Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47237 * 2 1 4 4 C 1.34226 * 117.00017 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00055 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00125 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47148 * 175.22648 * 6 4 3 8 8 H 1.09007 * 109.87630 * 306.90870 * 7 6 4 9 9 C 1.54320 * 109.88252 * 67.92310 * 7 6 4 10 10 C 1.55404 * 102.82991 * 141.51766 * 9 7 6 11 11 C 1.54913 * 101.66271 * 324.66407 * 10 9 7 12 12 N 1.47017 * 109.88182 * 185.89262 * 7 6 4 13 13 C 1.34778 * 125.65122 * 61.60582 * 12 7 6 14 14 O 1.21588 * 119.99603 * 5.01569 * 13 12 7 15 15 N 1.34776 * 120.00264 * 185.01192 * 13 12 7 16 16 C 1.46497 * 120.00128 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47192 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99865 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47464 * 59.99729 * 21 19 17 23 23 H 1.48494 * 109.47409 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47306 * 300.00016 * 21 19 17 25 25 H 1.09006 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47265 * 299.99631 * 1 2 3 27 27 H 1.09005 * 109.47400 * 59.99814 * 1 2 3 28 28 H 1.09000 * 109.46490 * 239.99917 * 2 1 3 29 29 H 1.08996 * 109.46900 * 120.00493 * 2 1 3 30 30 H 1.08990 * 109.47131 * 295.22772 * 6 4 3 31 31 H 1.09000 * 109.47092 * 55.22820 * 6 4 3 32 32 H 1.08999 * 110.72008 * 259.97197 * 9 7 6 33 33 H 1.09003 * 110.72261 * 23.24764 * 9 7 6 34 34 H 1.08998 * 111.03907 * 206.52681 * 10 9 7 35 35 H 1.08999 * 110.89195 * 82.73433 * 10 9 7 36 36 H 1.09001 * 110.36417 * 278.08429 * 11 10 9 37 37 H 1.09001 * 110.36494 * 155.76377 * 11 10 9 38 38 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 39 39 H 1.09008 * 109.46681 * 300.00157 * 16 15 13 40 40 H 1.08995 * 109.47314 * 60.00249 * 16 15 13 41 41 H 0.96996 * 119.99782 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4440 2.8591 0.1217 8 1 5.7167 2.2514 0.9846 9 6 6.0412 2.2454 -1.1621 10 6 7.3386 3.0753 -1.3700 11 6 6.8964 4.4762 -0.8784 12 7 6.0043 4.2107 0.2648 13 6 5.7448 5.0659 1.2737 14 8 5.0618 4.7077 2.2137 15 7 6.2423 6.3180 1.2407 16 6 5.9607 7.2474 2.3375 17 6 6.6269 8.5701 2.0589 18 1 7.2030 8.7048 1.1553 19 6 6.5012 9.6082 2.9575 20 7 5.7993 9.4443 4.0576 21 14 7.3276 11.2475 2.6125 22 1 6.8038 11.8081 1.3411 23 1 7.0410 12.1899 3.7236 24 1 8.7947 11.0479 2.4980 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.6553 3.4407 -0.9284 31 1 3.5178 3.4968 0.8453 32 1 6.2747 1.1912 -1.0131 33 1 5.3615 2.3757 -2.0042 34 1 7.6217 3.1018 -2.4223 35 1 8.1518 2.6852 -0.7580 36 1 6.3571 5.0019 -1.6664 37 1 7.7617 5.0562 -0.5577 38 1 6.7869 6.6039 0.4905 39 1 4.8838 7.3940 2.4220 40 1 6.3456 6.8357 3.2705 41 1 5.7105 10.1747 4.6896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339391823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = -124.176729 kcal Electronic energy + Delta-G solvation = -22600.334803 eV Core-core repulsion = 19094.138313 eV Total energy + Delta-G solvation = -3506.196490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75034 -39.69442 -37.43495 -36.54519 -34.19817 -32.62774 -32.15254 -31.33094 -31.12945 -27.07980 -26.81705 -23.79444 -23.12829 -22.05492 -21.42359 -20.58243 -19.11615 -18.12397 -17.53816 -16.89195 -16.68386 -15.99759 -15.55293 -15.09780 -14.73817 -14.54163 -14.23743 -13.72880 -13.53469 -13.30468 -13.07150 -12.85534 -12.78459 -12.53990 -12.18401 -11.99330 -11.92707 -11.79263 -11.59204 -11.22192 -10.96668 -10.90756 -10.85634 -10.81380 -10.68134 -10.48863 -10.28935 -9.39656 -9.37482 -8.72189 -8.44172 -7.73967 -6.14438 -4.21141 2.16839 2.48848 3.20748 3.26393 3.31565 3.33715 3.86847 4.31875 4.47877 4.48985 4.67932 4.69269 4.77832 4.81273 4.93389 5.02623 5.10646 5.21511 5.21719 5.31511 5.45362 5.52720 5.55639 5.66607 5.71963 5.75372 5.85070 5.88491 6.01645 6.20495 6.35998 6.54579 7.19010 7.50754 7.57585 7.57982 7.69644 7.88505 8.03404 8.76061 8.90068 9.31686 9.47998 10.95780 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003410 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.514440 B = 8210.012481 C = 9164.871151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.473 3.527 5 O -0.510 6.510 6 C -0.130 4.130 7 C 0.173 3.827 8 H 0.082 0.918 9 C -0.122 4.122 10 C -0.132 4.132 11 C 0.100 3.900 12 N -0.641 5.641 13 C 0.711 3.289 14 O -0.596 6.596 15 N -0.725 5.725 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.387 0.613 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -16.370 -13.708 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.398 6.398 6 C -0.169 4.169 7 C 0.068 3.932 8 H 0.100 0.900 9 C -0.160 4.160 10 C -0.170 4.170 11 C -0.023 4.023 12 N -0.382 5.382 13 C 0.413 3.587 14 O -0.474 6.474 15 N -0.377 5.377 16 C 0.146 3.854 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.219 0.781 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.148 -16.721 -12.705 21.406 hybrid contribution 0.636 0.965 -0.449 1.240 sum -3.512 -15.756 -13.154 20.823 Atomic orbital electron populations 1.21811 0.92701 1.02847 1.03676 1.23005 0.95363 0.80391 1.02503 1.86537 1.24782 1.32231 1.84018 1.23644 0.80395 0.92654 0.71751 1.90635 1.60266 1.43265 1.45683 1.21901 0.97073 0.91087 1.06793 1.20970 0.89590 0.83489 0.99188 0.90044 1.22751 0.96769 1.00441 0.96049 1.22819 0.97785 0.94684 1.01713 1.22232 0.93782 0.97475 0.88847 1.47720 1.50024 1.15727 1.24719 1.15712 0.80841 0.80945 0.81251 1.90872 1.44784 1.77315 1.34476 1.45764 1.54592 1.10582 1.26771 1.18996 0.96847 0.85636 0.83921 1.21179 1.33494 0.96513 1.06886 0.92041 1.24939 0.95201 0.99075 0.94765 1.69970 1.39254 1.32924 1.10125 0.86470 0.79761 0.82728 0.77907 1.20092 1.21079 1.20092 0.90332 0.91320 0.91499 0.91335 0.91214 0.87613 0.86073 0.89245 0.91028 0.89995 0.90526 0.91722 0.90618 0.78074 0.95660 0.95717 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.49 10.22 -39.25 -0.40 -4.89 16 4 C 0.47 6.35 7.78 36.01 0.28 6.63 16 5 O -0.51 -7.49 14.49 -18.75 -0.27 -7.76 16 6 C -0.13 -1.76 5.30 -27.88 -0.15 -1.91 16 7 C 0.17 2.43 2.49 -66.96 -0.17 2.27 16 8 H 0.08 1.31 7.98 -51.93 -0.41 0.90 16 9 C -0.12 -1.29 5.45 -24.76 -0.14 -1.43 16 10 C -0.13 -1.24 7.09 -24.45 -0.17 -1.41 16 11 C 0.10 1.17 6.48 -2.53 -0.02 1.16 16 12 N -0.64 -10.18 3.06 -168.69 -0.52 -10.70 16 13 C 0.71 14.97 8.21 -86.92 -0.71 14.25 16 14 O -0.60 -14.86 15.51 5.29 0.08 -14.78 16 15 N -0.73 -15.77 5.51 -66.41 -0.37 -16.14 16 16 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 17 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 18 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.11 1.22 8.00 -51.93 -0.42 0.80 16 31 H 0.12 1.97 6.86 -51.93 -0.36 1.62 16 32 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 33 H 0.07 0.68 7.76 -51.93 -0.40 0.27 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.88 7.50 -51.93 -0.39 0.49 16 38 H 0.39 7.29 6.92 -40.82 -0.28 7.00 16 39 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -33.41 342.35 -7.92 -41.33 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.42 Total: 3.98 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.91 Total: 13.40 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.15 Total: -52.29 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.59 Total: -27.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.41 -7.92 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339391823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.843 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds