Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99761 * 2 1 4 4 C 1.53003 * 109.47185 * 269.99803 * 3 2 1 5 5 C 1.53005 * 109.46804 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46949 * 180.02562 * 5 4 3 7 7 O 1.20821 * 119.99882 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.34774 * 120.00021 * 180.02562 * 2 1 3 10 10 O 1.21585 * 120.00098 * 184.63342 * 9 2 1 11 11 N 1.34771 * 119.99811 * 4.62672 * 9 2 1 12 12 C 1.46507 * 119.99947 * 174.93528 * 11 9 2 13 13 C 1.52999 * 109.47237 * 184.60894 * 12 11 9 14 14 C 1.50699 * 115.54707 * 306.47706 * 13 12 11 15 15 H 1.08000 * 119.99716 * 144.27647 * 14 13 12 16 16 C 1.37878 * 120.00337 * 324.28604 * 14 13 12 17 17 N 1.31519 * 119.99865 * 3.35016 * 16 14 13 18 18 Si 1.86799 * 120.00115 * 183.35127 * 16 14 13 19 19 H 1.48504 * 109.46934 * 59.99592 * 18 16 14 20 20 H 1.48494 * 109.47119 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47171 * 299.99787 * 18 16 14 22 22 C 1.52994 * 117.49872 * 160.81510 * 13 12 11 23 23 C 1.52993 * 117.49986 * 92.15309 * 13 12 11 24 24 H 1.08996 * 109.47393 * 264.30339 * 1 2 3 25 25 H 1.09006 * 109.47134 * 24.30325 * 1 2 3 26 26 H 1.09003 * 109.47043 * 144.30067 * 1 2 3 27 27 H 1.08993 * 109.47480 * 30.00268 * 3 2 1 28 28 H 1.09001 * 109.46966 * 150.00123 * 3 2 1 29 29 H 1.08998 * 109.47126 * 300.00130 * 4 3 2 30 30 H 1.09000 * 109.47000 * 60.00832 * 4 3 2 31 31 H 1.09003 * 109.46937 * 300.00250 * 5 4 3 32 32 H 1.09001 * 109.47370 * 60.00306 * 5 4 3 33 33 H 0.96695 * 116.99914 * 179.97438 * 8 6 5 34 34 H 0.96994 * 120.00574 * 354.65537 * 11 9 2 35 35 H 1.09009 * 109.46892 * 304.60551 * 12 11 9 36 36 H 1.09001 * 109.47245 * 64.60521 * 12 11 9 37 37 H 0.96999 * 119.99427 * 185.00533 * 17 16 14 38 38 H 1.09004 * 117.49952 * 359.97438 * 22 13 12 39 39 H 1.09000 * 117.50189 * 145.01741 * 22 13 12 40 40 H 1.09005 * 117.49514 * 214.97444 * 23 13 12 41 41 H 1.09002 * 117.50236 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2180 3.0352 -1.4424 6 6 3.4687 3.4706 -2.8632 7 8 3.0758 2.7908 -3.7816 8 8 4.1293 4.6130 -3.1085 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1690 0.0845 11 7 1.4683 -2.3324 -0.0952 12 6 2.2043 -3.5941 -0.2076 13 6 1.2166 -4.7440 -0.4152 14 6 0.1133 -4.8454 0.6063 15 1 -0.8735 -5.1648 0.3052 16 6 0.3634 -4.5300 1.9250 17 7 1.5463 -4.0779 2.2800 18 14 -0.9778 -4.7450 3.2073 19 1 -1.3962 -6.1692 3.2521 20 1 -0.4593 -4.3398 4.5385 21 1 -2.1439 -3.8975 2.8509 22 6 1.7642 -6.0495 -0.9954 23 6 0.8845 -5.1387 -1.8555 24 1 -0.3634 -0.1020 1.0225 25 1 -0.3634 0.9366 -0.4230 26 1 -0.3633 -0.8346 -0.5997 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8409 -1.9563 31 1 2.6292 3.7950 -0.9284 32 1 4.1705 2.9045 -0.9287 33 1 4.2663 4.8505 -4.0358 34 1 0.4984 -2.3361 -0.0848 35 1 2.8858 -3.5428 -1.0569 36 1 2.7742 -3.7650 0.7057 37 1 1.7458 -3.9250 3.2169 38 1 2.8280 -6.0890 -1.2297 39 1 1.3260 -6.9817 -0.6388 40 1 -0.1321 -5.4721 -2.0643 41 1 1.3693 -4.5789 -2.6553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340483059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -97.282126 kcal Electronic energy + Delta-G solvation = -22821.842427 eV Core-core repulsion = 19316.812175 eV Total energy + Delta-G solvation = -3505.030252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41323 -39.36309 -36.89741 -36.40388 -35.41052 -33.59173 -32.58471 -32.08856 -28.09289 -26.40840 -25.64159 -24.86264 -22.67437 -21.20385 -20.81841 -19.23754 -19.03556 -18.20845 -17.54126 -16.70404 -16.39143 -16.11584 -15.49243 -15.03257 -14.68501 -14.45384 -13.92723 -13.58553 -13.33986 -13.17322 -12.68474 -12.52523 -12.44441 -12.18529 -11.83403 -11.75780 -11.67169 -11.58301 -11.32557 -11.07491 -10.76514 -10.74761 -10.67726 -10.49864 -10.23026 -9.67722 -9.23706 -8.93872 -8.82820 -8.29996 -8.24409 -7.60701 -5.97898 -4.18298 2.04641 2.81558 3.21883 3.30134 3.31108 3.38792 4.08661 4.29909 4.68051 4.79078 4.85875 5.00733 5.08256 5.33710 5.36524 5.44970 5.48604 5.51296 5.68978 5.82451 5.97421 6.07549 6.09965 6.25064 6.35027 6.36332 6.58941 6.66059 6.77811 6.88645 6.97381 7.14580 7.29225 7.59526 7.67090 7.70756 7.83525 8.01802 8.34168 8.77998 9.00184 9.44586 9.54391 10.91014 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.003876 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.882760 B = 7221.817893 C = 7860.979814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.642 5.642 3 C 0.139 3.861 4 C -0.127 4.127 5 C -0.109 4.109 6 C 0.477 3.523 7 O -0.513 6.513 8 O -0.521 6.521 9 C 0.701 3.299 10 O -0.607 6.607 11 N -0.698 5.698 12 C 0.184 3.816 13 C 0.037 3.963 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.863 5.863 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.198 4.198 23 C -0.212 4.212 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.408 0.592 34 H 0.396 0.604 35 H 0.017 0.983 36 H 0.109 0.891 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 14.934 -5.103 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.381 5.381 3 C 0.014 3.986 4 C -0.166 4.166 5 C -0.148 4.148 6 C 0.319 3.681 7 O -0.401 6.401 8 O -0.334 6.334 9 C 0.402 3.598 10 O -0.487 6.487 11 N -0.349 5.349 12 C 0.060 3.940 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.499 5.499 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.237 4.237 23 C -0.250 4.250 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.266 0.734 34 H 0.232 0.768 35 H 0.036 0.964 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.667 14.699 -4.713 15.450 hybrid contribution -1.170 -0.093 0.002 1.174 sum -0.503 14.606 -4.711 15.355 Atomic orbital electron populations 1.21632 0.80363 1.02386 1.01599 1.46906 1.05915 1.04926 1.80339 1.21101 0.98099 0.84391 0.94975 1.21898 1.00859 0.94905 0.98982 1.21319 1.04156 0.99407 0.89887 1.23656 0.73580 0.77590 0.93234 1.90749 1.48306 1.53826 1.47195 1.84546 1.71034 1.41517 1.36258 1.15915 0.85266 0.80461 0.78189 1.90813 1.12268 1.86380 1.59239 1.44949 1.09974 1.04540 1.75475 1.20898 0.92513 0.79874 1.00721 1.19231 0.96212 0.91228 0.89699 1.20472 0.95251 1.46094 0.91810 0.92212 1.25010 0.95723 0.93818 0.98481 1.69917 1.20586 1.42489 1.16921 0.86655 0.81908 0.78690 0.80730 1.20261 1.21258 1.20182 1.22937 0.96752 0.97001 1.07009 1.22948 0.99226 1.06510 0.96271 0.92959 0.91537 0.91424 0.91096 0.89643 0.90357 0.91140 0.87597 0.87236 0.73355 0.76843 0.96444 0.87373 0.92685 0.91467 0.90245 0.90716 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.12 59.85 0.61 1.74 16 2 N -0.64 -10.68 2.87 -187.35 -0.54 -11.21 16 3 C 0.14 1.82 5.42 -4.04 -0.02 1.80 16 4 C -0.13 -1.56 4.83 -26.73 -0.13 -1.69 16 5 C -0.11 -0.98 5.81 -27.88 -0.16 -1.14 16 6 C 0.48 5.07 8.33 36.01 0.30 5.37 16 7 O -0.51 -7.45 16.74 -18.75 -0.31 -7.77 16 8 O -0.52 -4.13 13.42 -39.25 -0.53 -4.66 16 9 C 0.70 15.19 8.27 -86.92 -0.72 14.47 16 10 O -0.61 -15.14 15.91 5.29 0.08 -15.06 16 11 N -0.70 -15.55 4.95 -65.22 -0.32 -15.88 16 12 C 0.18 4.48 4.61 -4.04 -0.02 4.46 16 13 C 0.04 0.88 2.08 -155.67 -0.32 0.56 16 14 C -0.50 -12.66 8.26 -34.44 -0.28 -12.94 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 16 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 17 N -0.86 -23.02 10.17 55.43 0.56 -22.46 16 18 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.20 -4.40 9.96 -26.70 -0.27 -4.67 16 23 C -0.21 -4.51 9.92 -26.70 -0.26 -4.78 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 26 H 0.07 0.95 6.57 -51.93 -0.34 0.60 16 27 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.09 1.25 7.36 -51.93 -0.38 0.87 16 29 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 1.62 9.10 45.56 0.41 2.04 16 34 H 0.40 8.46 5.73 -40.82 -0.23 8.22 16 35 H 0.02 0.42 8.08 -51.92 -0.42 0.01 16 36 H 0.11 3.00 5.97 -51.93 -0.31 2.69 16 37 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -32.55 346.06 -7.69 -40.24 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.45 Total: 11.70 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.38 Total: 4.98 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.30 Total: -49.55 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.76 Total: -27.48 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.55 -7.69 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340483059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.040 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds