Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47237 * 2 1 4 4 C 1.34226 * 117.00017 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00055 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00125 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47148 * 175.22648 * 6 4 3 8 8 H 1.09007 * 109.87630 * 306.90870 * 7 6 4 9 9 C 1.54320 * 109.88252 * 67.92310 * 7 6 4 10 10 C 1.55404 * 102.82991 * 141.51766 * 9 7 6 11 11 C 1.54913 * 101.66271 * 324.66407 * 10 9 7 12 12 N 1.47017 * 109.88182 * 185.89262 * 7 6 4 13 13 C 1.34778 * 125.65122 * 61.60582 * 12 7 6 14 14 O 1.21588 * 119.99603 * 5.01569 * 13 12 7 15 15 N 1.34776 * 120.00264 * 185.01192 * 13 12 7 16 16 C 1.46497 * 120.00128 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47192 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99865 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47464 * 59.99729 * 21 19 17 23 23 H 1.48494 * 109.47409 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47306 * 300.00016 * 21 19 17 25 25 H 1.09006 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47265 * 299.99631 * 1 2 3 27 27 H 1.09005 * 109.47400 * 59.99814 * 1 2 3 28 28 H 1.09000 * 109.46490 * 239.99917 * 2 1 3 29 29 H 1.08996 * 109.46900 * 120.00493 * 2 1 3 30 30 H 1.08990 * 109.47131 * 295.22772 * 6 4 3 31 31 H 1.09000 * 109.47092 * 55.22820 * 6 4 3 32 32 H 1.08999 * 110.72008 * 259.97197 * 9 7 6 33 33 H 1.09003 * 110.72261 * 23.24764 * 9 7 6 34 34 H 1.08998 * 111.03907 * 206.52681 * 10 9 7 35 35 H 1.08999 * 110.89195 * 82.73433 * 10 9 7 36 36 H 1.09001 * 110.36417 * 278.08429 * 11 10 9 37 37 H 1.09001 * 110.36494 * 155.76377 * 11 10 9 38 38 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 39 39 H 1.09008 * 109.46681 * 300.00157 * 16 15 13 40 40 H 1.08995 * 109.47314 * 60.00249 * 16 15 13 41 41 H 0.96996 * 119.99782 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.4440 2.8591 0.1217 8 1 5.7167 2.2514 0.9846 9 6 6.0412 2.2454 -1.1621 10 6 7.3386 3.0753 -1.3700 11 6 6.8964 4.4762 -0.8784 12 7 6.0043 4.2107 0.2648 13 6 5.7448 5.0659 1.2737 14 8 5.0618 4.7077 2.2137 15 7 6.2423 6.3180 1.2407 16 6 5.9607 7.2474 2.3375 17 6 6.6269 8.5701 2.0589 18 1 7.2030 8.7048 1.1553 19 6 6.5012 9.6082 2.9575 20 7 5.7993 9.4443 4.0576 21 14 7.3276 11.2475 2.6125 22 1 6.8038 11.8081 1.3411 23 1 7.0410 12.1899 3.7236 24 1 8.7947 11.0479 2.4980 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.6553 3.4407 -0.9284 31 1 3.5178 3.4968 0.8453 32 1 6.2747 1.1912 -1.0131 33 1 5.3615 2.3757 -2.0042 34 1 7.6217 3.1018 -2.4223 35 1 8.1518 2.6852 -0.7580 36 1 6.3571 5.0019 -1.6664 37 1 7.7617 5.0562 -0.5577 38 1 6.7869 6.6039 0.4905 39 1 4.8838 7.3940 2.4220 40 1 6.3456 6.8357 3.2705 41 1 5.7105 10.1747 4.6896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339391823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = -146.599721 kcal Electronic energy + Delta-G solvation = -22601.307137 eV Core-core repulsion = 19094.138313 eV Total energy + Delta-G solvation = -3507.168824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87662 -41.05867 -38.80033 -37.61890 -36.15716 -34.48237 -33.20948 -32.46561 -32.21067 -29.07271 -27.83964 -25.24289 -24.28955 -23.47077 -22.38488 -21.75987 -20.73628 -19.49282 -18.71713 -18.06226 -17.88037 -17.67152 -17.04628 -16.52270 -16.38358 -15.79890 -15.53148 -15.07802 -14.63499 -14.39939 -14.31460 -14.09644 -13.97445 -13.78131 -13.61477 -13.49181 -13.00009 -12.89645 -12.83677 -12.65767 -12.51661 -12.24431 -12.08483 -11.89794 -11.66206 -11.59070 -11.53199 -11.49006 -11.17016 -10.78294 -10.06675 -9.44934 -8.27316 -6.44053 1.08330 1.40472 1.45726 1.48879 1.57149 1.88157 2.19632 2.39985 3.07561 3.25146 3.50310 3.61500 3.79145 3.82055 3.99090 4.06060 4.11536 4.24094 4.32690 4.36256 4.58877 4.67406 4.78072 4.84424 4.90250 4.93197 5.00911 5.07522 5.12173 5.15444 5.27371 5.33398 5.38767 5.43359 5.50459 5.71916 5.85398 6.20638 6.64828 6.67254 7.17332 7.25974 7.68479 8.84898 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003410 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.514440 B = 8210.012481 C = 9164.871151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.477 3.523 5 O -0.524 6.524 6 C -0.125 4.125 7 C 0.166 3.834 8 H 0.053 0.947 9 C -0.111 4.111 10 C -0.118 4.118 11 C 0.089 3.911 12 N -0.634 5.634 13 C 0.707 3.293 14 O -0.644 6.644 15 N -0.719 5.719 16 C 0.287 3.713 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.403 0.597 39 H -0.013 1.013 40 H -0.016 1.016 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -16.287 -16.873 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.321 3.679 5 O -0.413 6.413 6 C -0.164 4.164 7 C 0.061 3.939 8 H 0.071 0.929 9 C -0.149 4.149 10 C -0.156 4.156 11 C -0.033 4.033 12 N -0.372 5.372 13 C 0.409 3.591 14 O -0.527 6.527 15 N -0.373 5.373 16 C 0.164 3.836 17 C -0.593 4.593 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.211 1.211 24 H -0.187 1.187 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.239 0.761 39 H 0.005 0.995 40 H 0.001 0.999 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.062 -16.685 -15.954 23.288 hybrid contribution 0.242 0.807 0.543 1.002 sum -2.820 -15.878 -15.412 22.307 Atomic orbital electron populations 1.21842 0.90664 1.04459 1.03545 1.23330 0.96993 0.78944 1.02831 1.86530 1.24051 1.34197 1.83640 1.23485 0.80750 0.92237 0.71419 1.90622 1.60653 1.43576 1.46474 1.21796 0.96692 0.91295 1.06595 1.21158 0.90201 0.82198 1.00326 0.92913 1.22719 0.97585 1.00248 0.94308 1.22828 0.96799 0.92227 1.03774 1.22642 0.93374 0.99608 0.87653 1.47658 1.49930 1.15359 1.24275 1.15848 0.80286 0.81141 0.81851 1.90834 1.46743 1.78198 1.36900 1.45330 1.55295 1.10467 1.26171 1.18413 0.94271 0.86909 0.84042 1.21554 1.33572 0.96385 1.07768 0.89836 1.26070 0.95608 1.03646 0.94218 1.70142 1.40901 1.34460 1.11463 0.85188 0.78974 0.76878 0.78057 1.18535 1.21140 1.18651 0.87822 0.91997 0.91052 0.90265 0.91662 0.85152 0.89373 0.89124 0.88971 0.86311 0.90728 0.89418 0.90289 0.76088 0.99516 0.99854 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 0.96 6.19 71.98 0.45 1.41 16 3 O -0.37 -9.13 10.22 -51.38 -0.53 -9.65 16 4 C 0.48 12.81 7.78 71.24 0.55 13.37 16 5 O -0.52 -15.19 14.49 21.96 0.32 -14.87 16 6 C -0.13 -3.43 5.30 29.85 0.16 -3.27 16 7 C 0.17 4.64 2.49 45.34 0.11 4.75 16 8 H 0.05 1.77 7.98 -2.38 -0.02 1.75 16 9 C -0.11 -2.06 5.45 31.87 0.17 -1.88 16 10 C -0.12 -1.80 7.09 32.07 0.23 -1.57 16 11 C 0.09 1.85 6.48 86.86 0.56 2.41 16 12 N -0.63 -19.93 3.06 -805.89 -2.47 -22.40 16 13 C 0.71 30.82 8.21 179.05 1.47 32.29 16 14 O -0.64 -34.25 15.51 -3.99 -0.06 -34.32 16 15 N -0.72 -31.99 5.51 -482.29 -2.66 -34.65 16 16 C 0.29 16.16 5.43 85.63 0.46 16.63 16 17 C -0.55 -30.45 9.28 25.60 0.24 -30.22 16 18 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 19 C 0.00 0.23 5.46 84.65 0.46 0.70 16 20 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 21 Si 0.99 42.30 29.54 68.60 2.03 44.33 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 23 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.13 2.84 8.00 -2.39 -0.02 2.82 16 31 H 0.09 3.06 6.86 -2.39 -0.02 3.05 16 32 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 33 H 0.09 1.38 7.76 -2.39 -0.02 1.36 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.62 7.50 -2.39 -0.02 1.61 16 38 H 0.40 14.93 6.92 -92.70 -0.64 14.29 16 39 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -76.65 342.35 2.91 -73.75 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.38 Total: 20.73 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 5.61 Total: 33.45 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.84 Total: -113.41 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -0.27 Total: -58.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -76.65 2.91 -73.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339391823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.854 kcal (2) G-P(sol) polarization free energy of solvation -76.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds