.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336257064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.537 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds