Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 55.00215 * 4 3 2 6 6 O 1.42903 * 109.47290 * 295.00270 * 4 3 2 7 7 C 1.50693 * 109.47356 * 175.00246 * 4 3 2 8 8 N 1.30299 * 126.35060 * 74.68695 * 7 4 3 9 9 N 1.28525 * 110.05535 * 179.82776 * 8 7 4 10 10 C 1.31213 * 109.86126 * 0.44738 * 9 8 7 11 11 N 1.38581 * 126.47618 * 179.69273 * 10 9 8 12 12 C 1.46901 * 111.00360 * 236.09364 * 11 10 9 13 13 C 1.46903 * 110.99603 * 0.04915 * 11 10 9 14 14 H 1.09000 * 109.47118 * 55.00146 * 13 11 10 15 15 C 1.52998 * 109.47055 * 294.99613 * 13 11 10 16 16 C 1.50703 * 109.47018 * 174.99421 * 13 11 10 17 17 H 1.08006 * 119.99873 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00297 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99400 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00464 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47470 * 89.99626 * 20 18 16 22 22 H 1.48497 * 109.47305 * 210.00188 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00153 * 20 18 16 24 24 N 1.36454 * 107.05600 * 359.73384 * 10 9 8 25 25 C 1.46493 * 127.13921 * 179.97438 * 24 10 9 26 26 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 28 28 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 30 30 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 31 31 H 0.96704 * 114.00116 * 300.00408 * 6 4 3 32 32 H 1.08994 * 109.46759 * 59.99854 * 12 11 10 33 33 H 1.08994 * 109.46948 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.46907 * 300.00130 * 12 11 10 35 35 H 1.09003 * 109.47164 * 60.00360 * 15 13 11 36 36 H 1.08997 * 109.46860 * 180.02562 * 15 13 11 37 37 H 1.08995 * 109.47204 * 299.99999 * 15 13 11 38 38 H 0.97007 * 119.99996 * 179.97438 * 19 18 16 39 39 H 1.09008 * 109.47130 * 269.99696 * 25 24 10 40 40 H 1.08996 * 109.47246 * 30.00137 * 25 24 10 41 41 H 1.09000 * 109.47462 * 150.00390 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8410 6 8 3.9649 0.5795 1.2220 7 6 4.1481 2.5558 -0.1231 8 7 4.2155 3.4590 0.8136 9 7 4.8050 4.5113 0.3697 10 6 5.1397 4.3380 -0.8872 11 7 5.7853 5.2547 -1.7017 12 6 5.0031 5.5226 -2.9160 13 6 6.0688 6.4983 -0.9730 14 1 6.6330 6.2691 -0.0689 15 6 4.7520 7.1787 -0.5937 16 6 6.8769 7.4207 -1.8489 17 1 7.1519 7.1139 -2.8473 18 6 7.2642 8.6566 -1.3763 19 7 6.9289 9.0303 -0.1607 20 14 8.2652 9.8003 -2.4623 21 1 7.3486 10.6644 -3.2487 22 1 9.1396 10.6492 -1.6138 23 1 9.1032 8.9964 -3.3878 24 7 4.7312 3.0851 -1.2411 25 6 4.8848 2.4409 -2.5478 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 3.7176 1.0751 2.0147 32 1 4.0293 5.9262 -2.6390 33 1 5.5324 6.2453 -3.5369 34 1 4.8672 4.5954 -3.4726 35 1 4.1676 6.5115 0.0399 36 1 4.9625 8.1016 -0.0534 37 1 4.1879 7.4079 -1.4977 38 1 7.2017 9.8997 0.1720 39 1 4.0140 2.6604 -3.1657 40 1 5.7821 2.8201 -3.0366 41 1 4.9723 1.3627 -2.4133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339447441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -13.401778 kcal Electronic energy + Delta-G solvation = -23400.971688 eV Core-core repulsion = 19931.871512 eV Total energy + Delta-G solvation = -3469.100176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.04737 -39.60081 -38.98573 -37.49489 -36.10847 -34.77359 -32.22282 -30.71662 -29.94333 -28.65758 -27.40499 -27.18106 -26.56320 -24.64561 -23.43851 -21.86089 -21.17461 -18.75469 -18.35916 -17.70506 -17.54659 -17.25695 -17.11512 -16.94064 -16.43522 -16.11380 -15.65163 -15.21561 -15.01476 -14.60009 -14.54040 -14.21865 -13.90827 -13.41276 -13.17734 -13.10471 -12.97448 -12.95014 -12.66503 -12.51340 -12.41795 -12.20233 -12.10011 -11.98491 -11.51307 -11.38757 -11.15356 -10.91515 -10.72945 -10.70793 -10.50966 -9.06597 -8.13023 -6.28351 0.71293 1.24527 1.45271 1.46770 1.57247 1.76407 2.41192 2.53742 3.01082 3.17128 3.28129 3.44285 3.73895 3.77535 3.83895 4.08275 4.20447 4.31258 4.35607 4.43868 4.48799 4.55207 4.55230 4.62433 4.68425 4.85098 4.87322 4.95982 5.00159 5.06902 5.12926 5.40742 5.57655 5.59203 5.82127 6.01782 6.07782 6.19619 6.51591 6.53937 6.81011 7.40733 7.77453 8.93735 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.003758 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.097717 B = 7449.017171 C = 7633.497551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.046 3.954 4 C 0.220 3.780 5 H 0.141 0.859 6 O -0.548 6.548 7 C 0.131 3.869 8 N -0.308 5.308 9 N -0.363 5.363 10 C 0.373 3.627 11 N -0.455 5.455 12 C 0.031 3.969 13 C 0.240 3.760 14 H 0.004 0.996 15 C -0.153 4.153 16 C -0.526 4.526 17 H 0.073 0.927 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.263 1.263 24 N -0.477 5.477 25 C 0.060 3.940 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 -16.794 -7.204 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.032 4.032 4 C 0.158 3.842 5 H 0.158 0.842 6 O -0.354 6.354 7 C -0.139 4.139 8 N -0.148 5.148 9 N -0.208 5.208 10 C 0.016 3.984 11 N -0.178 5.178 12 C -0.116 4.116 13 C 0.134 3.866 14 H 0.022 0.978 15 C -0.212 4.212 16 C -0.564 4.564 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.188 1.188 24 N -0.174 5.174 25 C -0.081 4.081 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.832 -16.810 -6.327 20.974 hybrid contribution -0.151 1.519 -0.584 1.634 sum -10.982 -15.291 -6.911 20.055 Atomic orbital electron populations 1.22984 0.79096 1.04190 1.00884 1.87859 1.21571 1.26605 1.95599 1.23010 0.92335 0.85609 1.02284 1.19947 0.90902 0.83027 0.90359 0.84206 1.86555 1.81540 1.51372 1.15887 1.25691 1.03540 1.00357 0.84283 1.73729 1.16686 0.98053 1.26379 1.74729 1.18823 1.18438 1.08840 1.23247 0.95960 0.86838 0.92333 1.59184 1.39090 1.12732 1.06764 1.22569 0.95645 1.03175 0.90195 1.18947 0.93164 0.82279 0.92188 0.97803 1.22173 0.97865 1.01964 0.99234 1.21332 1.33948 1.00163 1.01005 0.90895 1.25791 0.97058 0.99506 0.96372 1.70085 1.46597 1.21375 1.17707 0.85378 0.78445 0.78364 0.78357 1.19714 1.21428 1.18757 1.46227 1.45799 1.11596 1.13739 1.22603 1.05541 1.00228 0.79716 0.93537 0.92968 0.87828 0.91229 0.92264 0.75699 0.95447 0.89114 0.88731 0.94765 0.91898 0.94936 0.92803 0.87598 0.88426 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.63 10.67 -144.34 -1.54 -9.17 16 3 C 0.05 0.89 5.55 71.98 0.40 1.29 16 4 C 0.22 4.88 3.66 29.84 0.11 4.99 16 5 H 0.14 2.43 6.96 -2.38 -0.02 2.41 16 6 O -0.55 -13.66 13.29 -144.34 -1.92 -15.57 16 7 C 0.13 4.00 6.93 137.63 0.95 4.95 16 8 N -0.31 -12.24 12.10 -49.54 -0.60 -12.84 16 9 N -0.36 -16.93 9.31 -58.01 -0.54 -17.47 16 10 C 0.37 15.29 6.75 260.11 1.76 17.05 16 11 N -0.45 -19.42 4.80 -711.01 -3.42 -22.84 16 12 C 0.03 1.03 8.60 127.69 1.10 2.13 16 13 C 0.24 12.59 2.03 44.17 0.09 12.68 16 14 H 0.00 0.25 7.95 -2.39 -0.02 0.23 16 15 C -0.15 -7.93 8.26 71.98 0.59 -7.34 16 16 C -0.53 -28.15 7.89 25.60 0.20 -27.95 16 17 H 0.07 3.69 6.77 -2.91 -0.02 3.67 16 18 C 0.01 0.66 5.30 84.65 0.45 1.11 16 19 N -0.92 -53.69 11.32 21.45 0.24 -53.44 16 20 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 N -0.48 -14.32 3.21 -538.20 -1.73 -16.05 16 25 C 0.06 1.03 9.29 127.77 1.19 2.22 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.39 8.67 8.97 -74.05 -0.66 8.00 16 32 H 0.03 0.96 6.51 -2.39 -0.02 0.94 16 33 H 0.09 3.18 6.41 -2.39 -0.02 3.17 16 34 H 0.09 2.29 5.41 -2.39 -0.01 2.28 16 35 H 0.03 1.76 5.88 -2.39 -0.01 1.74 16 36 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 37 H 0.03 1.55 6.47 -2.39 -0.02 1.53 16 38 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 39 H 0.11 1.27 7.85 -2.38 -0.02 1.25 16 40 H 0.10 1.76 7.57 -2.39 -0.02 1.74 16 41 H 0.12 1.33 7.11 -2.39 -0.02 1.31 16 Total: -1.00 -74.08 329.79 1.01 -73.08 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.39 Total: 17.08 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 8.09 Total: 12.69 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.04 Total: -122.64 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -3.46 Total: -24.75 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.08 1.01 -73.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339447441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.674 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds