Wall clock time and date at job start Tue Mar 31 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00118 * 2 1 4 4 C 1.52999 * 109.47311 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47031 * 67.36378 * 4 3 2 6 6 C 1.46905 * 111.00386 * 286.54190 * 5 4 3 7 7 C 1.50699 * 109.47036 * 175.33851 * 6 5 4 8 8 H 1.07993 * 120.00471 * 4.88782 * 7 6 5 9 9 C 1.37882 * 119.99494 * 184.89057 * 7 6 5 10 10 N 1.31518 * 119.99573 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00244 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47096 * 90.00075 * 11 9 7 13 13 H 1.48497 * 109.47038 * 209.99884 * 11 9 7 14 14 H 1.48496 * 109.46909 * 330.00245 * 11 9 7 15 15 C 1.38586 * 110.99942 * 162.58630 * 5 4 3 16 16 N 1.31212 * 126.47395 * 65.25480 * 15 5 4 17 17 N 1.28524 * 109.86063 * 179.97438 * 16 15 5 18 18 C 1.30292 * 110.05694 * 359.97438 * 17 16 15 19 19 C 1.50700 * 126.34956 * 180.02562 * 18 17 16 20 20 H 1.09007 * 109.46729 * 194.98030 * 19 18 17 21 21 C 1.52991 * 109.47148 * 74.97886 * 19 18 17 22 22 O 1.42900 * 109.46985 * 314.97525 * 19 18 17 23 23 N 1.36457 * 126.47075 * 244.93756 * 15 5 4 24 24 C 1.46495 * 127.13545 * 0.04234 * 23 15 5 25 25 H 1.09000 * 109.46756 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00180 * 1 2 3 27 27 H 1.08998 * 109.47140 * 60.00371 * 1 2 3 28 28 H 1.08999 * 109.47133 * 59.99603 * 3 2 1 29 29 H 1.09001 * 109.46625 * 299.99936 * 3 2 1 30 30 H 1.08998 * 109.47122 * 187.36501 * 4 3 2 31 31 H 1.09001 * 109.47238 * 307.36732 * 4 3 2 32 32 H 1.09001 * 109.46434 * 295.33710 * 6 5 4 33 33 H 1.08999 * 109.46957 * 55.33680 * 6 5 4 34 34 H 0.96996 * 119.99665 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47568 * 59.99656 * 21 19 18 36 36 H 1.09002 * 109.46960 * 180.02562 * 21 19 18 37 37 H 1.08999 * 109.47155 * 299.99481 * 21 19 18 38 38 H 0.96704 * 114.00076 * 180.02562 * 22 19 18 39 39 H 1.09003 * 109.47435 * 95.16218 * 24 23 15 40 40 H 1.09002 * 109.46875 * 215.15265 * 24 23 15 41 41 H 1.08997 * 109.47385 * 335.15247 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9820 0.6144 -1.2774 6 6 3.6752 -0.8204 -1.3495 7 6 4.0422 -1.3445 -2.7140 8 1 4.5337 -0.6986 -3.4263 9 6 3.7504 -2.6488 -3.0528 10 7 4.0703 -3.1061 -4.2437 11 14 2.9009 -3.7663 -1.8203 12 1 1.4291 -3.6561 -1.9846 13 1 3.3212 -5.1712 -2.0543 14 1 3.2770 -3.3600 -0.4425 15 6 5.3339 0.8439 -1.4782 16 7 6.3220 0.3590 -0.7640 17 7 7.4443 0.7763 -1.2310 18 6 7.2406 1.5455 -2.2627 19 6 8.2986 2.2305 -3.0889 20 1 7.8361 3.0029 -3.7035 21 6 8.9849 1.2034 -3.9915 22 8 9.2669 2.8267 -2.2235 23 7 5.8891 1.6121 -2.4599 24 6 5.1835 2.3561 -3.5062 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.9781 2.1720 0.1324 31 1 3.8481 0.5344 0.8176 32 1 4.2473 -1.3529 -0.5898 33 1 2.6100 -0.9733 -1.1760 34 1 3.8647 -4.0236 -4.4822 35 1 8.2464 0.7487 -4.6516 36 1 9.7505 1.6988 -4.5888 37 1 9.4474 0.4311 -3.3770 38 1 9.9794 3.2867 -2.6881 39 1 5.0423 3.3883 -3.1857 40 1 5.7711 2.3379 -4.4241 41 1 4.2123 1.8957 -3.6873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340002535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:09 Heat of formation + Delta-G solvation = 7.220169 kcal Electronic energy + Delta-G solvation = -23783.445992 eV Core-core repulsion = 20315.240050 eV Total energy + Delta-G solvation = -3468.205942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34526 -38.18430 -37.33925 -36.15485 -34.38798 -32.53335 -31.45376 -29.95458 -28.54549 -27.30825 -26.76424 -25.66285 -23.82545 -22.34113 -22.18024 -20.18849 -19.69682 -17.30178 -17.11841 -16.50690 -16.24742 -15.89632 -15.78010 -15.14823 -14.86259 -14.63694 -14.38032 -14.02845 -13.64701 -12.97054 -12.83588 -12.64233 -12.48517 -12.42478 -12.10153 -11.96066 -11.58451 -11.47791 -11.31417 -11.00635 -10.85810 -10.60734 -10.55409 -10.27265 -9.90641 -9.79935 -9.54685 -9.47188 -9.12985 -8.53655 -8.34893 -7.92628 -6.04262 -4.00715 2.28456 2.71746 3.34688 3.41772 3.48699 3.51457 4.04001 4.22728 4.42999 4.48493 4.64702 4.86611 5.03519 5.12623 5.25141 5.32253 5.37285 5.44308 5.48506 5.57560 5.62977 5.65222 5.71485 5.75270 5.80975 5.88573 5.97098 6.17776 6.22656 6.32583 6.57815 6.89520 7.07857 7.28576 7.41410 7.53951 7.57950 7.73646 8.10482 8.55919 8.96391 9.40660 9.57408 11.08869 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.006427 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.070222 B = 4355.719481 C = 5524.204025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.070 3.930 4 C 0.066 3.934 5 N -0.461 5.461 6 C 0.164 3.836 7 C -0.512 4.512 8 H 0.070 0.930 9 C 0.073 3.927 10 N -0.902 5.902 11 Si 0.876 3.124 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.401 3.599 16 N -0.320 5.320 17 N -0.262 5.262 18 C 0.155 3.845 19 C 0.205 3.795 20 H 0.067 0.933 21 C -0.180 4.180 22 O -0.550 6.550 23 N -0.463 5.463 24 C 0.081 3.919 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.004 0.996 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.381 0.619 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 14.505 1.736 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.007 4.007 4 C -0.062 4.062 5 N -0.187 5.187 6 C 0.040 3.960 7 C -0.550 4.550 8 H 0.088 0.912 9 C -0.129 4.129 10 N -0.541 5.541 11 Si 0.703 3.297 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.186 1.186 15 C 0.045 3.955 16 N -0.164 5.164 17 N -0.104 5.104 18 C -0.112 4.112 19 C 0.144 3.856 20 H 0.085 0.915 21 C -0.238 4.238 22 O -0.355 6.355 23 N -0.157 5.157 24 C -0.062 4.062 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.228 0.772 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.055 13.391 2.768 13.674 hybrid contribution -0.698 0.024 -0.579 0.908 sum -0.753 13.414 2.189 13.613 Atomic orbital electron populations 1.22703 0.82002 1.02565 0.99379 1.88089 1.18977 1.27343 1.95021 1.22511 0.92976 0.85255 0.99964 1.22103 0.93658 0.99770 0.90641 1.58967 1.06450 1.21314 1.31974 1.20656 0.98684 0.78727 0.97953 1.20922 1.39191 0.97186 0.97721 0.91192 1.24786 0.95397 0.97610 0.95108 1.69890 1.47918 1.16403 1.19846 0.86813 0.80068 0.79958 0.82822 1.20045 1.21409 1.18632 1.22274 0.92352 0.92865 0.88004 1.74633 0.94645 1.21587 1.25504 1.73908 1.18999 1.09681 1.07808 1.23787 0.82551 1.04283 1.00597 1.19471 0.85986 0.92932 0.87234 0.91519 1.22461 1.01277 1.00266 0.99798 1.86619 1.39015 1.73786 1.36031 1.46007 1.06235 1.38551 1.24928 1.21966 0.99577 0.95790 0.88862 0.89975 0.94687 0.94060 0.93077 0.92354 0.90408 0.92491 0.97767 0.90862 0.92720 0.91047 0.91522 0.90515 0.77181 0.91071 0.90223 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.54 7.71 -35.23 -0.27 -6.81 16 3 C 0.07 1.04 6.23 37.16 0.23 1.27 16 4 C 0.07 1.16 5.47 -3.83 -0.02 1.14 16 5 N -0.46 -9.89 4.49 -175.88 -0.79 -10.68 16 6 C 0.16 4.16 3.45 -4.97 -0.02 4.14 16 7 C -0.51 -14.87 9.26 -34.44 -0.32 -15.19 16 8 H 0.07 2.19 7.58 -52.49 -0.40 1.79 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 11 Si 0.88 22.49 27.37 -169.99 -4.65 17.84 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.26 -6.69 6.68 56.52 0.38 -6.31 16 15 C 0.40 8.95 5.18 -318.87 -1.65 7.30 16 16 N -0.32 -7.88 12.10 30.32 0.37 -7.52 16 17 N -0.26 -6.09 12.18 32.99 0.40 -5.69 16 18 C 0.16 3.00 6.95 -154.01 -1.07 1.92 16 19 C 0.21 2.82 3.95 -27.89 -0.11 2.71 16 20 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 21 C -0.18 -2.29 9.52 37.15 0.35 -1.93 16 22 O -0.55 -7.23 13.30 -35.23 -0.47 -7.70 16 23 N -0.46 -8.86 3.21 -121.46 -0.39 -9.25 16 24 C 0.08 1.15 10.75 59.84 0.64 1.79 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 31 H 0.06 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.00 0.12 7.45 -51.93 -0.39 -0.26 16 33 H 0.07 1.83 4.34 -51.93 -0.23 1.60 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.38 2.69 9.08 45.56 0.41 3.10 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.93 7.78 -51.93 -0.40 0.52 16 41 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -38.23 341.79 -6.43 -44.66 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.60 Total: 0.55 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.95 Total: 6.72 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.36 Total: -60.40 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.74 Total: -14.52 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.65 Total: 17.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.23 -6.43 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340002535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.880 kcal (2) G-P(sol) polarization free energy of solvation -38.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds