Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 55.00215 * 4 3 2 6 6 O 1.42903 * 109.47290 * 295.00270 * 4 3 2 7 7 C 1.50693 * 109.47356 * 175.00246 * 4 3 2 8 8 N 1.30299 * 126.35060 * 74.68695 * 7 4 3 9 9 N 1.28525 * 110.05535 * 179.82776 * 8 7 4 10 10 C 1.31213 * 109.86126 * 0.44738 * 9 8 7 11 11 N 1.38581 * 126.47618 * 179.69273 * 10 9 8 12 12 C 1.46901 * 111.00360 * 236.09364 * 11 10 9 13 13 C 1.46903 * 110.99603 * 0.04915 * 11 10 9 14 14 H 1.09000 * 109.47118 * 55.00146 * 13 11 10 15 15 C 1.52998 * 109.47055 * 294.99613 * 13 11 10 16 16 C 1.50703 * 109.47018 * 174.99421 * 13 11 10 17 17 H 1.08006 * 119.99873 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00297 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99400 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00464 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47470 * 89.99626 * 20 18 16 22 22 H 1.48497 * 109.47305 * 210.00188 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00153 * 20 18 16 24 24 N 1.36454 * 107.05600 * 359.73384 * 10 9 8 25 25 C 1.46493 * 127.13921 * 179.97438 * 24 10 9 26 26 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 28 28 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 30 30 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 31 31 H 0.96704 * 114.00116 * 300.00408 * 6 4 3 32 32 H 1.08994 * 109.46759 * 59.99854 * 12 11 10 33 33 H 1.08994 * 109.46948 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.46907 * 300.00130 * 12 11 10 35 35 H 1.09003 * 109.47164 * 60.00360 * 15 13 11 36 36 H 1.08997 * 109.46860 * 180.02562 * 15 13 11 37 37 H 1.08995 * 109.47204 * 299.99999 * 15 13 11 38 38 H 0.97007 * 119.99996 * 179.97438 * 19 18 16 39 39 H 1.09008 * 109.47130 * 269.99696 * 25 24 10 40 40 H 1.08996 * 109.47246 * 30.00137 * 25 24 10 41 41 H 1.09000 * 109.47462 * 150.00390 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5795 1.2220 7 6 4.1481 2.5558 -0.1231 8 7 4.2155 3.4590 0.8136 9 7 4.8050 4.5113 0.3697 10 6 5.1397 4.3380 -0.8872 11 7 5.7853 5.2547 -1.7017 12 6 5.0031 5.5226 -2.9160 13 6 6.0688 6.4983 -0.9730 14 1 6.6330 6.2691 -0.0689 15 6 4.7520 7.1787 -0.5937 16 6 6.8769 7.4207 -1.8489 17 1 7.1519 7.1139 -2.8473 18 6 7.2642 8.6566 -1.3763 19 7 6.9289 9.0303 -0.1607 20 14 8.2652 9.8003 -2.4623 21 1 7.3486 10.6644 -3.2487 22 1 9.1396 10.6492 -1.6138 23 1 9.1032 8.9964 -3.3878 24 7 4.7312 3.0851 -1.2411 25 6 4.8848 2.4409 -2.5478 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 3.7176 1.0751 2.0147 32 1 4.0293 5.9262 -2.6390 33 1 5.5324 6.2453 -3.5369 34 1 4.8672 4.5954 -3.4726 35 1 4.1676 6.5115 0.0399 36 1 4.9625 8.1016 -0.0534 37 1 4.1879 7.4079 -1.4977 38 1 7.2017 9.8997 0.1720 39 1 4.0140 2.6604 -3.1657 40 1 5.7821 2.8201 -3.0366 41 1 4.9723 1.3627 -2.4133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339447441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = 10.858814 kcal Electronic energy + Delta-G solvation = -23399.919670 eV Core-core repulsion = 19931.871512 eV Total energy + Delta-G solvation = -3468.048158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64649 -38.62041 -37.44560 -36.51389 -34.81048 -32.84641 -31.01202 -28.95444 -28.64503 -27.61013 -26.48592 -25.24229 -25.15682 -23.59426 -21.77078 -20.63346 -19.53142 -17.68077 -16.73337 -16.48928 -16.32455 -16.18319 -15.88425 -15.51481 -15.08463 -14.72014 -14.39456 -14.00720 -13.68876 -13.48860 -13.21282 -12.89243 -12.50291 -12.38907 -12.03087 -11.59692 -11.54970 -11.38495 -11.22472 -10.97535 -10.79544 -10.65714 -10.50080 -10.25988 -10.11921 -9.98531 -9.88569 -9.81706 -9.15720 -8.94828 -8.45516 -7.46243 -6.08137 -4.15893 2.02985 2.50214 3.17131 3.25763 3.33106 3.35644 3.48685 4.24149 4.28237 4.45995 4.55986 4.64793 4.69466 4.74849 5.05002 5.05904 5.09162 5.20615 5.23480 5.29239 5.36744 5.39063 5.53372 5.74095 5.92488 6.08638 6.23210 6.38943 6.71784 6.80105 6.84719 7.01950 7.13134 7.37523 7.47349 7.56561 7.68181 7.90740 8.21561 8.36818 8.85194 9.21670 9.48929 10.98270 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.003758 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.097717 B = 7449.017171 C = 7633.497551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.038 3.962 4 C 0.217 3.783 5 H 0.116 0.884 6 O -0.538 6.538 7 C 0.104 3.896 8 N -0.271 5.271 9 N -0.313 5.313 10 C 0.394 3.606 11 N -0.450 5.450 12 C 0.029 3.971 13 C 0.228 3.772 14 H 0.056 0.944 15 C -0.172 4.172 16 C -0.517 4.517 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.883 5.883 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.486 5.486 25 C 0.075 3.925 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.387 0.613 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -14.977 -4.686 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.040 4.040 4 C 0.155 3.845 5 H 0.133 0.867 6 O -0.342 6.342 7 C -0.164 4.164 8 N -0.112 5.112 9 N -0.158 5.158 10 C 0.039 3.961 11 N -0.173 5.173 12 C -0.118 4.118 13 C 0.124 3.876 14 H 0.074 0.926 15 C -0.231 4.231 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.521 5.521 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 N -0.184 5.184 25 C -0.068 4.068 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.053 -14.952 -3.783 18.411 hybrid contribution -0.298 1.138 -1.392 1.822 sum -10.352 -13.815 -5.174 18.022 Atomic orbital electron populations 1.22772 0.80785 1.02831 1.00149 1.87895 1.19767 1.26921 1.95472 1.23183 0.93556 0.85289 1.01982 1.19645 0.89948 0.85044 0.89893 0.86689 1.86576 1.81234 1.51166 1.15244 1.24923 1.06165 1.00077 0.85244 1.73826 1.15059 0.97579 1.24752 1.74874 1.17368 1.16323 1.07211 1.23413 0.94746 0.85352 0.92638 1.59324 1.37433 1.14311 1.06229 1.22472 0.96854 1.01000 0.91483 1.19412 0.93933 0.80543 0.93730 0.92610 1.22412 0.97694 1.03586 0.99410 1.21018 1.34008 0.99880 1.00644 0.91778 1.24897 0.95998 0.97799 0.95176 1.69918 1.45367 1.20979 1.15838 0.86463 0.79991 0.80548 0.80193 1.20690 1.21115 1.19822 1.46009 1.47263 1.13142 1.12019 1.22095 1.04103 0.98650 0.81936 0.93853 0.94109 0.89418 0.92351 0.91638 0.76404 0.94626 0.88439 0.93183 0.94449 0.88954 0.95938 0.92682 0.90584 0.88445 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.19 10.67 -40.08 -0.43 -4.62 16 3 C 0.04 0.41 5.55 37.16 0.21 0.62 16 4 C 0.22 2.69 3.66 -27.89 -0.10 2.59 16 5 H 0.12 1.24 6.96 -51.93 -0.36 0.88 16 6 O -0.54 -7.15 13.29 -40.08 -0.53 -7.69 16 7 C 0.10 1.66 6.93 -154.01 -1.07 0.59 16 8 N -0.27 -5.32 12.10 32.99 0.40 -4.92 16 9 N -0.31 -7.06 9.31 30.31 0.28 -6.77 16 10 C 0.39 8.06 6.75 -318.88 -2.15 5.91 16 11 N -0.45 -9.59 4.80 -176.09 -0.85 -10.44 16 12 C 0.03 0.51 8.60 60.07 0.52 1.03 16 13 C 0.23 5.77 2.03 -68.86 -0.14 5.63 16 14 H 0.06 1.63 7.95 -51.93 -0.41 1.22 16 15 C -0.17 -4.29 8.26 37.16 0.31 -3.98 16 16 C -0.52 -13.66 7.89 -34.44 -0.27 -13.93 16 17 H 0.06 1.64 6.77 -52.48 -0.36 1.28 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 N -0.49 -7.79 3.21 -121.46 -0.39 -8.18 16 25 C 0.08 0.81 9.29 59.84 0.56 1.36 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 4.40 8.97 45.56 0.41 4.81 16 32 H 0.04 0.64 6.51 -51.93 -0.34 0.31 16 33 H 0.10 1.78 6.41 -51.93 -0.33 1.45 16 34 H 0.05 0.69 5.41 -51.93 -0.28 0.41 16 35 H 0.04 0.92 5.88 -51.93 -0.31 0.61 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 37 H 0.02 0.52 6.47 -51.93 -0.34 0.18 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.08 0.65 7.85 -51.92 -0.41 0.24 16 40 H 0.10 1.06 7.57 -51.93 -0.39 0.67 16 41 H 0.09 0.70 7.11 -51.93 -0.37 0.33 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -32.65 329.79 -7.12 -39.77 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.05 Total: 3.75 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.13 Total: 2.81 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.07 Total: -54.65 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.96 Total: -12.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.65 -7.12 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339447441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.627 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds